Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_02G0396700 | OGI:02001240 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr02:25637921-25639222 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCGCTCATGAAACTCATCATGCTTACACTGTTGCTATTGCTGCTAAATTCTAGCCAAACCAACTGCTCCCAGCTCTACGACAACACCACTGACATGCTCTCGTTGCTCGACTTTAAGGAAGCCGTTACTAACGATCCGAAAGGAACCTTGAGTTCCTGGAACAGAACCACCCCGTTGTGCAGGTGGAAAGGCGTCAAATGCAGCCCAACTCGGCCAGGGCGAGTTGTGGCGTTGGATCTCTCCGGCCTAAGCTTAGCTGGCGTAATCACCAGCTCTCTTGGAAACCTAACGTTCCTTGAGAAATTGGACCTGTCCACAAATCAGTTCTCTGGCTTGTTACCTCCTCTGAACCATCTGCATATGCTGCAAGTCCTTAATCTGAGCACGAACTCATTGCAAGATGTGATTCCGGAAGCACTTGTCAATTGCTCCAGCCTAAGAATATTGGAACTGTCTAAGAATTTCATGGCTGGTGAAATTCCCCCAAAATTAGATCTCCTCTCCAATCTTTTGATCTTATGGCTTTCCTGGAACAATTTCACTGGAATTATTCCACCAACCCTCAGCAACATCACTCACCTAGAGAGATTAGCTCTAGCATCTAATCACTTCACTGGAACAATTCCTGACGAACTAGGGAATTTGTCACATTTGTCGAGGTTGCTCCTAGGTGGCAATGACCTGTCAGGTGAAATTCCACATGTCCTCTTTAATATGTCTTCTCTAAAGATGCTAGCTTTGGAATTGAATAAGTTTGGTACTACACTGCCACCGAATATTGGAGATGCCCTCCCCAATCTCCAATGGCTTATGTTAAATCATAACATGTTTGAAGGTTACATCCCAGCTTCCGTAGGAAATATCTCAGGGTTGGAAAGACTAGACCTAGAAAACAACAATTTTAATGGAGAAATTCTTAGTTCTTTCGGTAAGCTTCGTAATCTGTATCATCTAAATCTCGAGGAAAACCAGCTTGAAGCTAGTAACAGCCATCAAAGCTGGGAATTTTTTCACGCATTAACAAATTGTAGTCTTCTACAAGTTCTCTCACTAGCTGCGAATCAGCTACAAGGATCTATTCCAAGTTCAATTGGTAACTTATCAACCGATCTTCAACAGTTATATCTAGGTGGTAATGAGTTATCAGGAATAGTTCCCCCAAGCATAGGGAGACTTAAAGGCTTAACTACACTTGCACTAGATACCAACAGTTTAAGTGGTACAATTGAAGGATGGGTTGGAAGACTAGCAAAACTAGAGTGGCTATTTCTCGAAGATAACAGTTTCACTACATATTAA
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| CDS seq | ATGCCGCTCATGAAACTCATCATGCTTACACTGTTGCTATTGCTGCTAAATTCTAGCCAAACCAACTGCTCCCAGCTCTACGACAACACCACTGACATGCTCTCGTTGCTCGACTTTAAGGAAGCCGTTACTAACGATCCGAAAGGAACCTTGAGTTCCTGGAACAGAACCACCCCGTTGTGCAGGTGGAAAGGCGTCAAATGCAGCCCAACTCGGCCAGGGCGAGTTGTGGCGTTGGATCTCTCCGGCCTAAGCTTAGCTGGCGTAATCACCAGCTCTCTTGGAAACCTAACGTTCCTTGAGAAATTGGACCTGTCCACAAATCAGTTCTCTGGCTTGTTACCTCCTCTGAACCATCTGCATATGCTGCAAGTCCTTAATCTGAGCACGAACTCATTGCAAGATGTGATTCCGGAAGCACTTGTCAATTGCTCCAGCCTAAGAATATTGGAACTGTCTAAGAATTTCATGGCTGGTGAAATTCCCCCAAAATTAGATCTCCTCTCCAATCTTTTGATCTTATGGCTTTCCTGGAACAATTTCACTGGAATTATTCCACCAACCCTCAGCAACATCACTCACCTAGAGAGATTAGCTCTAGCATCTAATCACTTCACTGGAACAATTCCTGACGAACTAGGGAATTTGTCACATTTGTCGAGGTTGCTCCTAGGTGGCAATGACCTGTCAGGTGAAATTCCACATGTCCTCTTTAATATGTCTTCTCTAAAGATGCTAGCTTTGGAATTGAATAAGTTTGGTACTACACTGCCACCGAATATTGGAGATGCCCTCCCCAATCTCCAATGGCTTATGTTAAATCATAACATGTTTGAAGGTTACATCCCAGCTTCCGTAGGAAATATCTCAGGGTTGGAAAGACTAGACCTAGAAAACAACAATTTTAATGGAGAAATTCTTAGTTCTTTCGGTAAGCTTCGTAATCTGTATCATCTAAATCTCGAGGAAAACCAGCTTGAAGCTAGTAACAGCCATCAAAGCTGGGAATTTTTTCACGCATTAACAAATTGTAGTCTTCTACAAGTTCTCTCACTAGCTGCGAATCAGCTACAAGGATCTATTCCAAGTTCAATTGGTAACTTATCAACCGATCTTCAACAGTTATATCTAGGTGGTAATGAGTTATCAGGAATAGTTCCCCCAAGCATAGGGAGACTTAAAGGCTTAACTACACTTGCACTAGATACCAACAGTTTAAGTGGTACAATTGAAGGATGGGTTGGAAGACTAGCAAAACTAGAGTGGCTATTTCTCGAAGATAACAGTTTCACTACATATTAA
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| Protein seq | MPLMKLIMLTLLLLLLNSSQTNCSQLYDNTTDMLSLLDFKEAVTNDPKGTLSSWNRTTPLCRWKGVKCSPTRPGRVVALDLSGLSLAGVITSSLGNLTFLEKLDLSTNQFSGLLPPLNHLHMLQVLNLSTNSLQDVIPEALVNCSSLRILELSKNFMAGEIPPKLDLLSNLLILWLSWNNFTGIIPPTLSNITHLERLALASNHFTGTIPDELGNLSHLSRLLLGGNDLSGEIPHVLFNMSSLKMLALELNKFGTTLPPNIGDALPNLQWLMLNHNMFEGYIPASVGNISGLERLDLENNNFNGEILSSFGKLRNLYHLNLEENQLEASNSHQSWEFFHALTNCSLLQVLSLAANQLQGSIPSSIGNLSTDLQQLYLGGNELSGIVPPSIGRLKGLTTLALDTNSLSGTIEGWVGRLAKLEWLFLEDNSFTTY |
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| Function | LRR receptor-like serine/threonine-protein kinase EFR [UniProtKB/Swiss-Prot:C0LGT6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0396700 | OsMH63_02T0396700.1 | Chr02 | 25637921 | 25639222 | + | maker | ||
| CDS seq | ATGCCGCTCATGAAACTCATCATGCTTACACTGTTGCTATTGCTGCTAAATTCTAGCCAAACCAACTGCTCCCAGCTCTACGACAACACCACTGACATGCTCTCGTTGCTCGACTTTAAGGAAGCCGTTACTAACGATCCGAAAGGAACCTTGAGTTCCTGGAACAGAACCACCCCGTTGTGCAGGTGGAAAGGCGTCAAATGCAGCCCAACTCGGCCAGGGCGAGTTGTGGCGTTGGATCTCTCCGGCCTAAGCTTAGCTGGCGTAATCACCAGCTCTCTTGGAAACCTAACGTTCCTTGAGAAATTGGACCTGTCCACAAATCAGTTCTCTGGCTTGTTACCTCCTCTGAACCATCTGCATATGCTGCAAGTCCTTAATCTGAGCACGAACTCATTGCAAGATGTGATTCCGGAAGCACTTGTCAATTGCTCCAGCCTAAGAATATTGGAACTGTCTAAGAATTTCATGGCTGGTGAAATTCCCCCAAAATTAGATCTCCTCTCCAATCTTTTGATCTTATGGCTTTCCTGGAACAATTTCACTGGAATTATTCCACCAACCCTCAGCAACATCACTCACCTAGAGAGATTAGCTCTAGCATCTAATCACTTCACTGGAACAATTCCTGACGAACTAGGGAATTTGTCACATTTGTCGAGGTTGCTCCTAGGTGGCAATGACCTGTCAGGTGAAATTCCACATGTCCTCTTTAATATGTCTTCTCTAAAGATGCTAGCTTTGGAATTGAATAAGTTTGGTACTACACTGCCACCGAATATTGGAGATGCCCTCCCCAATCTCCAATGGCTTATGTTAAATCATAACATGTTTGAAGGTTACATCCCAGCTTCCGTAGGAAATATCTCAGGGTTGGAAAGACTAGACCTAGAAAACAACAATTTTAATGGAGAAATTCTTAGTTCTTTCGGTAAGCTTCGTAATCTGTATCATCTAAATCTCGAGGAAAACCAGCTTGAAGCTAGTAACAGCCATCAAAGCTGGGAATTTTTTCACGCATTAACAAATTGTAGTCTTCTACAAGTTCTCTCACTAGCTGCGAATCAGCTACAAGGATCTATTCCAAGTTCAATTGGTAACTTATCAACCGATCTTCAACAGTTATATCTAGGTGGTAATGAGTTATCAGGAATAGTTCCCCCAAGCATAGGGAGACTTAAAGGCTTAACTACACTTGCACTAGATACCAACAGTTTAAGTGGTACAATTGAAGGATGGGTTGGAAGACTAGCAAAACTAGAGTGGCTATTTCTCGAAGATAACAGTTTCACTACATATTAA
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| Protein seq | MPLMKLIMLTLLLLLLNSSQTNCSQLYDNTTDMLSLLDFKEAVTNDPKGTLSSWNRTTPLCRWKGVKCSPTRPGRVVALDLSGLSLAGVITSSLGNLTFLEKLDLSTNQFSGLLPPLNHLHMLQVLNLSTNSLQDVIPEALVNCSSLRILELSKNFMAGEIPPKLDLLSNLLILWLSWNNFTGIIPPTLSNITHLERLALASNHFTGTIPDELGNLSHLSRLLLGGNDLSGEIPHVLFNMSSLKMLALELNKFGTTLPPNIGDALPNLQWLMLNHNMFEGYIPASVGNISGLERLDLENNNFNGEILSSFGKLRNLYHLNLEENQLEASNSHQSWEFFHALTNCSLLQVLSLAANQLQGSIPSSIGNLSTDLQQLYLGGNELSGIVPPSIGRLKGLTTLALDTNSLSGTIEGWVGRLAKLEWLFLEDNSFTTY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.187931 | 0.0432085 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0610000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40180 | SBH | 1.164243 | 0.429848 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0610000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024890 | SBH | 0.266269 | 0.551824 | 0.649657 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025230 | RBH | 0.246092 | 0.000000 | 0.510617 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025050 | SBH | 0.778974 | 0.000000 | 0.521185 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020740 | SBH | 0.027518 | 0.028389 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024610 | SBH | 1.116083 | 0.985470 | 3.219374 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0395600 | SBH | 15.8390695 | 10.047532 | 6.5752895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024630 | RBH | 0.093321 | 0.0 | 0.055257 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0425600 | RBH | 3.2197335 | 0.0065365 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0024840 | SBH | 0.416905 | 0.027276 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024660 | SBH | 4.461609 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024590 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024040 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024900 | SBH | 0.199466 | 0.184480 | 0.440630 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024740 | SBH | 0.0 | 0.0 | 1.133679 |
