Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0610000 | OGI:02001240 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:23966075-23967661 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTGCATTTCTGGCGTTTTTGCTGCTGTTGCTGCTGTCTTACGGAGCTGGCAGCATCCGTTGTGAAGCAACTCTGAACAACACAGCTGATCTGCTCTCCCTGATGGATTTCAAGAAGCATATAACGGAAGATCCAACGCAAGCGATGAGCTCGTGGAACGCAAGCGTCCCCTTCTGCCAGTGGACCGGCGTTAGCTGCAGCCGGAGGCACCCTGGGCGCGTCACGGCGCTGAATCTCTTCAAACTCTCCCTGTCCGGCACAATCAGCTCCTCCCTTGGGAACCTCACGTTTCTCAAGGCACTCAACTTCTCTTCAAACCATTTCTCCGGCAAATTGCCTCCGCTGAACCATCTCCACAGACTGAAAGTCCTGGATCTTAGGCATAACTCACTGCGTGATACTATTCCAGAGGGGCTTGCAAACTGTTCGAGACTAAGGGTGTTGGATCTCTCCTCGAATTCTCTTGTTGGTGAAATTCCCACCAAATTGGGCCTTCTAACGAACCTCTCGAGCTTATGTCTTTCCAATAATTCATTCACAGGAACCATCCCTCCCACCCTTGGCAACATTACCGGCCTAAACTATCTCTCTCTTCAAATAAACCATCTCGAGGGAAGCATTCCCCGTGAGCTTGGGAAATTGTCAGATTTGTTGTCATTGAACATTTTTATGAACAACATATCAGGCCGACTTCCACATGAACTGTTCAATCTGTCTTCTCTACAGACTTTATGGTTGAGTGATAACATGCTAGGGAAAGAAGCACTGCCACCCAACATTGGCGATGTGCTCCCTAATCTCCAATTCCTTTCCTTAGCGAGGAATATGTTTGAAGGTCATATACCAACTTCCCTTATCAACGCTTCGGGGCTATGGTTGATAGACTTGACAAACAACAATTTCTATGGCCAGGTTCCTAGTTATCTCAGTGAGCTTGCAAATCTGTCCGATTTGTATCTAGCGGGTAACCATCTCGAAGCAAGTGACAATGAAAAATGGTTACACGCATTTGCAAATTGTACCCTTCTTCAAGCACTCAACCTAGCTCGTAATCAAATAAAAGGAGATATACCAAGCTCGATTGGTAACCTATCCACCAATCTGCAATATCTGAATTTGGGTGTAAACCATTTTGTAGGAGTGGTTCCACCGAGTATAGGGAACCTTCATGGCCTAACTAGTTTGTGGCTAAGTAAAAACAATCTTATTGGCACAATCGAAGAATGGGTAGGAAAACTGAGGAATCTAGAACTTCTATATCTCCAGGAGAACAATTTCACCGGGTCAATACCATCATCCATCGGTGATCTTACTAACTTGATACAATTTTCTTTGGGAAAGAATAGCTTAGATGGTCAAATACCAGCCAACTTAGGAAATCTTCGGCAGCTAGATCGTCTCAACTTTAGTTACAACAATCTTCATGGTAGTATACCGTACAATGTGGGAAAGCTTCGAAACCTCGTTCAACTAGACCTTAGTCACAACAATCTTGATGGTAACATACCATCCAGTTTTATAAAGCTTCAAAAGCTCAAGCATTTAGACCTTAGTGACAATAATTTCCAAGGTATCATACCTTAA
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| CDS seq | ATGGCTGCATTTCTGGCGTTTTTGCTGCTGTTGCTGCTGTCTTACGGAGCTGGCAGCATCCGTTGTGAAGCAACTCTGAACAACACAGCTGATCTGCTCTCCCTGATGGATTTCAAGAAGCATATAACGGAAGATCCAACGCAAGCGATGAGCTCGTGGAACGCAAGCGTCCCCTTCTGCCAGTGGACCGGCGTTAGCTGCAGCCGGAGGCACCCTGGGCGCGTCACGGCGCTGAATCTCTTCAAACTCTCCCTGTCCGGCACAATCAGCTCCTCCCTTGGGAACCTCACGTTTCTCAAGGCACTCAACTTCTCTTCAAACCATTTCTCCGGCAAATTGCCTCCGCTGAACCATCTCCACAGACTGAAAGTCCTGGATCTTAGGCATAACTCACTGCGTGATACTATTCCAGAGGGGCTTGCAAACTGTTCGAGACTAAGGGTGTTGGATCTCTCCTCGAATTCTCTTGTTGGTGAAATTCCCACCAAATTGGGCCTTCTAACGAACCTCTCGAGCTTATGTCTTTCCAATAATTCATTCACAGGAACCATCCCTCCCACCCTTGGCAACATTACCGGCCTAAACTATCTCTCTCTTCAAATAAACCATCTCGAGGGAAGCATTCCCCGTGAGCTTGGGAAATTGTCAGATTTGTTGTCATTGAACATTTTTATGAACAACATATCAGGCCGACTTCCACATGAACTGTTCAATCTGTCTTCTCTACAGACTTTATGGTTGAGTGATAACATGCTAGGGAAAGAAGCACTGCCACCCAACATTGGCGATGTGCTCCCTAATCTCCAATTCCTTTCCTTAGCGAGGAATATGTTTGAAGGTCATATACCAACTTCCCTTATCAACGCTTCGGGGCTATGGTTGATAGACTTGACAAACAACAATTTCTATGGCCAGGTTCCTAGTTATCTCAGTGAGCTTGCAAATCTGTCCGATTTGTATCTAGCGGGTAACCATCTCGAAGCAAGTGACAATGAAAAATGGTTACACGCATTTGCAAATTGTACCCTTCTTCAAGCACTCAACCTAGCTCGTAATCAAATAAAAGGAGATATACCAAGCTCGATTGGTAACCTATCCACCAATCTGCAATATCTGAATTTGGGTGTAAACCATTTTGTAGGAGTGGTTCCACCGAGTATAGGGAACCTTCATGGCCTAACTAGTTTGTGGCTAAGTAAAAACAATCTTATTGGCACAATCGAAGAATGGGTAGGAAAACTGAGGAATCTAGAACTTCTATATCTCCAGGAGAACAATTTCACCGGGTCAATACCATCATCCATCGGTGATCTTACTAACTTGATACAATTTTCTTTGGGAAAGAATAGCTTAGATGGTCAAATACCAGCCAACTTAGGAAATCTTCGGCAGCTAGATCGTCTCAACTTTAGTTACAACAATCTTCATGGTAGTATACCGTACAATGTGGGAAAGCTTCGAAACCTCGTTCAACTAGACCTTAGTCACAACAATCTTGATGGTAACATACCATCCAGTTTTATAAAGCTTCAAAAGCTCAAGCATTTAGACCTTAGTGACAATAATTTCCAAGGTATCATACCTTAA
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| Protein seq | MAAFLAFLLLLLLSYGAGSIRCEATLNNTADLLSLMDFKKHITEDPTQAMSSWNASVPFCQWTGVSCSRRHPGRVTALNLFKLSLSGTISSSLGNLTFLKALNFSSNHFSGKLPPLNHLHRLKVLDLRHNSLRDTIPEGLANCSRLRVLDLSSNSLVGEIPTKLGLLTNLSSLCLSNNSFTGTIPPTLGNITGLNYLSLQINHLEGSIPRELGKLSDLLSLNIFMNNISGRLPHELFNLSSLQTLWLSDNMLGKEALPPNIGDVLPNLQFLSLARNMFEGHIPTSLINASGLWLIDLTNNNFYGQVPSYLSELANLSDLYLAGNHLEASDNEKWLHAFANCTLLQALNLARNQIKGDIPSSIGNLSTNLQYLNLGVNHFVGVVPPSIGNLHGLTSLWLSKNNLIGTIEEWVGKLRNLELLYLQENNFTGSIPSSIGDLTNLIQFSLGKNSLDGQIPANLGNLRQLDRLNFSYNNLHGSIPYNVGKLRNLVQLDLSHNNLDGNIPSSFIKLQKLKHLDLSDNNFQGIIP |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0610000 | Os02t0610000-00 | Chr02 | 23966075 | 23967661 | + | irgsp1_rep | ||
| CDS seq | ATGGCTGCATTTCTGGCGTTTTTGCTGCTGTTGCTGCTGTCTTACGGAGCTGGCAGCATCCGTTGTGAAGCAACTCTGAACAACACAGCTGATCTGCTCTCCCTGATGGATTTCAAGAAGCATATAACGGAAGATCCAACGCAAGCGATGAGCTCGTGGAACGCAAGCGTCCCCTTCTGCCAGTGGACCGGCGTTAGCTGCAGCCGGAGGCACCCTGGGCGCGTCACGGCGCTGAATCTCTTCAAACTCTCCCTGTCCGGCACAATCAGCTCCTCCCTTGGGAACCTCACGTTTCTCAAGGCACTCAACTTCTCTTCAAACCATTTCTCCGGCAAATTGCCTCCGCTGAACCATCTCCACAGACTGAAAGTCCTGGATCTTAGGCATAACTCACTGCGTGATACTATTCCAGAGGGGCTTGCAAACTGTTCGAGACTAAGGGTGTTGGATCTCTCCTCGAATTCTCTTGTTGGTGAAATTCCCACCAAATTGGGCCTTCTAACGAACCTCTCGAGCTTATGTCTTTCCAATAATTCATTCACAGGAACCATCCCTCCCACCCTTGGCAACATTACCGGCCTAAACTATCTCTCTCTTCAAATAAACCATCTCGAGGGAAGCATTCCCCGTGAGCTTGGGAAATTGTCAGATTTGTTGTCATTGAACATTTTTATGAACAACATATCAGGCCGACTTCCACATGAACTGTTCAATCTGTCTTCTCTACAGACTTTATGGTTGAGTGATAACATGCTAGGGAAAGAAGCACTGCCACCCAACATTGGCGATGTGCTCCCTAATCTCCAATTCCTTTCCTTAGCGAGGAATATGTTTGAAGGTCATATACCAACTTCCCTTATCAACGCTTCGGGGCTATGGTTGATAGACTTGACAAACAACAATTTCTATGGCCAGGTTCCTAGTTATCTCAGTGAGCTTGCAAATCTGTCCGATTTGTATCTAGCGGGTAACCATCTCGAAGCAAGTGACAATGAAAAATGGTTACACGCATTTGCAAATTGTACCCTTCTTCAAGCACTCAACCTAGCTCGTAATCAAATAAAAGGAGATATACCAAGCTCGATTGGTAACCTATCCACCAATCTGCAATATCTGAATTTGGGTGTAAACCATTTTGTAGGAGTGGTTCCACCGAGTATAGGGAACCTTCATGGCCTAACTAGTTTGTGGCTAAGTAAAAACAATCTTATTGGCACAATCGAAGAATGGGTAGGAAAACTGAGGAATCTAGAACTTCTATATCTCCAGGAGAACAATTTCACCGGGTCAATACCATCATCCATCGGTGATCTTACTAACTTGATACAATTTTCTTTGGGAAAGAATAGCTTAGATGGTCAAATACCAGCCAACTTAGGAAATCTTCGGCAGCTAGATCGTCTCAACTTTAGTTACAACAATCTTCATGGTAGTATACCGTACAATGTGGGAAAGCTTCGAAACCTCGTTCAACTAGACCTTAGTCACAACAATCTTGATGGTAACATACCATCCAGTTTTATAAAGCTTCAAAAGCTCAAGCATTTAGACCTTAGTGACAATAATTTCCAAGGTATCATACCTTAA
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| Protein seq | MAAFLAFLLLLLLSYGAGSIRCEATLNNTADLLSLMDFKKHITEDPTQAMSSWNASVPFCQWTGVSCSRRHPGRVTALNLFKLSLSGTISSSLGNLTFLKALNFSSNHFSGKLPPLNHLHRLKVLDLRHNSLRDTIPEGLANCSRLRVLDLSSNSLVGEIPTKLGLLTNLSSLCLSNNSFTGTIPPTLGNITGLNYLSLQINHLEGSIPRELGKLSDLLSLNIFMNNISGRLPHELFNLSSLQTLWLSDNMLGKEALPPNIGDVLPNLQFLSLARNMFEGHIPTSLINASGLWLIDLTNNNFYGQVPSYLSELANLSDLYLAGNHLEASDNEKWLHAFANCTLLQALNLARNQIKGDIPSSIGNLSTNLQYLNLGVNHFVGVVPPSIGNLHGLTSLWLSKNNLIGTIEEWVGKLRNLELLYLQENNFTGSIPSSIGDLTNLIQFSLGKNSLDGQIPANLGNLRQLDRLNFSYNNLHGSIPYNVGKLRNLVQLDLSHNNLDGNIPSSFIKLQKLKHLDLSDNNFQGIIP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0610000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g39670 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0534166 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024890 | SBH | 0.266269 | 0.551824 | 0.649657 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025040 | SBH | 0.095130 | 0.000000 | 0.117828 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0024650 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024300 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024200 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0391600 | SBH | 0.170858 | 0.556558 | 0.514145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004280 | SBH | 0.048594 | 0.017924 | 0.096358 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0420000 | RBH | 0 | 0.1540215 | 0.0606385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004220 | SBH | 0.034492 | 0.108827 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003980 | SBH | 0.070042 | 4.234505 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004260 | SBH | 3.191976 | 29.049385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024040 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024470 | SBH | 0.0 | 0.260956 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024320 | RBH | 0.0 | 0.0 | 0.0 |
