Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0015280 | OGI:01032840 | 5/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:13531492-13531938 | ||||||||
| Gene Symbol | SPARK6, OsSPARK6 | ||||||||||
| DNA seq | atgaacttcaaagccacgcagcagactgacgtctatgcatttggggtgctagtccttgagatcgtcacaggcaagaaggcattgcagaatgatgcacaatttgaccatctcatcgactgggtctggcaccttcaccacaaggggaggcttctcgaagccgtcgatggcgagcttgtccctgctggcaacggcgccgagttgttcaacgccgaagaagccagacgcttgcttctcctaggcttggcgtgcagcaatccgaacccgtcggaccgtgcaacgatggtagaggcggtgcaggtcatcgcgaaatctgcgccggcaccggatgtgccacttgagaagccgaggattgtgtgctatcctcctctggaaggaggatctgcatcggaatccactgattttgtcacagcatggaatagtctgcagatcggcagctcgatggtatag
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| CDS seq | atgaacttcaaagccacgcagcagactgacgtctatgcatttggggtgctagtccttgagatcgtcacaggcaagaaggcattgcagaatgatgcacaatttgaccatctcatcgactgggtctggcaccttcaccacaaggggaggcttctcgaagccgtcgatggcgagcttgtccctgctggcaacggcgccgagttgttcaacgccgaagaagccagacgcttgcttctcctaggcttggcgtgcagcaatccgaacccgtcggaccgtgcaacgatggtagaggcggtgcaggtcatcgcgaaatctgcgccggcaccggatgtgccacttgagaagccgaggattgtgtgctatcctcctctggaaggaggatctgcatcggaatccactgattttgtcacagcatggaatagtctgcagatcggcagctcgatggtatag
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| Protein seq | MNFKATQQTDVYAFGVLVLEIVTGKKALQNDAQFDHLIDWVWHLHHKGRLLEAVDGELVPAGNGAELFNAEEARRLLLLGLACSNPNPSDRATMVEAVQVIAKSAPAPDVPLEKPRIVCYPPLEGGSASESTDFVTAWNSLQIGSSMV |
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| Function | Probable L-type lectin-domain containing receptor kinase S.5 [UniProtKB/Swiss-Prot:Q9FG33] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0015280 | OsLiXu_01g0015280.01 | Chr01 | 13531492 | 13531938 | + | NAM | ||
| CDS seq | atgaacttcaaagccacgcagcagactgacgtctatgcatttggggtgctagtccttgagatcgtcacaggcaagaaggcattgcagaatgatgcacaatttgaccatctcatcgactgggtctggcaccttcaccacaaggggaggcttctcgaagccgtcgatggcgagcttgtccctgctggcaacggcgccgagttgttcaacgccgaagaagccagacgcttgcttctcctaggcttggcgtgcagcaatccgaacccgtcggaccgtgcaacgatggtagaggcggtgcaggtcatcgcgaaatctgcgccggcaccggatgtgccacttgagaagccgaggattgtgtgctatcctcctctggaaggaggatctgcatcggaatccactgattttgtcacagcatggaatagtctgcagatcggcagctcgatggtatag
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| Protein seq | MNFKATQQTDVYAFGVLVLEIVTGKKALQNDAQFDHLIDWVWHLHHKGRLLEAVDGELVPAGNGAELFNAEEARRLLLLGLACSNPNPSDRATMVEAVQVIAKSAPAPDVPLEKPRIVCYPPLEGGSASESTDFVTAWNSLQIGSSMV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0568400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g28730 | SBH | 0.239480 | 0.492873 | 0.201468 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0548600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002030 | SBH | 0.149401 | 0.000000 | 1.029012 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001910 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002040 | SBH | 0.561902 | 1.008352 | 1.303140 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001930 | SBH | 0.000000 | 0.045833 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002000 | SBH | 2.235355 | 4.015699 | 5.105312 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0222100 | SBH | 0.050279 | 0.4694305 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0013020 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0025000 | SBH | 2.1046185 | 14.408624 | 0.470085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0015250 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001990 | SBH | 0.150496 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002040 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002120 | SBH | 0.086938 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
