Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0222100 | OGI:01040330 | 15/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:13704274-13705298 | ||||||||
| Gene Symbol | RLCK34, OsRLCK34, Gnk2RLK-1, SPARK6, OsSPARK6, Gnk2RLK-3 | ||||||||||
| DNA seq | TATCATTCCGTTAACGCCATATTTTTAAATTTGTTTAGTGTGGACTCTGGAGAAACCGAATAATAATTTCCTTTGGAGTCACGTTGCTTTCGTCGTCGGGAGCATTTTCCGATTAATTTGGACAGCAAAAGCTACAAAATATCACTGCACACGATTGCTCAAATTACTGTGCGTTACCTGTAGTTTTTTACACAATTATTTTGCATTAAAATCTGATGGACGCACATGAATCATTTCTTTTCAGTGGATACATCGCGCCCGAGTACTGCTCCCAAAATGTTTATTCAACAAAGTCTGATGTTTTTAGCTTTGGCATTTTGGTTCTTGAGATCATAAGTGGGAAAAGAGCCGTGGGTTCATACAAATTATCTGGAAGATCATACGAGCTCAGGAGATATGTGAGTGAAAATCTCCTAAAAACTCTGCATATTCATCCTTTCCTACTGAAGCTGCATGTATCACTGTTGCTCGTTTATGTTTACCCTCTGAAACTTTATATTGTTTAATATTTGCTAATAGGCTTGGCAACTTTGGAAAGAAGAGAGATGCGACGAGTTGGTGGATCCATCTTTTGGAGAAGATTACCAAGAAATGGACATTATTAGGTGCATTCAGGTGGCACTTCTGTGTGTCCAAGACAGTGCAGAGGACAGGCCAACGATGCACGATGTAACGACGATGCTAAGCAACGGAAACAGGAGGTTGCTCATGCCTGCACAACCAGGTTCATTCAACATAGATATTGGCGATCCAGAGGAGCTCTGATGATGAAACCAGACTGACAGATCGTCCAGACAAATCAAACGTGTTTAGCCGGACGAATTCGATGTAGACAAATTAAATCAAATTTAGATCAAGCTATATATAGGACAATTATTCATGTATAAAGTGTTGTGTTCGCCACCTGTTGGAACTAAACTGATTGCAGATTAATTTCCCATGCTCTTGGCTAATTTGTACAGATTGAAAATCAAACTGCTTTGCTGTATTTTCCAACTAGAGGATTCATGAACAACACAGCCCAG
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| CDS seq | ATGGACGCACATGAATCATTTCTTTTCAGTGGATACATCGCGCCCGAGTACTGCTCCCAAAATGTTTATTCAACAAAGTCTGATGTTTTTAGCTTTGGCATTTTGGTTCTTGAGATCATAAGTGGGAAAAGAGCCGTGGGTTCATACAAATTATCTGGAAGATCATACGAGCTCAGGAGATATGCTTGGCAACTTTGGAAAGAAGAGAGATGCGACGAGTTGGTGGATCCATCTTTTGGAGAAGATTACCAAGAAATGGACATTATTAGGTGCATTCAGGTGGCACTTCTGTGTGTCCAAGACAGTGCAGAGGACAGGCCAACGATGCACGATGTAACGACGATGCTAAGCAACGGAAACAGGAGGTTGCTCATGCCTGCACAACCAGGTTCATTCAACATAGATATTGGCGATCCAGAGGAGCTCTGA
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| Protein seq | MDAHESFLFSGYIAPEYCSQNVYSTKSDVFSFGILVLEIISGKRAVGSYKLSGRSYELRRYAWQLWKEERCDELVDPSFGEDYQEMDIIRCIQVALLCVQDSAEDRPTMHDVTTMLSNGNRRLLMPAQPGSFNIDIGDPEEL |
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| Function | Putative cysteine-rich receptor-like protein kinase 20 [UniProtKB/Swiss-Prot:O65479] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0222100 | OsMH63_01T0222100.1 | Chr01 | 13704274 | 13705298 | + | maker | ||
| CDS seq | ATGGACGCACATGAATCATTTCTTTTCAGTGGATACATCGCGCCCGAGTACTGCTCCCAAAATGTTTATTCAACAAAGTCTGATGTTTTTAGCTTTGGCATTTTGGTTCTTGAGATCATAAGTGGGAAAAGAGCCGTGGGTTCATACAAATTATCTGGAAGATCATACGAGCTCAGGAGATATGCTTGGCAACTTTGGAAAGAAGAGAGATGCGACGAGTTGGTGGATCCATCTTTTGGAGAAGATTACCAAGAAATGGACATTATTAGGTGCATTCAGGTGGCACTTCTGTGTGTCCAAGACAGTGCAGAGGACAGGCCAACGATGCACGATGTAACGACGATGCTAAGCAACGGAAACAGGAGGTTGCTCATGCCTGCACAACCAGGTTCATTCAACATAGATATTGGCGATCCAGAGGAGCTCTGA
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| Protein seq | MDAHESFLFSGYIAPEYCSQNVYSTKSDVFSFGILVLEIISGKRAVGSYKLSGRSYELRRYAWQLWKEERCDELVDPSFGEDYQEMDIIRCIQVALLCVQDSAEDRPTMHDVTTMLSNGNRRLLMPAQPGSFNIDIGDPEEL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.050279 | 0.4694305 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0117400 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g03690 | SBH | 0.300203 | 0.494376 | 0.209436 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0117400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0015770 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0015540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015780 | RBH | 1.027177 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002000 | SBH | 2.235355 | 4.015699 | 5.105312 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0538200 | SBH | 4.0194745 | 85.391426 | 0.6258735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0015190 | RBH | 0.0 | 0.058068 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0217200 | RBH | 0.434747 | 0.1747105 | 0.276752 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0015190 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0015040 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0015230 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015220 | RBH | 0.106117 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0014970 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G015380 | RBH | 0.000000 | 0.0 | 0.139559 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015140 | RBH | 0.534619 | 0.0 | 0.0 |
