Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0568400 | OGI:01068690 | 5/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:21837626-21839347 | ||||||||
| Gene Symbol | RLCK34, OsRLCK34, Gnk2RLK-1, Gnk2RLK-3 | ||||||||||
| DNA seq | CTAGCTAGAAATACTAGTGTAGAACATCGTGGGGGTGACAGCGCCACTATGATTACTTGATGTGGGAACTTGTACGTTGTAATATGCCGGGGGTTCCTTAGGGACGTCCAGGGCCTCCGTGTTGCTCAGCATCGCGACGATCTTGTCTATGTTCGGCCGATGCTCGGGGTTGGCCTGCACGCAGAGAAGGGCCATCTGGACGTACCTGATTAACACAGCGTCCTCAATGTTTTCTCCTGCTGATATTAACGAGCGGTCCACAAGGTCCTTGTATCTTTGCGCATCCCACAGTTGCCATGCCTGCCAGTTTATCATCAGAATAGTGTTCAACTGTTTCTTTCTCTGTTTTGAAGGAACAGTTAATTGTTTCTTTCTTAAATATATGTAATGAAAATAATTAGATTTTTTATCAAAAGACAAGGACCATGCAGTGCGGATGCAGTGTTTTCAAATAAATAAATATGATGTGTTCTAATATTTTTAATGAAAATATATGCATATATATCTAATAGAAGAACTCTGTTATCCTTTAGGATTTCTTACAAAGCCGGATCAATAAACGATCTAAGCACTAAAAATGCAAGTATATGTCTAAAACTATATATTATCAAGTGTTTCTACAAATGTACTATTCATGTATACATGATGCAAATTCTTAAACCAGAAATGGCATGTACTTGCCTGCATATATAGATCTTTCTACAGAATAGAGAAGATGAGCACAGAGCACCATCCCGTATTTTATCAAACTAGAGATAATAATTACTTACACAGGTCAACAGGTTGTCTGATCTTCCTTGTTGAAAGAAGCAGGCAGAGTTCACCTTTGTCCCACTTATGATTTCCAAGATAAGCACGCCAAGGCTATACACATCAGACTTATCGGAGAAGGTGCCGGTAAGTAACACCTCAGGTGCAATGTAGCCACTGATAATATTTCAGGCAAAATTTAATCATTAGTAGCATATGTAGTGTAATTAAGGACGATTTGAGCAAGCTAGACAAAGGTAAAGCTAGGCCAGGATTAAATTAATTAATAGAAGGTGAGCTTCTTTGTTCTAAAATCAGTTATGTATGTACGCGCAATTAGTTTCTTACAATGATCCGCATCCTTTGGTTGTTGCTGACTCCATAAGATTTGGGCAGAATATCTTAGCGATTCCGAAATCTGAGATTTTTGCATTCATTGAAGCATCGAGCAGAATGTTGTTGACCTTAATGTCTCTATGAACGATGCATGTATTCTGTTTTGCTAATCTGTGGAGGTAGAGAAGCCCCTGGGCTATGCTATCAATTACACGGAGGCGTGTAGACCAATCTAGCAGCCGGGATTTTCTTTCGGGATCTGCAAGTTTAATCTTTTCAAATAATATCTGAACATATAACTAATAAAATATCGGGAAAATATGGATAGATTTTAGAAATCACTCAGTTTAAGTGTTTTCAATAATTAAGATATATACACGCGCGCTGACAAATTAAAGGCAAAATAGTCATTTTAGAAAAAAAATCAAACTATTAATTCACGGTTAACCAACAGAAAATGAATATATAAGTGATCAAAATGAATATATATGTAGGTAACAAGGCAAAATTTAGTGGAGTAGAAAGGATTGAGTGAAAACACATGATCTTATAAGGATTTTTCTTTTCGTAATATAAGGGTTGGGAACTTGGGATATATATACCAGAAAACACATCATCCAAGCTTCCGTTCTCCAT
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| CDS seq | ATGGAGAACGGAAGCTTGGATGATGTGTTTTCTGATCCCGAAAGAAAATCCCGGCTGCTAGATTGGTCTACACGCCTCCGTGTAATTGATAGCATAGCCCAGGGGCTTCTCTACCTCCACAGATTAGCAAAACAGAATACATGCATCGTTCATAGAGACATTAAGGTCAACAACATTCTGCTCGATGCTTCAATGAATGCAAAAATCTCAGATTTCGGAATCGCTAAGATATTCTGCCCAAATCTTATGGAGTCAGCAACAACCAAAGGATGCGGATCATTTGGCTACATTGCACCTGAGGTGTTACTTACCGGCACCTTCTCCGATAAGTCTGATGTGTATAGCCTTGGCGTGCTTATCTTGGAAATCATAAGTGGGACAAAGGCATGGCAACTGTGGGATGCGCAAAGATACAAGGACCTTGTGGACCGCTCGTTAATATCAGCAGGAGAAAACATTGAGGACGCTGTGTTAATCAGGTACGTCCAGATGGCCCTTCTCTGCGTGCAGGCCAACCCCGAGCATCGGCCGAACATAGACAAGATCGTCGCGATGCTGAGCAACACGGAGGCCCTGGACGTCCCTAAGGAACCCCCGGCATATTACAACGTACAAGTTCCCACATCAAGTAATCATAGTGGCGCTGTCACCCCCACGATGTTCTACACTAGTATTTCTAGCTAG
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| Protein seq | MENGSLDDVFSDPERKSRLLDWSTRLRVIDSIAQGLLYLHRLAKQNTCIVHRDIKVNNILLDASMNAKISDFGIAKIFCPNLMESATTKGCGSFGYIAPEVLLTGTFSDKSDVYSLGVLILEIISGTKAWQLWDAQRYKDLVDRSLISAGENIEDAVLIRYVQMALLCVQANPEHRPNIDKIVAMLSNTEALDVPKEPPAYYNVQVPTSSNHSGAVTPTMFYTSISS |
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| Function | Cysteine-rich receptor-like protein kinase 10 [UniProtKB/Swiss-Prot:Q8GYA4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0568400 | OsNip_01t0568400-00 | Chr01 | 21837626 | 21839347 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGAACGGAAGCTTGGATGATGTGTTTTCTGATCCCGAAAGAAAATCCCGGCTGCTAGATTGGTCTACACGCCTCCGTGTAATTGATAGCATAGCCCAGGGGCTTCTCTACCTCCACAGATTAGCAAAACAGAATACATGCATCGTTCATAGAGACATTAAGGTCAACAACATTCTGCTCGATGCTTCAATGAATGCAAAAATCTCAGATTTCGGAATCGCTAAGATATTCTGCCCAAATCTTATGGAGTCAGCAACAACCAAAGGATGCGGATCATTTGGCTACATTGCACCTGAGGTGTTACTTACCGGCACCTTCTCCGATAAGTCTGATGTGTATAGCCTTGGCGTGCTTATCTTGGAAATCATAAGTGGGACAAAGGCATGGCAACTGTGGGATGCGCAAAGATACAAGGACCTTGTGGACCGCTCGTTAATATCAGCAGGAGAAAACATTGAGGACGCTGTGTTAATCAGGTACGTCCAGATGGCCCTTCTCTGCGTGCAGGCCAACCCCGAGCATCGGCCGAACATAGACAAGATCGTCGCGATGCTGAGCAACACGGAGGCCCTGGACGTCCCTAAGGAACCCCCGGCATATTACAACGTACAAGTTCCCACATCAAGTAATCATAGTGGCGCTGTCACCCCCACGATGTTCTACACTAGTATTTCTAGCTAG
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| Protein seq | MENGSLDDVFSDPERKSRLLDWSTRLRVIDSIAQGLLYLHRLAKQNTCIVHRDIKVNNILLDASMNAKISDFGIAKIFCPNLMESATTKGCGSFGYIAPEVLLTGTFSDKSDVYSLGVLILEIISGTKAWQLWDAQRYKDLVDRSLISAGENIEDAVLIRYVQMALLCVQANPEHRPNIDKIVAMLSNTEALDVPKEPPAYYNVQVPTSSNHSGAVTPTMFYTSISS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g38900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0568400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0022170 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0021800 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0022110 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0021490 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0021300 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0370400 | RBH | 0.004568 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019640 | SBH | 0.044140 | 0.107338 | 0.614156 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0357600 | RBH | 0 | 0.008445 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0019660 | SBH | 0.0 | 0.172190 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019570 | SBH | 0.460221 | 9.503056 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0019840 | SBH | 6.767835 | 10.619205 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0021480 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0021230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021540 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0021260 | RBH | 0.0 | 0.0 | 0.0 |
