Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0548600 | OGI:01064920 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:20464727-20466410 | ||||||||
| Gene Symbol | SPARK6, OsSPARK6, - | ||||||||||
| DNA seq | GAAGAATGTATCTCTGCTACCAACATTGACAACTTTCACATGTACATCACACAAAACTGTAGACCGTCTTGATATATATTCCTATGATATTTTTTTTAAAAAAAAAAAAGAAGCTTAGCTTATCTTCCACTTAGATAGGACCGAGATGAACCTGATACTGAATGAGCCGAACGTGCGGACAGCAACCGAGACTGTTCGCCTTGTTTGATATCCTCAAAGGCCTCGACATCCAAAAATGGAGGATCACTCAAGATAATCTCCACATCATGCCTGTGGCTTCTCAGCAACTCCACAACCTTCGTCATTGTAGGCCTGTCGCCAGCGTTTGCTTGGGTGCATGACAGCCCAATCTGCACGACATGCATGACCTCATCCCTGATGGTATCCTCGTAGATGCTGCGGTCAGCGATCATTTCTACTGCTTTGTTCTTGTAGTGGTTCCATACCTTGAATGTAAAGAAGATATTCACATTAAACATATTGCAAGATGGAATTGCTTAGGACCGACTGAAATTAAAAAGATAAAAATGAACTTAACAGTGTCACCTTTTTTTTTGGGATAAAGTCAAGTAAATACGGTGGTTTGAACTTTGAACAAGCATCACTATGCTTTGTAACTTGCCTTTATTCAATGCTTTTGCTCATCCATCATCATGTTGTTATACAAGTCAAATAAGCAACTTTTGAAGAAAAAAATTGATGTAACTGTTTACTTATATCTGTAGAATAACCATAACCATATAAAAGGAGGAATGACGCTCAATGGAACTTATCCATTTGCTATTTTCATCTATTATTTTCCCCAAGCTAAAGTAATAGGGCAGAACTCCATATCAGGTCAGCATTAGTGATTGCTGTACTTCTAGAGTTCTAGTGTTAACTGAAGTATTATATCACTACATTGCACCTAGAATTCTTAACCGTCTTGTTCTTCTAGTGCAGTTGACCCCTCTTTTTTTAAGAAATGATTATGGTTATGGATTTAGCTGCCTTTTCCATTTCACAAAATTTTATTCAGGAGTTGAAAAACTGCGTTTAATGATAGGTATATTTCTATATTGATTCATTCCGTTATTAGCACTTCGACCTTGATAGCCATATTAAACCCAAAAGGGGTAACGCTGAATATCGATACAATCATGCTTCTCAAAGCAGAATAGGAAGTCAAAACAAGTTTAAGAATGAGATCAGTAAGGTAAGAAAGAGAGCAGTACCTTTGTTAACAAGAAGTGACCTCCATGTGAACCAATTGAGCCGCTACATCTTTGTCCTGTTACAAGCTCAAGAACCAGAATACCATAGCTGTAGACATCAGCCTTCTCTGTAAGATGGCCATGTGCCAAATATTCAGGAGCCATGTATCCTCTGAAACAAGCCAACAACGTTCTTGAGTGAGCTTAATAATTATTGAGGAAGAACACTGCAAGAATATGAAAAGTTAGTCTTACAGTGTTCCAGCAACACCCGTGGTGAGATGAGTTCTATCCTCTCCAAAAGCTCTTGCAAGGCCAAAATCTGTTATCTTGGGCTTAAACTTATCATCCAATAAAATATTACTGGCTTTGATATCTCTGTGGATAATCCTTGTTTCTGACTCCTCATGGAGGTAAGAAAGTCCCTCCGCTATGCCTTGAATGATATCAACCCTCAAATTCCAGGTTAAATTTCTGCTACGACTTGCATC
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| CDS seq | GATGCAAGTCGTAGCAGAAATTTAACCTGGAATTTGAGGGTTGATATCATTCAAGGCATAGCGGAGGGACTTTCTTACCTCCATGAGGAGTCAGAAACAAGGATTATCCACAGAGATATCAAAGCCAGTAATATTTTATTGGATGATAAGTTTAAGCCCAAGATAACAGATTTTGGCCTTGCAAGAGCTTTTGGAGAGGATAGAACTCATCTCACCACGGGTGTTGCTGGAACACTAGGATACATGGCTCCTGAATATTTGGCACATGGCCATCTTACAGAGAAGGCTGATGTCTACAGCTATGGTATTCTGGTTCTTGAGCTTGTAACAGGACAAAGATGTAGCGGCTCAATTGGTTCACATGGAGGTCACTTCTTGTTAACAAAGGTATGGAACCACTACAAGAACAAAGCAGTAGAAATGATCGCTGACCGCAGCATCTACGAGGATACCATCAGGGATGAGGTCATGCATGTCGTGCAGATTGGGCTGTCATGCACCCAAGCAAACGCTGGCGACAGGCCTACAATGACGAAGGTTGTGGAGTTGCTGAGAAGCCACAGGCATGATGTGGAGATTATCTTGAGTGATCCTCCATTTTTGGATGTCGAGGCCTTTGAGGATATCAAACAAGGCGAACAGTCTCGGTTGCTGTCCGCACGTTCGGCTCATTCAGTATCAGGTTCATCTCGGTCCTATCTAAGTGGAAGATAA
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| Protein seq | DASRSRNLTWNLRVDIIQGIAEGLSYLHEESETRIIHRDIKASNILLDDKFKPKITDFGLARAFGEDRTHLTTGVAGTLGYMAPEYLAHGHLTEKADVYSYGILVLELVTGQRCSGSIGSHGGHFLLTKVWNHYKNKAVEMIADRSIYEDTIRDEVMHVVQIGLSCTQANAGDRPTMTKVVELLRSHRHDVEIILSDPPFLDVEAFEDIKQGEQSRLLSARSAHSVSGSSRSYLSGR |
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| Function | Cysteine-rich receptor-like protein kinase 2 [UniProtKB/Swiss-Prot:Q9CAL3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0548600 | Os01t0548600-01 | Chr01 | 20464727 | 20466410 | - | irgsp1_rep | ||
| CDS seq | GATGCAAGTCGTAGCAGAAATTTAACCTGGAATTTGAGGGTTGATATCATTCAAGGCATAGCGGAGGGACTTTCTTACCTCCATGAGGAGTCAGAAACAAGGATTATCCACAGAGATATCAAAGCCAGTAATATTTTATTGGATGATAAGTTTAAGCCCAAGATAACAGATTTTGGCCTTGCAAGAGCTTTTGGAGAGGATAGAACTCATCTCACCACGGGTGTTGCTGGAACACTAGGATACATGGCTCCTGAATATTTGGCACATGGCCATCTTACAGAGAAGGCTGATGTCTACAGCTATGGTATTCTGGTTCTTGAGCTTGTAACAGGACAAAGATGTAGCGGCTCAATTGGTTCACATGGAGGTCACTTCTTGTTAACAAAGGTATGGAACCACTACAAGAACAAAGCAGTAGAAATGATCGCTGACCGCAGCATCTACGAGGATACCATCAGGGATGAGGTCATGCATGTCGTGCAGATTGGGCTGTCATGCACCCAAGCAAACGCTGGCGACAGGCCTACAATGACGAAGGTTGTGGAGTTGCTGAGAAGCCACAGGCATGATGTGGAGATTATCTTGAGTGATCCTCCATTTTTGGATGTCGAGGCCTTTGAGGATATCAAACAAGGCGAACAGTCTCGGTTGCTGTCCGCACGTTCGGCTCATTCAGTATCAGGTTCATCTCGGTCCTATCTAAGTGGAAGATAA
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| Protein seq | DASRSRNLTWNLRVDIIQGIAEGLSYLHEESETRIIHRDIKASNILLDDKFKPKITDFGLARAFGEDRTHLTTGVAGTLGYMAPEYLAHGHLTEKADVYSYGILVLELVTGQRCSGSIGSHGGHFLLTKVWNHYKNKAVEMIADRSIYEDTIRDEVMHVVQIGLSCTQANAGDRPTMTKVVELLRSHRHDVEIILSDPPFLDVEAFEDIKQGEQSRLLSARSAHSVSGSSRSYLSGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0548600 | RBH | 0.0 | 0.000000 | 3.169005 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g36790 | RBH | 0.0 | 0.375987 | 0.442090 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020990 | RBH | 0.0 | 0.000000 | 0.195246 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020600 | RBH | 0.0 | 0.0 | 0.432462 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020930 | RBH | 0.000000 | 0.0 | 0.328258 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0020320 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0020200 | RBH | 0.866156 | 1.038559 | 1.035833 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0347600 | RBH | 0.376895 | 1.436506 | 4.3689765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0020160 | RBH | 0.0 | 0.079260 | 0.091655 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0342800 | RBH | 1.0169645 | 8.6723985 | 1.195197 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020170 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0020080 | RBH | 0.090387 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0020330 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0020240 | RBH | 0.226615 | 0.117908 | 0.227779 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0020130 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021040 | RBH | 0.0 | 0.0 | 0.350687 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0020770 | RBH | 0.000000 | 1.959862 | 0.970009 |
