Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0015250 | OGI:01032840 | 5/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:13676391-13676837 | ||||||||
| Gene Symbol | RLCK30, OsRLCK30, SPARK6, OsSPARK6 | ||||||||||
| DNA seq | atgaacttcaaagccacgcagcagactgacgtctatgcatttggggtgctagtccttgagatcgtcacaggcaagaaggcattgcagaatgatgcacaatttgaccatctcatcgactgggtctggcaccttcaccacaaggggaggcttctcgaagccgtcgatggcgagcttgtccctgctggcaacggcgccgagttgttcaacgccgaagaagccagacgcttgcttctcctaggcttggcgtgcagcaatccgaacccgtcggaccgtgcaacgatggtagaggcggtgcaggtcatcgcgaaatctgcgccggcaccggatgtgccacttgagaagccgaggattgtgtgctatcctcctctggaaggaggatctgcatcggaatccactgattttgtcacagcatggaatagtctgcagatcggcagctcgatggtatag
More
|
||||||||||
| CDS seq | atgaacttcaaagccacgcagcagactgacgtctatgcatttggggtgctagtccttgagatcgtcacaggcaagaaggcattgcagaatgatgcacaatttgaccatctcatcgactgggtctggcaccttcaccacaaggggaggcttctcgaagccgtcgatggcgagcttgtccctgctggcaacggcgccgagttgttcaacgccgaagaagccagacgcttgcttctcctaggcttggcgtgcagcaatccgaacccgtcggaccgtgcaacgatggtagaggcggtgcaggtcatcgcgaaatctgcgccggcaccggatgtgccacttgagaagccgaggattgtgtgctatcctcctctggaaggaggatctgcatcggaatccactgattttgtcacagcatggaatagtctgcagatcggcagctcgatggtatag
More
|
||||||||||
| Protein seq | MNFKATQQTDVYAFGVLVLEIVTGKKALQNDAQFDHLIDWVWHLHHKGRLLEAVDGELVPAGNGAELFNAEEARRLLLLGLACSNPNPSDRATMVEAVQVIAKSAPAPDVPLEKPRIVCYPPLEGGSASESTDFVTAWNSLQIGSSMV |
||||||||||
| Function | Probable L-type lectin-domain containing receptor kinase S.5 [UniProtKB/Swiss-Prot:Q9FG33] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0015250 | OsLima_01g0015250.01 | Chr01 | 13676391 | 13676837 | + | NAM | ||
| CDS seq | atgaacttcaaagccacgcagcagactgacgtctatgcatttggggtgctagtccttgagatcgtcacaggcaagaaggcattgcagaatgatgcacaatttgaccatctcatcgactgggtctggcaccttcaccacaaggggaggcttctcgaagccgtcgatggcgagcttgtccctgctggcaacggcgccgagttgttcaacgccgaagaagccagacgcttgcttctcctaggcttggcgtgcagcaatccgaacccgtcggaccgtgcaacgatggtagaggcggtgcaggtcatcgcgaaatctgcgccggcaccggatgtgccacttgagaagccgaggattgtgtgctatcctcctctggaaggaggatctgcatcggaatccactgattttgtcacagcatggaatagtctgcagatcggcagctcgatggtatag
More
|
|||||||
| Protein seq | MNFKATQQTDVYAFGVLVLEIVTGKKALQNDAQFDHLIDWVWHLHHKGRLLEAVDGELVPAGNGAELFNAEEARRLLLLGLACSNPNPSDRATMVEAVQVIAKSAPAPDVPLEKPRIVCYPPLEGGSASESTDFVTAWNSLQIGSSMV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0548600 | SBH | 0.0 | 0.000000 | 3.169005 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g28730 | SBH | 0.239480 | 0.492873 | 0.201468 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0548600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0010510 | SBH | 0.215392 | 1.487606 | 2.594079 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0010140 | SBH | 0.201839 | 0.0 | 1.444504 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0010480 | SBH | 0.000000 | 0.000000 | 4.174712 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0010000 | SBH | 0.021244 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0222100 | SBH | 0.050279 | 0.4694305 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0013020 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0133500 | SBH | 3.3641335 | 0.162103 | 1.020925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0010000 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015280 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
