Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0019660 | OGI:01059280 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:21457549-21461297 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AaaaaattatatcaggattgcaatcagctatatgctgatcttcactacagtgcattaacatgctaatagggtgtttttggaaatgccttccaacatgctataggccagggtgggagacctattgataatttttacacttacaagcttgtttgctttctcttcttttcctgttttatcaacagttttaatctggccaaacaacaatggaaatgcatgctaacgggatgaattactatcaatgtatgttccctcacctctatatctctttttccttttcccatttcccccTtaatcatgtaacattctaacttctcatttctatcaacaaaatggctatagggtagagctgctctaccttcttatgttAaaaataaaatcattttgagtacctccaaaggacacacgaaatagtatcaaatttatattaacaagagagtcacatgtcgtcactaTtttccccttttgaccacttccacttgttcaatgatccgtgaatgtgcatatactatgcgtagctaaataaacccaactaatggagggtcaattcatttagttatcatgcaagatttttagtttaactatttcagatttgcatagggtctagggtttagggacctcattAacaacctctcccctgctgatttgttgctttgattttttactgAaaatttgcctagctggtttcaacagagtcctcttctccggtcatctcctttcttcacggctgatcacaatctaaaaaggtgtctttctggtagggttgctactgctactccactggatctgacatctgggaggggcgcaccaaccctAaaaaaaAGCTACAGCATTTCCTCTGATTTGTGTTTATATTGCTTGCTGTTTCTCCTCCAACCCCTTCGCTCTGCGATTTCCAACCACCACACGCCGGCCATCACCAAGTGCCCACATGTCAACCGAGTTCTCCAGCTTTACTGTTAGGTTCCTATGCACAAATCCATCCATATCCACTAGATAGAGCAAACAAATGTTTTGCCATATGAACCCTAGCCTAATATAAAGATCCCTTCTGATTACATTTTTGGGTTCTTGCAATTATCAGTTTTTTACGGCCTCACTCACTGCCAAATGATTTCTCCTGCCACAGGATTAGGGAATCCATGCACTGCAGTTGCCCGCGGTTTCTCATCACCAAACATATTTGCAGGTACAGTTTACTACCGTTGTCTTCTACGAATAACGGCACTGACAATAAaaaaaaaaatactatactgatatgaactgaaaacaatcttgctaagtgtaaaattataaacccagaacaaacaaaatcaattgttattttatttgcgcctacaaaaggatatgttatattaataccttttcttagcaaatttattctagatcccagccttcgtcatgcacaaagttctatacgatctttttccactatcaatatcgttttacatattgattaaatttctcctggtacatcaccgtatatattaccatatccatatacatcgattgtaacgcaggcctatttaacatgtcttataagttaacacaaaAGactatggtgcccatcattacatagtttatagctagcgatgcgaaagtaattaaggctagaataaataaaataatctcagaggcgattagagcagttgctacccctctactgtgatcactatttttagacaagctcaagtcctccaaacatgatcagtataccacacggatcttaaaatatcacagcacagtttgcaacctttatagcaaggtcttaccgaccagtcctctaaccaatatatgattttgttcccactctgtgtaattgtaatttaaagttattccttctgttaaacctcatatcatagagatcatgcttactgtttaaataccttcacaaagaaacatatatcagaagtacctaaaaccttgctatagcagccattggctcTtcttcttcatcgtcagccgcagtgcatgcatcacttagcctaatcttcttcacctttacttattattgtatccttagatttctcagacgttgctttatcttcccgtgcaaacacacacacAcacacacacaaaacccaacataaatatgtattcacagattcaatctgcaccttgttttgcatagttatggatccaccaacattcttcacgatctggatgaccgcggcaaatcagcactgtgcggtaaaatctaagacaaaactatcctattcaatatataaagtatcctatatacaacaatgttaatgtatgttctttattggccagtgtattccacccgcaattgtgcaagcatatgaactcaaggacggtcaaaaaagttggtgacagcacatcaccttaaggtctacattgaactgaggaaagcatctaacaacatgtacatgacagcaggatgggcccagtttatagaagcaactggtctgcaggttcaagagcccgccgttttcagggttttatcaacctcgaagatgcatttcatcatatttgcaaaggacggttatcttagatgcccagttccagacaaacccagagactctgaaccgaccagacaatcgtttcgcacatcaagGTAAATGAACCGTATCTTACAGCTCATCTCCTGGCAAAACaaaaaaaaaaaaaaacatcctgctgtatactgccatatctgcatccattagcctatcaactttattacctactcttgtcaatttctttttttttaaaacattatttcacttgcagggaaagccactacaattacttcgcctatccaatgctgcatcaaagggaagctaaaacatgatggcacatccacttctgcaagtacacatggttcacttgatattctcaatatattcatcaccatctcttttcacctacactgctatgttcattcacatcccttgtaacaggcaacaacaggcgcactatcagcgaaatgtgtttctgcaccaaggacatcaggttatcagctgaagtcaagaactacatcaaagatattgcgccattcctccagccctcagacaaattttatgtgactgccataaatgcaacattcatgaaggaagggagagtggtaaaatcactagctcattcctcttttctgcactatacacttaaaaactaatgttctgtttttatccagtacttagtaaaggaattttcaaagaagtacattgcaccgcttgcacgatgaaaagacagcacaaatcaaggtacgaattcctggacacccctcatccaccatggttctccacagatgctacaacttgaaatcgggatgaacccgttttgtgacaatcaacaacttccagattggaacaatttgcatattccacttttacaagacagatcgcctggaagcaacggcagatgtcttgtgaaggcaatatgcatcggctacaacctgtcatcctcctgttatcgccaagtgactctgccagggctttctaaatatctccagcctgtttctatgtttattattagcgccctttatagcctttctatagacatctaattaccttgtaaatattgcacccaagctagcatgtgtgcctctcactagacaccagggtcgaacaacatctccagtgctgtaatcagttattttggtcgtagctatatgcaatggacagcctatgtgtatctgttccataccctttaatgccccgtcggtccttcgtattataccatccatggttcactagctgctcgatattttcgcgctgttacatactatgcgtgtgcaattatatgcaggg
More
|
||||||||||
| CDS seq | atgttctttattggccagtgtattccacccgcaattgtgcaagcatatgaactcaaggacgcacatcaccttaaggtctacattgaactgaggaaagcatctaacaacatgtacatgacagcaggatgggcccagtttatagaagcaactggtctgcaggttcaagagcccgccgttttcagggttttatcaacctcgaagatgcatttcatcatatttgcaaaggacgatgcccagttccagacaaacccagagactctgaaccgaccagacaatcgtttcgcacatcaagggaaagccactacaattacttcgcctatccaatgctgcatcaaagggaagctaaaacatgatggcacatccacttctgcaagcaacaacaggcgcactatcagcgaaatgtgtttctgcaccaaggacatcaggttatcagctgaagtcaagaactacatcaaagatattgcgccattcctccagccctcagacaaattttatgtgactgccataaatgcaacattcatgaaggaagggagagtgtacttagtaaaggaattttcaaagaagtacattgcaccgcttgcacgatga
More
|
||||||||||
| Protein seq | MFFIGQCIPPAIVQAYELKDAHHLKVYIELRKASNNMYMTAGWAQFIEATGLQVQEPAVFRVLSTSKMHFIIFAKDDAQFQTNPETLNRPDNRFAHQGKATTITSPIQCCIKGKLKHDGTSTSASNNRRTISEMCFCTKDIRLSAEVKNYIKDIAPFLQPSDKFYVTAINATFMKEGRVYLVKEFSKKYIAPLAR |
||||||||||
| Function | Putative B3 domain-containing protein LOC_Os07g12820 [UniProtKB/Swiss-Prot:Q84YL3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0019660 | OsLaMu_01g0019660.01 | Chr01 | 21459802 | 21461297 | + | NAM | ||
| CDS seq | atgttctttattggccagtgtattccacccgcaattgtgcaagcatatgaactcaaggacgcacatcaccttaaggtctacattgaactgaggaaagcatctaacaacatgtacatgacagcaggatgggcccagtttatagaagcaactggtctgcaggttcaagagcccgccgttttcagggttttatcaacctcgaagatgcatttcatcatatttgcaaaggacgatgcccagttccagacaaacccagagactctgaaccgaccagacaatcgtttcgcacatcaagggaaagccactacaattacttcgcctatccaatgctgcatcaaagggaagctaaaacatgatggcacatccacttctgcaagcaacaacaggcgcactatcagcgaaatgtgtttctgcaccaaggacatcaggttatcagctgaagtcaagaactacatcaaagatattgcgccattcctccagccctcagacaaattttatgtgactgccataaatgcaacattcatgaaggaagggagagtgtacttagtaaaggaattttcaaagaagtacattgcaccgcttgcacgatga
More
|
|||||||
| Protein seq | MFFIGQCIPPAIVQAYELKDAHHLKVYIELRKASNNMYMTAGWAQFIEATGLQVQEPAVFRVLSTSKMHFIIFAKDDAQFQTNPETLNRPDNRFAHQGKATTITSPIQCCIKGKLKHDGTSTSASNNRRTISEMCFCTKDIRLSAEVKNYIKDIAPFLQPSDKFYVTAINATFMKEGRVYLVKEFSKKYIAPLAR |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0019660 | OsLaMu_01g0019660.02 | Chr01 | 21457549 | 21461197 | + | IsoSeq | ||
| CDS seq | atgatggcacatccacttctgcaagtacacatggcaacaacaggcgcactatcagcgaaatgtgtttctgcaccaaggacatcaggttatcagctgaagtcaagaactacatcaaagatattgcgccattcctccagccctcagacaaatttt |
|||||||
| Protein seq | MMAHPLLQVHMATTGALSAKCVSAPRTSGYQLKSRTTSKILRHSSSPQTNF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 21460123 | 21460279 | + | OsLaMu_01g0019660.02 | OsLaMu_01g0019660.02,OsLaMu_01g0019660.01 | All |
| A5 | Chr01 | 21460359 | 21460449 | + | OsLaMu_01g0019660.02 | OsLaMu_01g0019660.02,OsLaMu_01g0019660.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.601680 | 12.470798 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0541000 | RBH | 4.642141 | 2.897840 | 3.125316 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g35930 | RBH | 1.183195 | 0.998598 | 0.932590 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0541000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020530 | RBH | 1.835649 | 4.583171 | 18.625303 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020140 | RBH | 1.600250 | 9.037033 | 17.338793 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020470 | RBH | 1.836420 | 1.150985 | 22.459005 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019850 | RBH | 0.441194 | 0.520115 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0019750 | RBH | 12.548853 | 33.266109 | 52.790546 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0338100 | RBH | 6.9005695 | 44.381212 | 35.4173785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021380 | SBH | 0.953485 | 0.769099 | 7.750226 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0013820 | SBH | 0.217419 | 0.162570 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013840 | SBH | 3.864647 | 6.072633 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019760 | RBH | 0.810785 | 1.389047 | 2.015940 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013960 | SBH | 0.795083 | 0.550388 | 3.837579 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
