Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsARC_01g0019850 OGI:01059280 | 16/16 ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) Chr01:20077814-20081315
Gene Symbol -
DNA seq

GTTTTAATCTGGCCAAACAACAATGGAAATGCATGCTAACGGGATGAATTACTATCAATGTATGTTCCCTCACCTCTATATCTCTTTTTCCTTTTCCCATTTCCCCCTTAATCATGTAACATTCTAACTTCTCATTTCTATCAACAAAATGGCTATAGGGTAGAGCTGCTCTACCTTCTTATGTTAAAAATAAAATCATTTTGAGTACCTCCAAAGGACACACGAAATAGTATCAAATTTATATTAACAAGAGAGTCACATGTCGTCACTATTTTCCCCTTTTGACCACTTCCACTTGTTCAATGATCCGTGAATGTGCATATACTATGCGTAGCTAAATAAACCCAACTAATGGAGGGTCAATTCATTTAGTTATCATGCAAGATTTTTAGTTTAACTATTTCAGATTTGCATAGGGTCTAGGGTTTAGGGACCTCATTAACAACCTCTCCCCTGCTGATTTGTTGCTTTGATTTTTTACTGAAAATTTGCCTAGCTGGTTTCAACAGAGTCCTCTTCTCCGGTCATCTCCTTTCTTCACGGCTGATCACAATCTAAAAAGGTGTCTTTCTGGTAGGGTTGCTACTGCTACTCCACTGGATCTGACATCTGGGAGGGGCGCACCAACCCTAAAAAAAGCTACAGCATTTCCTCTGATTTGTGTTTATATTGCTTGCTGTTTCTCCTCCAACCCCTTCGCTCTGCGATTTCCAACCACCACACGCCGGCCATCACCAAGTGCCCACATGTCAACCGAGTTCTCCAGCTTTACTGTTAGGTTCCTATGCACAAATCCATCCATATCCACTAGATAGAGCAAACAAATGTTTTGCCATATGAACCCTAGCCTAATATAAAGATCCCTTCTGATTACATTTTTGGGTTCTTGCAATTATCAGTTTTTTACGGCCTCACTCACTGCCAAATGATTTCTCCTGCCACAGGATTAGGGAATCCATGCACTGCAGTTGCCCGCGGTTTCTCATCACCAAACATATTTGCAGGTACAGTTTACTACCGTTGTCTTCTACGAATAACGGCACTGACAATAAAAAAAAAATACTATACTGATATGAACTGAAAACAATCTTGCTAAGTGTAAAATTATAAACCCAGAACAAACAAAATCAATTGTTATTTTATTTGCGCCTACAAAAGGATATGTTATATTAATACCTTTTCTTAGCAAATTTATTCTAGATCCCAGCCTTCGTCATGCACAAAGTTCTATACGATCTTTTTCCACTATCAATATCGTTTTACATATTGATTAAATTTCTCCTGGTACATCACCGTATATATTACCATATCCATATACATCGATTGTAACGCAGGCCTATTTAACATGTCTTATAAGTTAACACAAAAGACTATGGTGCCCATCATTACATAGTTTATAGCTAGCGATGCGAAAGTAATTAAGGCTAGAATAAATAAAATAATCTCAGAGGCGATTAGAGCAGTTGCTACCCCTCTACTGTGATCACTATTTTTAGACAAGCTCAAGTCCTCCAAACATGATCAGTATACCACACGGATCTTAAAATATCACAGCACAGTTTGCAACCTTTATAGCAAGGTCTTACCGACCAGTCCTCTAACCAATATATGATTTTGTTCCCACTCTGTGTAATTGTAATTTAAAGTTATTCCTTCTGTTAAACCTCATATCATAGAGATCATGCTTACTGTTTAAATACCTTCACAAAGAAACATATATCAGAAGTACCTAAAACCTTGCTATAGCAGCCATTGGCTCTTCTTCTTCATCGTCAGCCGCAGTGCATGCATCACTTAGCCTAATCTTCTTCACCTTTACTTATTATTGTATCCTTAGATTTCTCAGACGTTGCTTTATCTTCCCGTGCAAACACACACACACACACACACAAAACCCAACATAAATATGTATTCACAGATTCAATCTGCACCTTGTTTTGCATAGTTATGGATCCACCAACATTCTTCACGATCTGGATGACCGCGGCAAATCAGCACTGTGCGGTAAAATCTAAGACAAAACTATCCTATTCAATATATAAAGTATCCTATATACAACAATGTTAATGTATGTTCTTTATTGGCCAGTGTATTCCACCCGCAATTGTGCAAGCATATGAACTCAAGGACGGTCAAAAAAGTTGGTGACAGCACATCACCTTAAGGTCTACATTGAACTGAGGAAAGCATCTAACAACATGTACATGACAGCAGGATGGGCCCAGTTTATAGAAGCAACTGGTCTGCAGGTTCAAGAGCCCGCCGTTTTCAGGGTTTTATCAACCTCGAAGATGCATTTCATCATATTTGCAAAGGACGGTTATCTTAGATGCCCAGTTCCAGACAAACCCAGAGACTCTGAACCGACCAGACAATCGTTTCGCACATCAAGCCCACAAGGTAAATGAACCGTATCTTACAGCTCATCTCCTGGCAAAACAAAAAAAAAAAAAAAACATCCTGCTGTATACTGCCATATCTGCATCCATTAGCCTATCAACTTTATTACCTACTCTTGTCAATTTCTTTTTTTTTAAAACATTATTTCACTTGCAGGGAAAGCCACTACAATTACTTCGCCTATCCAATGCTGCATCAAAGGGAAGCTAAAACATGATGGCACATCCACTTCTGCAAGTACACATGGTTCACTTGATATTCTCAATATATTCATCACCATCTCTTTTCACCTACACTGCTATGTTCATTCACATCCCTTGTAACAGGCAACAACAGGCGCACTATCAGCGAAATGTGTTTCTGCACCAAGGACATCAGGTTATCAGCTGAAGTCAAGAACTACATCAAAGATATTGCGCCATTCCTCCAGCCCTCAGACAAATTTTATGTGACTGCCATAAATGCAACATTCATGAAGGAAGGGAGAGTGGTAAAATCACTAGCTCATTCCTCTTTTCTGCACTATACACTTAAAAACTAATGTTCTGTTTTTATCCAGTACTTAGTAAAGGAATTTTCAAAGAAGTACATTGCACCGCTTGCACGATGAAAAGACAGCACAAATCAAGGTACGAATTCCTGGACACCCCTCATCCACCATGGTTCTCCACAGATGCTACAACTTGAAATCGGGATGAACCCGTTTTGTGACAATCAACAACTTCCAGATTGGAACAATTTGCATATTCCACTTTTACAAGACAGATCGCCTGGAAGCAACGGCAGATGTCTTGTGAAGGCAATATGCATCGGCTACAACCTGTCATCCTCCTGTTATCGCCAAGTGACTCTGCCAGGGCTTTCTAAATATCTCCAGCCTGTTTCTATGTTTATTATTAGCGCCCTTTATAGCCTTTCTATAGACATCTAATTACCTTGTAAATATTGCACCCAAGCTAGCATGTGTGCCTCTCACTAGACACCAGGGTCGAACAACATCTCCAGTGCTGTAATCAGTTATTTTGGTCGTAGCTATATGCAATGGACAGCCTATGTGTATCTGTTCCATACCCTTTAATGCCCCGTCGGTCCTTCGTATTAT

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CDS seq

ATGGATCCACCAACATTCTTCACGATCTGGATGACCGCGGCAAATCAGCACTGTGCGTGTATTCCACCCGCAATTGTGCAAGCATATGAACTCAAGGACGGTCAAAAAAGATGGGCCCAGTTTATAGAAGCAACTGGTCTGCAGGTTCAAGAGCCCGCCGTTTTCAGGGTTTTATCAACCTCGAAGATGCATTTCATCATATTTGCAAAGGACGGTTATCTTAGATGCCCAGTTCCAGACAAACCCAGAGACTCTGAACCGACCAGACAATCGTTTCGCACATCAAGCCCACAAGGGAAAGCCACTACAATTACTTCGCCTATCCAATGCTGCATCAAAGGGAAGCTAAAACATGATGGCACATCCACTTCTGCAAGCAACAACAGGCGCACTATCAGCGAAATGTGTTTCTGCACCAAGGACATCAGGTTATCAGCTGAAGTCAAGAACTACATCAAAGATATTGCGCCATTCCTCCAGCCCTCAGACAAATTTTATGTGACTGCCATAAATGCAACATTCATGAAGGAAGGGAGAGTGTACTTAGTAAAGGAATTTTCAAAGAAGTACATTGCACCGCTTGCACGATGA

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Protein seq

MDPPTFFTIWMTAANQHCACIPPAIVQAYELKDGQKRWAQFIEATGLQVQEPAVFRVLSTSKMHFIIFAKDGYLRCPVPDKPRDSEPTRQSFRTSSPQGKATTITSPIQCCIKGKLKHDGTSTSASNNRRTISEMCFCTKDIRLSAEVKNYIKDIAPFLQPSDKFYVTAINATFMKEGRVYLVKEFSKKYIAPLAR

Function Putative B3 domain-containing protein LOC_Os07g12820 [UniProtKB/Swiss-Prot:Q84YL3]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsARC_01g0019850 OsARC_01g0019850.01 Chr01 20077814 20081315 + NAM
CDS seq

ATGGATCCACCAACATTCTTCACGATCTGGATGACCGCGGCAAATCAGCACTGTGCGTGTATTCCACCCGCAATTGTGCAAGCATATGAACTCAAGGACGGTCAAAAAAGATGGGCCCAGTTTATAGAAGCAACTGGTCTGCAGGTTCAAGAGCCCGCCGTTTTCAGGGTTTTATCAACCTCGAAGATGCATTTCATCATATTTGCAAAGGACGGTTATCTTAGATGCCCAGTTCCAGACAAACCCAGAGACTCTGAACCGACCAGACAATCGTTTCGCACATCAAGCCCACAAGGGAAAGCCACTACAATTACTTCGCCTATCCAATGCTGCATCAAAGGGAAGCTAAAACATGATGGCACATCCACTTCTGCAAGCAACAACAGGCGCACTATCAGCGAAATGTGTTTCTGCACCAAGGACATCAGGTTATCAGCTGAAGTCAAGAACTACATCAAAGATATTGCGCCATTCCTCCAGCCCTCAGACAAATTTTATGTGACTGCCATAAATGCAACATTCATGAAGGAAGGGAGAGTGTACTTAGTAAAGGAATTTTCAAAGAAGTACATTGCACCGCTTGCACGATGA

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Protein seq

MDPPTFFTIWMTAANQHCACIPPAIVQAYELKDGQKRWAQFIEATGLQVQEPAVFRVLSTSKMHFIIFAKDGYLRCPVPDKPRDSEPTRQSFRTSSPQGKATTITSPIQCCIKGKLKHDGTSTSASNNRRTISEMCFCTKDIRLSAEVKNYIKDIAPFLQPSDKFYVTAINATFMKEGRVYLVKEFSKKYIAPLAR

Gene Transcript Chromosome Start End Strand Source
OsARC_01g0019850 OsARC_01g0019850.02 Chr01 20077815 20081315 + NAM
CDS seq

ATGTACATGACAGCAGGATGGGCCCAGTTTATAGAAGCAACTGGTCTGCAGGTTCAAGAGCCCGCCGTTTTCAGGGTTTTATCAACCTCGAAGATGCATTTCATCATATTTGCAAAGGACGGTTATCTTAGATGCCCAGTTCCAGACAAACCCAGAGACTCTGAACCGACCAGACAATCGTTTCGCACATCAAGCCCACAAGGGAAAGCCACTACAATTACTTCGCCTATCCAATGCTGCATCAAAGGGAAGCTAAAACATGATGGCACATCCACTTCTGCAAGCAACAACAGGCGCACTATCAGCGAAATGTGTTTCTGCACCAAGGACATCAGGTTATCAGCTGAAGTCAAGAACTACATCAAAGATATTGCGCCATTCCTCCAGCCCTCAGACAAATTTTATGTGACTGCCATAAATGCAACATTCATGAAGGAAGGGAGAGTGTACTTAGTAAAGGAATTTTCAAAGAAGTACATTGCACCGCTTGCACGATGA

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Protein seq

MYMTAGWAQFIEATGLQVQEPAVFRVLSTSKMHFIIFAKDGYLRCPVPDKPRDSEPTRQSFRTSSPQGKATTITSPIQCCIKGKLKHDGTSTSASNNRRTISEMCFCTKDIRLSAEVKNYIKDIAPFLQPSDKFYVTAINATFMKEGRVYLVKEFSKKYIAPLAR

OsARC_01g0019850.02OsARC_01g0019850.01AS20078000 bp20079000 bp20080000 bp20081000 bp20082000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr01 20079902 20080213 + OsARC_01g0019850.02 OsARC_01g0019850.02,OsARC_01g0019850.01 All
RI Chr01 20080773 20081315 + OsARC_01g0019850.02 OsARC_01g0019850.02,OsARC_01g0019850.01 All

Expression

Leaf Root Panicle
FPKM 0.441194 0.520115 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0541000 RBH 4.642141 2.897840 3.125316
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g35930 RBH 1.183195 0.998598 0.932590
Nipponbare | IRGSP 1.0 | RAP-db Os01g0541000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0020530 RBH 1.835649 4.583171 18.625303
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0020140 RBH 1.600250 9.037033 17.338793
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0020470 RBH 1.836420 1.150985 22.459005
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0019750 RBH 12.548853 33.266109 52.790546
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0338100 RBH 6.9005695 44.381212 35.4173785
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0021380 SBH 0.953485 0.769099 7.750226
Zhenshan 97 | ZS97RS3 | HZAU NA NA NA NA NA
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0013820 SBH 0.217419 0.162570 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0013840 SBH 3.864647 6.072633 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0019760 RBH 0.810785 1.389047 2.015940
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0019660 RBH 0.601680 12.470798 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G013960 SBH 0.795083 0.550388 3.837579
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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