Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsIR64_01g0021380		OGI:01068910 \| 16/16			IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)			Chr01:23304414-23312087		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		ATGTCACGAGGGGGAGGCGGAGGCGGCGGCGCTCGATGGCGGCGTGGGAGAGGCTGGCGGCGGCTAGGGTTTGAGGGGGCGGCGGTGGCAGCGCGAGTGGTAGCGGCGGCGCGAGTGGGCGGTGGTGGCGCGAGGCGATGGGGACGGAGCGAGGGGGAGGCGAAGGCGGTGCTTCGTGGTGGCACACATCGGCGGTGGCTTAGGCAGACGACATCCATATGGCAGGGGCTACTGGCCTCGCCGCCCTCGTCGCCATCCTCAGCCTGCCGTCGACTTCACCGCCGTCTTCAACTTGCTGGTCTACCCGCTCGCTGCCATCGGAGTGGCCGGATCTGATGGCCATGACCTCAAGGCCGCCGGATCCGATGCCATCTCGTCTTCCTCCTCGAAAACCCAGGCCCCCTTCTCTTCGTCTACTCGCTTTCCCACCGTCTCCAAGTCCAATCTAATGGCTTCCTCTCTTCTCTGCGCCTCGCCGCTCTCCTTCCTCTCCCGCCTAAAGCCGCTCAACCCTAGGCTGCCCGCCTCGCACCTCCTCCGCCTCCTTCTGCTCTCCACCACCACCTCCACCACGTAGGCCTCGTGCTCACCGTCTCCGCTCCGAACCCTAGCGGCCACCAACACCGTGACCCCGCGGCCGAGGCGAAGCTCGAGAGGCTGCAGCCGCTGCAGTGGCCTACGAGGGACGAGCTGTGTGACGAGCTCGGCGCCGGTGATGCCGGCCGCTGCGTGCGCCTCTGCGGCTGGGTCGCTCTCCACCGCGCCCACGCCGGCCTCACCTTCCTCATTCTGCGACCACTCTGGCATGGTCTTGGTGAGTGGTTGTTATTGTTAGTGGTGTTAGTGATAGACTGATGCTGATAATTTACGATTGTGTTTGTTGCCCATGTGGTAACTGCGAGCCTGTGATTGCAATTGTTGCACGCAGGTGTATTGTTGTTTGATCGTTCTCGTTAGTGATTAGTCATACTAATCTACATGCTAATGCTCTAGATATTACTACTTTATAACAGTTGGTGGTTCCACATTTTTACTGCATGTTTCATTGCTCAGTATGTATCATCGAGAATGGTCAGTTGTATTGTCAGGTTAATGACGTGATAGTATTTGTAGCACTGACATTACCTACTGTTTTCCTGTTGTATTGAGTGGTTTTGGCAATGTTTGCAGGTACGGATTCCCAATAAACTGATGTTCGGTGATCTAATAAGTGAAGGCAAAATGAAGTAATATAATCGCATCAATTTGTAATGTTGTGGGGAGTTGATTTTTGTTTTTGTTTTTCTGTACTGATGAGGTGTAGGCTAGCAGCGCCCGCCAACCAGCACTGAGGTAAGGAGTTCCACAACCACAGCACTCAGATGCAAATAATGGGCATGCCTCTGTCTAAGCTGCTAAGTAGAGAAGCACACTGCAAATAAGAGCTGAGTGAGCTAGGACCTGCCAATCTCTGTTTTCTCTTGTTCTTGGATTGCAATTTTTGATTTTAGATTGGATATTTGAGAGAATGCATAGGAAAGGGAAAGGAAAAGGGAAAGGGAAGCCTTTACATTATACTTATCTTTCCTTACGTTACCCATCTCAGATGTGGTCATAGTAATATACTTTTTCCTTTGTGCCACTTATCTTTCCTTTCTATGCTCCACTGATATATCAGCTGGTCCATGTGCCATTTGGTGATTGCTGCTTACATAGTTGTTTTTATTTATCTCCGTACGCTATGTGATGTTATATTCCCTTCTCGATATATGTTCAGCCATTCAATCAGTTTTGATTAGTTAATGTTCATGCATCAGATTTGTTAATACAAAATGTTCTCTGATCTGGTATTCAGCTTGGCTACCAGTACATGTTACAAGTTCAATCTTCCACAAGCAATTGAGAAAGGTTGCAGGTGAGAGGCAAGCAGAAGCATGACAGGAATATTGATTTACTTACATGATAACCGTTGTGCCATTAGGTACTAATACTAACACCATTATTTTAAATCATGCCCCTTCTATAGCTTGCTTCTTTGGCTGCATGTACTATAGCTGATTCTTTGCTGTTATATGATATTTTGAACTTCCTACAGATGTTGTATATGCTATTTAATTTTCATTTTTTGTTTTCATGCTCTGCAGTTTCATCTGCATGTAACCTAAATAATTTCACGGTGCTCAACTGGATCACTGCGGGTGTAGTTTCATTGCTCATTTCCCATGTGAGTATTAATTTATTGGCAATCCTAATTGTAGCTGCCATTTGATCTCCTTTGTGATGTTTTACCTGTCCAAATTTTTATCCCAACGGGCATCCTTGAGGTATATCTGTGTTTATGTTATAGGTGCGCTGATGCTTGGTTTTGCTTCATTTAATGGCTTAGCTTGATTAACCTGAAAATGTGAATTGTGCTCTTAGGGGTTTTTATACCATATAATGTAATCTCTTTATCTTTTTCAGCCTTGGACAATCGGAGGTCATTGAGATTAAACTCTGCTTGCTTCGCATCCTCCAGTAAGTGTAAGACTTAAAAAAAAATCCATGGGTATTTTTTTCACTTCCCAGTCGTAACATACATGTCATAATGTTAAGCACTAATTGATTTAGTTATAAACTATGTTTGTGATTACACTAGCTGGTCCCATTAATCAATGGAAAATATTCTTTTTTTCGCACATAGACAAGTTATATTTCCAAGTAAATTTCTTCATTCAAAAATCACTTATTTTGGTATCAATGGCTAGCGTAACCAACTCAGATGATCTTCTTGTTGATAAAATGCAGTATGTTCATCATGGATGGTGACTTTGCTCCATTGCTTGAGCTTATCAAGTTACACAGAATGTATGGGCTTTTGTTGGTCTTGGACGTTGTTAGTGTTTCTCTCCCTTGAAATACATATTTTTTTCCTGACTATTGGTAATCAAGTAATGTTGTAATTTTCCTTTTCAAGGCACACAGTTCTCACTTGTTTGTGGTGGTGATGGTGGTGGTTTTTAACATATAATGTGATATCTTTTCTTTTTCAGCCTTGGACAGTTGGAGATCATTGCGATGTTGGTGTAATTGGGCTTACTAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTGTTAGTATCAATTCAGAGAGACAATTTGCGTACATCCCTTGGATTTCATGATATGGGTAAATTTTCCACTCAATTCTACTCTTACTTCTAGCCGCTGTATTATGTTTTCAGTTTGGCCATAACATAACCGAGGTTTCAGTTAATATGTAATTTGTGGTGTATTACTTGCTACCTACAGTCCCATTACATTGATGTTTTCTTACCGCCTATGCTCAGACTACAATCATTGGCAGTCCAAGCAGCCTGCTTCTTGCCTCTTTTAATAAGATTACACATATATACATGGATTAATTGTGTGATTCTTCTCAAAATGCACTTGAAATCTGAAGGTGTATTCTACATAGTTTGTGTATATGGATTTATTCACTAATTCTTCTGCAAGCAGACAATCTTGGTTTGCAGCCCCAAGTAAAGGGCAAGTGTACGAATTTAGCCACAAAAGCGACGCCAACGAGGAACGCCATCGACGGTGACCGCTGCTCCATCGATCCTTCTTCCCCCGCTTGCTACTCTCACTTCGCAGGGTTTAGAGATCTCATCTCCAAACCACATGCCTTTACTATCACCACACTATTTTGCTCTCTTTCTATTCTTTTCATTCCCCATTTTCTCTATACCGAATATATGTTTTTAGATCATCGAGCGTCACACCCTTCCTCAAGTCAATCAAACTATCTTTTTGAAACAGTAGACGGTAGGAGATCTACCGGATATATTAGAAGAAGAGAGTTGACCCTGTTTATAAGGGAAACCGGGCCAGAAAACCATACAACTGCACGGTTTGCTAAGGGAAAACCGGCAAAACCTTACACAGAAGACACAAAAAAAACCCGTGACAAAACTATGAACCACAGAAGTAACCGAGAGAGGAGCAAGACCTTCAAGACGAAGCCTCCAAGGAGGTGAACAACGACAGAAGCCGCTGCCGACGCCCGCCCATAACTGGACTGGGTTTTCACCCAAAGGGAGAAAGAGTCCACAAGACAACACCTCCAAGGAGGAAACGGCACCCGCAGGCGTCGATGTCGCCGATCCTGGAAGACCAGACAGGGCTTTCGCCTAGGACTCCCTCAAAAGGTGTAGGACCTCCAAGAAGCCAAAGCAAAAGTGTTAAGAGTTGTCGTTGCCTAGCTCATCGGCTGACCCGATGCAGCAGCTTCGACTCCGCCTTAACACAAAAGCTCAGCACCGAAGAGGAAAAACACACCGCTCCAAACTCGGCACTAAGATAGGTCCACATAGTCACAGGGCACATGAAGCACTGGCGAGGCATAAGAGCCCTGACTTCAGACGGACTGGACCACCTTCAAGGACGAACACTTCTCCTCAACCACCGAAAGACTCCACGGCCAGGTCTGGAAGACGGCCAACAGAAGGGAGAAGCATCACGGAGGGGAGGAGACCTGGCCGGCCTGAAGAGGAGCTGAGAGTTGGAGTCAGGGGAACCTAGGACCTCGGTGTCAACCATGTCTCCGGCGAGGAACTCCTGGTTTCGCGGGACAAAACCTCACGACTACGGCAACCACCTCCAAGATACCACCAGCGCAGAGAGAGGAGCGCTGGGGCGAGCAGCAGAGCAACTGGACAACTGGCAGCAGAGATCAACTGGTAGCAGCGATGGCGAGAGGAAGGGAGGAAGGAAACCTCCACTTCTGCTTCGCTTGTGCCGACGGCACAGAGAGGAGAGGGACATCACAAGAGAGAATAAGGGAATGAGGGGAGGGGGGGAAGAAGAGGGTGGTTGTGGAGAGGGAGGAGGAAGAGAGTAGTGGCGGGATGGAGACCCCGGCCAGCCCCGACCTTGCCGACCACCGGAGACGGTGGCCACCGTCAGCGCCGGCCTTCGACCACCGGAGCCAGCGGCCGCCGCCAGCACCGACTCCGCCCACGCGCCGCTGCGCGAGCCGTCGCCGCCCACGCGTCGCAGCAGCCTCCTCCACCGCCGAAAATCGGAGGGCTTGCCAGATCTGGCGACGGCGACGCCAGATCTGCCGCCGCCTAGCCGGGAGACCTCGCCGCCACCTCTCACTGGCGTACCGACGCCGGCGAACACCACCTCCATCACGCCGAAGAGGGAGCGCCGCCGCGGAGAAGGCCCCGCCGCCGCCATCCTAGCTCACCAGCCGGCTTTGCCGGCGGTGAGCTCCGGCGGCTGCGAGGTAGGGGGAGGGGGGAGAGGGGGGCGGCGGCGGCGGCGGTAGGGTTCACCCCCGTGTCGCCTGCGCGTGGGCGACGCGGGGGGATAAAATTTCCTGTCTTTTTCTATGTCAATCAAACTATCATAGATCTACCATTAACCCTAAGTACTGTTGACAGCCCTAATCAGTGATTATGCTTAAGTGATCTAACCTACAAACCCTCTTTGATATTAGCTGACCCAGAAAAACCTTTCTATAACCATTTTATCATAGGGGTAGACTAATTGATTGTATCATTTAACTATGTAGATTTGGCATCCTAAATATACACCTATTCTATTACATATTCTCTCACTAATCCTTATTTCAGTTCAGATATAAATGTTATACTTTTTAGCTTGCCCATTATTGAAACATGTATACTCGTACTTTAGCCCCTTTCAATTCTTTATATTTTATATTTGTGTCATGACTTGCTAATATCGGATTCAGTTCCTAATATTTCTAATATAAAAATTTCCCTTTTTCAATACATTAGAACAATACCATTACACGAAATTACAATAAATAATTAATACTCTTTTCACATAAATCCTTTAGCTACTATACTGAAAAAAATACTTACATCAACTGTAAATTATTAAGCTTTTTCACAGCTATTTAGTCCTATTCTTGCATCATAATTATCTTATATCTTACCGTAGTATAGCCACTTAACCCAGCACATTATCTTCTTACCATATATATCTTTCCAGCTACAACTAAGATTTACATCACATAAATACTTACATACATCAAGTTATAGATCACATACTTCATTGCATTTCTACATATCCCAAAATACTCACCCTGTTTGAAAATAAAAAAATTATAATAAAAACTCTAATAACTAGCTGAGCCTCTCATAACTTTTTTTATTTATCAAATACATCTAACTACATGTGTATATATATTGTAGCCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGGTAAGCTCAAAGTCAAACAAAACTTTCTATGTACAATATGCTGTTAGCACCAGTGCGGATATGATATTTTCTTTCTACATCCTGTGCCAATCACACTTGCGACAGCATATAAGATGCAGCGTGGAGATAATCTGAAGTTAAAAACTTCCCATGGCTTGAAGATAAAGATCAAAATCAAGGAAGTAGCTAGCACACTGTACATGACGACATGATGGAAATAATTTGTAGAGGCAACTGGATTAGAAACTGGAGAAACGATTCTTTTCTGGATGCCATCACAGTCTAAAGCGTGTGTTATGATACTGAACAGACAAGGCCTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCGAACAAAAGGCCCCTTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTCCTAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGGTACAAAGTTTGCCTCATCACATTTTTTCAACTTACACTACCCATTAACATGTCTATTCTGTTTTCGCTGGGTAATAGAAGATATACAATTAAATCAGCCAGATACTCCAACTTACATTGGCTAAAAAACACTGTGCTATATTGCCTCCTGCAAAATTGCACATGCTGGACAAGTGATTTAAATCTTTCTATCTTATGTTTTCTATTCATATGTAATCATTTTCTGTCATTTTTTACTAGCAGGCAGTAACAAAAGAAAACCTAGCAGACACCTCCTTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGATTGCAGATTTTCTAGAAGAATCAAACAAGTTCTATGTCGTGCGTATGAACAGAACATTCATGGAACAGGACAGAGTGGTAATTTTTGACACAACATTTCCATCTTCTTATACCCATACTGAGCATATAAATGTCAAGCATATAAATGTCACTTTTCTTTTTCAGTACTTTGCGACCGAGTTTTCAAAGAAATACATTGTGAACTTGGTTCGAGGCAAGACAGCAAACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAACATCAGGGTGGTTAGCTTTGCAGCAGCCAACAGCATCAACTTACACAATCTGCATCTTCCACTTTTTAGGACAAGTCACCTCACGCTCACCATAGATGCTCTGTGAAAGTTACCTGCATCTTCAGTAGTCGCTGCTATTATCTACACTGGAACAACTACTATAATTCTCTATTATCCTTTGCTTGCGGTCTATCTAACTTCACTTGCTCTGTAAGCACGTGACCTATAACTGCTTATCATTGTCCTCAGCTCCTTTTGTTATCCATAAGCTGAGTGAACAATTAACCACTTTATGTACAAACAGCTGGCTTGTTATACTACAGCTACTATGGTACTATTTGTTGTTTCTTT More
CDS seq		ATGTCACGAGGGGGAGGCGGAGGCGGCGGCGCTCGATGGCGGCGTGGGAGAGGCTGGCGGCGGCTAGGGTTTGAGGGGGCGGCGGTGGCAGCGCGAGTGGTAGCGGCGGCGCGAGTGGGCGGTGGTGGCGCGAGGCGATGGGGACGGAGCGAGGGGGAGGCGAAGGCGGCTAGCAGCGCCCGCCAACCAGCACTGAGCCTTGGACAATCGGAGGTCATTGAGATTAAACTCTGCTTGCTTCGCATCCTCCATATGTTCATCATGGATGGTGACTTTGCTCCATTGCTTGAGCTTATCAAGTTACACAGAATGTATGGGCTTTTGTTGGTCTTGGACGTTCCTTGGACAGTTGGAGATCATTGCGATGTTGGTGTAATTGGGCTTACTAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTGTTAGTATCAATTCAGAGAGACAATTTGCGTACATCCCTTGGATTTCATGATATGGACAATCTTGGTTTGCAGCCCCAAGTAAAGGGCAAGTGTACGAATTTAGCCACAAAAGCGACGCCAACGAGGAACGCCATCGACGGTGACCGCTGCTCCATCGATCCTTCTTCCCCCGCTTGCTACTCTCACTTCGCAGGCCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGAGGCAACTGGATTAGAAACTGGAGAAACGATTCTTTTCTGGATGCCATCACAGTCTAAAGCGTGTGTTATGATACTGAACAGACAAGGCCTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCGAACAAAAGGCCCCTTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTCCTAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGTAACAAAAGAAAACCTAGCAGACACCTCCTTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGATTGCAGATTTTCTAGAAGAATCAAACAAGTTCTATGTCGTGCGTATGAACAGAACATTCATGGAACAGGACAGAGTGTACTTTGCGACCGAGTTTTCAAAGAAATACATTGTGAACTTGGTTCGAGGCAAGACAGCAAACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAA More
Protein seq		MSRGGGGGGGARWRRGRGWRRLGFEGAAVAARVVAAARVGGGGARRWGRSEGEAKAASSARQPALSLGQSEVIEIKLCLLRILHMFIMDGDFAPLLELIKLHRMYGLLLVLDVPWTVGDHCDVGVIGLTKCSGTHGLLPCFDTFLLVSIQRDNLRTSLGFHDMDNLGLQPQVKGKCTNLATKATPTRNAIDGDRCSIDPSSPACYSHFAGHNHVFRSFRINEAECNKSKLLEATGLETGETILFWMPSQSKACVMILNRQGLIRCPVKTPSNSSSANKRPLDPSGQLTRASTFDHASPSKSVPFLRNGTVTKENLADTSFCHQIKLTAELKSYIKEIADFLEESNKFYVVRMNRTFMEQDRVYFATEFSKKYIVNLVRGKTANIRVQIAGRPSTT
Function		Putative B3 domain-containing protein Os10g0158600 [UniProtKB/Swiss-Prot:Q7XGM6]

Transcripts

sorry

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsIR64_01g0021380	OsIR64_01g0021380.04	Chr01	23304831	23312072	+	NAM
CDS seq	ATGCCATCACAGTCTAAAGCGTGTGTTATGATACTGAACAGACAAGGCCTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCGAACAAAAGGCCCCTTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTCCTAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGTAACAAAAGAAAACCTAGCAGACACCTCCTTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGATTGCAGATTTTCTAGAAGAATCAAACAAGTTCTATGTCGTGCGTATGAACAGAACATTCATGGAACAGGACAGAGTGTACTTTGCGACCGAGTTTTCAAAGAAATACATTGTGAACTTGGTTCGAGGCAAGACAGCAAACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAA More
Protein seq	MPSQSKACVMILNRQGLIRCPVKTPSNSSSANKRPLDPSGQLTRASTFDHASPSKSVPFLRNGTVTKENLADTSFCHQIKLTAELKSYIKEIADFLEESNKFYVVRMNRTFMEQDRVYFATEFSKKYIVNLVRGKTANIRVQIAGRPSTT

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsIR64_01g0021380	OsIR64_01g0021380.02	Chr01	23304414	23312072	+	NAM
CDS seq	ATGTCACGAGGGGGAGGCGGAGGCGGCGGCGCTCGATGGCGGCGTGGGAGAGGCTGGCGGCGGCTAGGGTTTGAGGGGGCGGCGGTGGCAGCGCGAGTGGTAGCGGCGGCGCGAGTGGGCGGTGGTGGCGCGAGGCGATGGGGACGGAGCGAGGGGGAGGCGAAGGCGGCTAGCAGCGCCCGCCAACCAGCACTGAGCCTTGGACAATCGGAGGTCATTGAGATTAAACTCTGCTTGCTTCGCATCCTCCATATGTTCATCATGGATGGTGACTTTGCTCCATTGCTTGAGCTTATCAAGTTACACAGAATGTATGGGCTTTTGTTGGTCTTGGACGTTCCTTGGACAGTTGGAGATCATTGCGATGTTGGTGTAATTGGGCTTACTAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTGTTAGTATCAATTCAGAGAGACAATTTGCGTACATCCCTTGGATTTCATGATATGGACAATCTTGGTTTGCAGCCCCAAGTAAAGGGCAAGTGTACGAATTTAGCCACAAAAGCGACGCCAACGAGGAACGCCATCGACGGTGACCGCTGCTCCATCGATCCTTCTTCCCCCGCTTGCTACTCTCACTTCGCAGGCCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGCATATAAGATGCAGCGTGGAGATAATCTGAAGTTAAAAACTTCCCATGGCTTGAAGATAAAGATCAAAATCAAGGAAGTAGCTAGCACACTGTACATGACGACATGA More
Protein seq	MSRGGGGGGGARWRRGRGWRRLGFEGAAVAARVVAAARVGGGGARRWGRSEGEAKAASSARQPALSLGQSEVIEIKLCLLRILHMFIMDGDFAPLLELIKLHRMYGLLLVLDVPWTVGDHCDVGVIGLTKCSGTHGLLPCFDTFLLVSIQRDNLRTSLGFHDMDNLGLQPQVKGKCTNLATKATPTRNAIDGDRCSIDPSSPACYSHFAGHNHVFRSFRINEAECNKSKLLAYKMQRGDNLKLKTSHGLKIKIKIKEVASTLYMTT More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsIR64_01g0021380	OsIR64_01g0021380.03	Chr01	23304414	23312072	+	NAM
CDS seq	ATGTCACGAGGGGGAGGCGGAGGCGGCGGCGCTCGATGGCGGCGTGGGAGAGGCTGGCGGCGGCTAGGGTTTGAGGGGGCGGCGGTGGCAGCGCGAGTGGTAGCGGCGGCGCGAGTGGGCGGTGGTGGCGCGAGGCGATGGGGACGGAGCGAGGGGGAGGCGAAGGCGGCTAGCAGCGCCCGCCAACCAGCACTGAGCCTTGGACAATCGGAGGTCATTGAGATTAAACTCTGCTTGCTTCGCATCCTCCATATGTTCATCATGGATGGTGACTTTGCTCCATTGCTTGAGCTTATCAAGTTACACAGAATGTATGGGCTTTTGTTGGTCTTGGACGTTCCTTGGACAGTTGGAGATCATTGCGATGTTGGTGTAATTGGGCTTACTAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTCCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGCATATAAGATGCAGCGTGGAGATAATCTGAAGTTAAAAACTTCCCATGGCTTGAAGATAAAGATCAAAATCAAGGAAGTAGCTAGCACACTGTACATGACGACATGA More
Protein seq	MSRGGGGGGGARWRRGRGWRRLGFEGAAVAARVVAAARVGGGGARRWGRSEGEAKAASSARQPALSLGQSEVIEIKLCLLRILHMFIMDGDFAPLLELIKLHRMYGLLLVLDVPWTVGDHCDVGVIGLTKCSGTHGLLPCFDTFFHNHVFRSFRINEAECNKSKLLAYKMQRGDNLKLKTSHGLKIKIKIKEVASTLYMTT More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsIR64_01g0021380	OsIR64_01g0021380.01	Chr01	23304414	23312072	+	NAM
CDS seq	ATGTCACGAGGGGGAGGCGGAGGCGGCGGCGCTCGATGGCGGCGTGGGAGAGGCTGGCGGCGGCTAGGGTTTGAGGGGGCGGCGGTGGCAGCGCGAGTGGTAGCGGCGGCGCGAGTGGGCGGTGGTGGCGCGAGGCGATGGGGACGGAGCGAGGGGGAGGCGAAGGCGGCTAGCAGCGCCCGCCAACCAGCACTGAGCCTTGGACAATCGGAGGTCATTGAGATTAAACTCTGCTTGCTTCGCATCCTCCATATGTTCATCATGGATGGTGACTTTGCTCCATTGCTTGAGCTTATCAAGTTACACAGAATGTATGGGCTTTTGTTGGTCTTGGACGTTCCTTGGACAGTTGGAGATCATTGCGATGTTGGTGTAATTGGGCTTACTAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTGTTAGTATCAATTCAGAGAGACAATTTGCGTACATCCCTTGGATTTCATGATATGGACAATCTTGGTTTGCAGCCCCAAGTAAAGGGCAAGTGTACGAATTTAGCCACAAAAGCGACGCCAACGAGGAACGCCATCGACGGTGACCGCTGCTCCATCGATCCTTCTTCCCCCGCTTGCTACTCTCACTTCGCAGGCCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGAGGCAACTGGATTAGAAACTGGAGAAACGATTCTTTTCTGGATGCCATCACAGTCTAAAGCGTGTGTTATGATACTGAACAGACAAGGCCTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCGAACAAAAGGCCCCTTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTCCTAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGTAACAAAAGAAAACCTAGCAGACACCTCCTTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGATTGCAGATTTTCTAGAAGAATCAAACAAGTTCTATGTCGTGCGTATGAACAGAACATTCATGGAACAGGACAGAGTGTACTTTGCGACCGAGTTTTCAAAGAAATACATTGTGAACTTGGTTCGAGGCAAGACAGCAAACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAA More
Protein seq	MSRGGGGGGGARWRRGRGWRRLGFEGAAVAARVVAAARVGGGGARRWGRSEGEAKAASSARQPALSLGQSEVIEIKLCLLRILHMFIMDGDFAPLLELIKLHRMYGLLLVLDVPWTVGDHCDVGVIGLTKCSGTHGLLPCFDTFLLVSIQRDNLRTSLGFHDMDNLGLQPQVKGKCTNLATKATPTRNAIDGDRCSIDPSSPACYSHFAGHNHVFRSFRINEAECNKSKLLEATGLETGETILFWMPSQSKACVMILNRQGLIRCPVKTPSNSSSANKRPLDPSGQLTRASTFDHASPSKSVPFLRNGTVTKENLADTSFCHQIKLTAELKSYIKEIADFLEESNKFYVVRMNRTFMEQDRVYFATEFSKKYIVNLVRGKTANIRVQIAGRPSTT More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsIR64_01g0021380	OsIR64_01g0021380.05	Chr01	23307242	23312087	+	IsoSeq
CDS seq	ATGGCCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGCATATAAGATGCAGCGTGGAGATA
Protein seq	MATIMSSAVFASMRLNATNQSYLHIRCSVEI

Event Type	Chromosome	Start	End	Strand	Alternative mRNAs	Total mRNAs	Source
A3	Chr01	23310680	23310909	+	OsIR64_01g0021380.02,OsIR64_01g0021380.03,OsIR64_01g0021380.04,OsIR64_01g0021380.05	OsIR64_01g0021380.04,OsIR64_01g0021380.02,OsIR64_01g0021380.01,OsIR64_01g0021380.03,OsIR64_01g0021380.05	All
A3	Chr01	23311142	23311390	+	OsIR64_01g0021380.02,OsIR64_01g0021380.03,OsIR64_01g0021380.05	OsIR64_01g0021380.04,OsIR64_01g0021380.02,OsIR64_01g0021380.01,OsIR64_01g0021380.03,OsIR64_01g0021380.05	All
SE	Chr01	23307575	23310616	+	OsIR64_01g0021380.01,OsIR64_01g0021380.02	OsIR64_01g0021380.04,OsIR64_01g0021380.02,OsIR64_01g0021380.01,OsIR64_01g0021380.05	All
A5	Chr01	23307519	23310616	+	OsIR64_01g0021380.04,OsIR64_01g0021380.05	OsIR64_01g0021380.04,OsIR64_01g0021380.03,OsIR64_01g0021380.05	All

Expression

	Leaf	Root	Panicle
FPKM	0.953485	0.769099	7.750226

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_01g0571700	RBH	0.673650	1.116143	2.639069
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os01g39060	RBH	0.418620	0.705263	0.543733
Nipponbare \| IRGSP 1.0 \| RAP-db	Os01g0571700	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_01g0022270	RBH	0.593444	1.881773	4.666736
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_01g0021900	RBH	0.457867	1.107903	3.728729
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_01g0022210	RBH	0.587772	4.019462	6.197453
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_01g0021590	RBH	0.012522	0.244709	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_01g0021400	RBH	15.366286	36.980900	74.839996
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_01G0371900	RBH	10.256493	53.2645395	56.420504
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_01G0358800	RBH	10.7300365	80.7538265	51.3736475
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_01g0021350	RBH	0.632485	0.665053	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_01g0021260	RBH	1.383924	19.148361	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_01g0021510	RBH	5.164667	6.469573	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_01g0021590	RBH	2.930151	4.576266	5.654565
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_01g0021330	RBH	0.216925	0.678255	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_01G021650	RBH	2.101015	19.576838	10.429717
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_01g0021360	RBH	1.400896	1.026720	5.190004

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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