Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0021330 | OGI:01068910 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:23265076-23272408 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcgctttcccaccgtctccAagtccaatctaatggcttcctctcttctctgcgcctcgccgctctccttcctctcccgcctaaagccgctcaaccctaggctgcccgcctcgcacctcctccgcctccTtctgctctccaccaccacctccaccacgtaggcctcgtgctcaccgtctccgctccgaaCcctagcggccaCcaacaccgtgaCcccgcggccgaggcgaagctcgagaggctgcagccgctgcagtggcctacgagggacgagctgtgtgacgagctcggcgccggtgatgccggccgctgcgtgcgcctctgcggctgggtcgctctccaccgcgcccacgccggcctcaccttcctcattctgcgaccactctggcatggtcttggtgagtggttgttaTtgttagtggtgTtagtgatagactgatgctgataatttacgattgtgtttgttgcccatgtggtaactgcgagcctgtgattgcaattgttgcacgcaggtgtattgttgtttgatcgttctcgttagtgattagtcatactaatctacatgctaatgctctagatattactactttataacagttggtggttccacatttttactgcatgTttcattgctcagtatgtatcatcgAgaaTggtcAgttgtattgtcaggttaatgacgtgatagtatttgtagcactgacattacctactgttttccTgttgtattgagtggttttggcaaggtttgcaggtacggattcccataaaactgatgttcggtgatctaataagtgaaggcaaaatgaagtatataatcgcatcaatttgtaagttgtggggagttgatttgttttgtttttctgtactgatgaggtgtaggctagcagcgccgcgcaaccggcactgagtaggagttccacaaccacagcactcagatgcaaataatgggcatgcctctgtctaagctgctaagtagagaagcacactgcaaaaagagctgagtgagctaggacctgccaatctctgttttctcttgttcttggattgcaatttttgatttatatgatgatggatttgagggggatgcataggaaagggaaaggaaagggaaagggatgcctttacattatacttatctttccttacgttaccatctcagatgtggtcatagtaatatactttttcctttgtgccacttatctttccttctatgctccactgatatatcagctggtccatgtgccatttggtgattgctgcttacatagttgtttttatttatctccgtacgctatgtgagttatatccctttctcgatatagttcagccattcaatcagttttgattagttaatgttcagcctcagatttgttaatacaaaatgttctctgatctggtattcagcttggctaccagtacatgtacaagttcaatcctccacaagcaattgagaaaggtgcaggtgagaggcaagcagaagcatgacaggaatattgatttacttatgataaccgttgtgccattaggtactaatactaacaccattattttaaatcatgcccttctatagcttgctcttttggctgcatgtactagctgattctttgctgttatatgatattttgaacttcctacagatgttgtatatgctatttaattttcattttttgttttcatgctctgcagtttcatctgcatgtaacctaaataatttcacggtgctcaactggatcactgcgggtgtagtttcattgctcatttcccatgtgagtattaatttattggcaatcctaattgtagctgccatttgatctcctttgtgatgttttacccgtccaaatttttatcccacgggcatccttgaggatatctgtgtttatgttataggtgcgcgctgatgcttggttttgcttcatttaatggcttagcttgattaacctgaaaatgtgaattgtgctcttaggggtttttataccatataatgtaatctcttatcttttcagcttggacaatcgaggtcattgagattaaactctgcttgcttcgcatcctccagtaagtgtaagacttaaaaaaaaatccatgggtatttttttcacttcccagtcgtaactacattgtcataatgtaagcactaattgatttagttataaactatgtttgtgattacaatagcaggtcccattaatcaatggaaatattctttttttcgcacatagacaagttatatttccaagtaaatttcttcattcaaaaatcacttattttggtatcaatggctagcgtaaccaactcagatgatcttcttgttgataaaatgcagtatgttcagcatggatggtgactttgctccattgcttgagctatcaagttacacagaatgtaatcacttattttggtatcaatggctagcgtaaccaactcagatgatcttcttgttgataaaatgcagtatgttcagcatggatggtgactttgctccattgcttgagcttatcaagttacacagaatgtatgggcttttgttggtcatggacgttgttatggttctctcccttgaaatacatatttttttcctgactattggtaatcaagtaatgtggtaattttccttttcaaggcacacagttctcacttgttttgtggtggtgatggtggtggttttaacatataatgtgatatctttctttttcagccttggacagtttgagatcattgcgatgttggtgtaattgggcttactaagtgctctggtactcatgggcttcttccctgttttgacacctttttgttagtatcaattcagagagagacatttgcgtacatcccttggattttcatgatatgggtaaattttccactcattctactcttacttctagccgctgtattatgttttcagtttggccataacataaccgaggtttcagttaatatgtaatttgtggtgtattacttgctacctactcccattaaattgatgtttcttactgctgcctatgctcagactacaatcattggcagtccaagcagcctgcttcttgcctcttttaataagattacacatatatacatggattaattgtgtgattctctcaaatgcattgaaatctgaaggtgtatctacatagtttgtgtatatggatttattcactaattcttctgcaagcagacaatcttggtttgcagccccAagtaaaGggcaagtgtacgaaTttagccacAaaagcgacgccaacgaggaacgccatcgacggtgaccgctgctccatcgatccttcttcccccgcttgctactctcacttcgcagggtttagagatctcatctccaaaccacatgcctttactatcaccacactatttcgcTctctttctattcttttcattccccattttctctataccgaatatatgtttttagatcatcgagcgtcacacccttcctcaagtcaatcaaactatctttttgaaacagtagacggtaggagatctaccggATatattagaagaagagagttgaccctgtttataaGggaaaccgggccagaaaaccatacaactgcacggTttgctaagggAaaaccggcAaaaccttacacAgaagacacaaaaaaaacccgtgacaaaactatgaaccacAGaagtaaccgagagaggagcaagaccttcaagacgaagcctccaaggaggtgaacaacgacagaagccgctgCccacgcccgcccataactggactgggttttcacccAaagggagaaagagtccAcaaGacaacacctccaaggaGgaaacggcacccgcaggcgtcgatgtcgccgatcctggaagaccagacaGggctttcgcctaggactccctcaaaaggtgtaggaCctccaagaagccaaagcAaaagtgttaagagttgtcgttgcctagctcatcggctgacccgatgcagcagcttcgactccgccttaacacaaaagctcagcaccgaagaggaaaaacacaccgctccaaactcggcactaagataggtccacatagtcacagggcacatgaagcactggcgaggCataagagccctgacttcagacggactggaccaccttcaaggacgaacacttctcctcaaccaccgaaagactccacggccaggtctggaagacggCcaacagaaGggagaagcatcacggaggggaggagacctggccggcctgaagaggagctgagagttggagtcaggggaacccaggaccTCGgtgtcaaccatgtctccGgcgaggaactcctggtttcGCGggacaaaacctcacgactacggcaaccacctccaagataccaccagcgcagagagagaggagcgctggggcgagcagcagagcaattggacaactGgcagcagagatcaactggtagcagcgatggcgagaggaagGGAggaaggaaacctccacttctgcttcgcttgtgccgacggcacagagaggagaGggacatcacaagagagaataagggaatgaggggaggggggggaagaAGaGggtggttgtggagagggaggaggaagagagtagtggcGGgatggagaccccggccagccccgaccttgccgaccaccGgagacggcggccaccgtcagcgctggccttcgaccaccgGAgccagcggccgccgccagcaccgactccgcccacgcgccgctgcgcgagccgtcgccgCccacacgtcgcagcagcctcctccaccgccgaaaatcggagggcttgccagatccGgcgacggcgacgccagatctgccgccgcctagccgggagacctcgccgccacctctcaccggcgtaccgacgccggcgaACaccacctccatcacgccgaagagggagcgccgccgcggagaaggCcccgccgccgccatcctagctcaccagccggctttgccggcggtgagctccggcggcggcgaggtagggggaggggggagaggggggcGgcggcggcggcggtagggttcacccccgtgtcgcctgcgcgtgggcgacgcggggggatAaaatttcctgtctttttctatgtcAatcaaactatcatagatctaccattaaccctaagtactgttgacagccctaatcagtgattatgcttaagtgatctaacctacaaaccctctttgatattagctgacccagaaaaacctttctataaccattttattataGgggtagactaattgattgtatcatttaactatgtagatttggcatcctaaatatacacctattctattacatattctctcactaatcattatttcagttcagatataaatgttatactttttagcttgcccattattgaaacatgtatactcgtactttagcccctttcaattctttattttatattgtgtcatgacttgctaatatcgattcagttcctaatatttctaatataaaatttccccttttcaatacattagaacaATaccattacacgaaattacaataaataattaatactctttcacataaatcctttagctactatactgaaaaaaatacttacatcaactgtaaattattaagctttttcacagctatttagtcctattcttgcatcataattatcttatatcttaccgtagtatagccacttaacccagcacattatgttcttaccatatatatctttccaGctacaactaagatttacatcacataaatacttacatacatcaagttatagatcacatacttcattgcatttctaatatcccaaaactcaccctgtttgaaataaaaaaatataataaaaaactctaataactagctgagcctctcataactttttttatttatcaaatacatctaactacatgtgtatatatattgtagccacaatcatgtcttccgcagttttcgcatcaatgaggctgaatgcaacaaatcaaagctacttggtaagctcaaagtcaaacAaaactttctatgtacAatatgctgttagcaccagtgcggatatgatattttctttctacatcctgtgccaatcacacttgcgacagcatataagatgcagcgtggagataatctgaagttaaaaacttcccatggcttgaagataaagatcaaaatcaaggaagtagctagcacactgtacatgacgacatgatggaaatAAtttgtagaggcaactggattagAaactggagaaacgattcttttctggatgccatcacagtctaaagcgtgtgttatgatactgaacagacaaggccttattagatgtccagtgaagaccccatccaacagctcatcagcgaacaaaAGgCcccttgatccatcaggtcaattaaccagagcaagcacatttgaccatgcaccctagcaaaagcgttccattctgaggaatggaacaggtacaaagttgcctcatccatttttttcaacttacactacccattaacatgtctatttctgtttttcggccgggtaatagaagatataccattaatcagccagatactcctccaacttacatggctaaaaaacactgtgctatattgcctcctgcaaaattgcacatgctgGacaagtgatttaaatctttctatctatgtttctattcatatgtatcattttctgtcattttttactagcaggcagtaacaaaagaaaacctagcagacacctccttcgctgccacattaagctcacagctgaattgaagagttacatcaaagagattgcagattttctagaagaatcaaacAagttctatgtcgtgcgtatgaacagaacattcatggaacaggacagagtggtaatttttgacacaacatttccatcttcttataccatactgagcatataaatgtcactttttttttcagtactttgcgaccgagttttcaaagaaatacattgtgaacttggttcgagcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacAacttaacatcagggtggttagctttgcagcagccaacAgcatcaacttacacaatctgcatcttccactttttaggacaagtcacctcacgctcaccatagatgctctgtgAaagttacctgcatcttcagtagtcgctgctattatctacactggaacaactactatAattctctattatcctttgcttgcggtctatctaacttcacttgctctgtaagcacgtgacctataactgcTtatcattgtcctcagctccttttgttatccataagctgagtgaacaattaaccactttatgtacaaacagctggcttgttatactacagctactatggtactaTttgttgtttctttttacc
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| CDS seq | atgcagcagcttcgactccgccttaacacaaaagctcagcaccgaagaggaaaaacacaccgctccaaactcggcactaagataggtccacatagtcacagggcacatgaagcactggcgaggCataagagccctgacttcagacggactggaccaccttcaaggacgaacacttctcctcaaccaccgaaagactccacggccaggtctggaagacggCcaacagaaGggagaagcatcacggaggggaggagacctggccggcctgaagaggagctgagagttggagtcaggggaacccaggaccTCGgtgtcaaccatgtctccGgcgaggaactcctggtttcGCGggacaaaacctcacgactacggcaaccacctccaagataccaccagcgcagagagagaggagcgctggggcgagcagcagagcaattggacaactGgcagcagagatcaactggtagcagcgatggcgagaggaagGGAggaaggaaacctccacttctgcttcgcttccacaatcatgtcttccgcagttttcgcatcaatgaggctgaatgcaacaaatcaaagctacttggcagtaacaaaagaaaacctagcagacacctccttcgctgccacattaagctcacagctgaattgaagagttacatcaaagagattgcagattttctagaagaatcaaacAagttctatgtcgtgcgtatgaacagaacattcatggaacaggacagagtgtactttgcgaccgagttttcaaagaaatacattgtgaacttggttcgagcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacAacttaacatcagggtggttagctttgcagcagccaacAgcatcaacttacacaatctgcatcttccactttttaggacaagtcacctcacgctcaccatagatgctctgtgA
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| Protein seq | MQQLRLRLNTKAQHRRGKTHRSKLGTKIGPHSHRAHEALARHKSPDFRRTGPPSRTNTSPQPPKDSTARSGRRPTEGRSITEGRRPGRPEEELRVGVRGTQDLGVNHVSGEELLVSRDKTSRLRQPPPRYHQRRERGALGRAAEQLDNWQQRSTGSSDGERKGGRKPPLLLRFHNHVFRSFRINEAECNKSKLLGSNKRKPSRHLLRCHIKLTAELKSYIKEIADFLEESNKFYVVRMNRTFMEQDRVYFATEFSKKYIVNLVRARQQTLECRLQVDPQQLNIRVVSFAAANSINLHNLHLPLFRTSHLTLTIDAL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0021330 | OsLaMu_01g0021330.02 | Chr01 | 23265700 | 23268978 | + | NAM | ||
| CDS seq | aTgcttggctaccagtacatgtacaagttcaatcctccacaagcaattgagaaaggtgcagtttcatctgcatgtaacctaaataatttcacggtgctcaactggatcactgcgggtgtagtttcattgctcatttcccatcttggacaatcgaggtcattgagattaaactctgcttgcttcgcatcctccaatgatcttcttgttgataaaatgcagtatgttcagcatggatgtatgttcagcatggatggtgactttgctccattgcttgagcttatcaagttacacagaatgtatgggcttttgttggtcatggacgttgttatggttctctcccttgaaatacatatttttttcctgactattgacaatcttggtttgcagccccAagtaaaGggcaagtgtacgaaTttagccacAaaagcgacgccaacgaggaacgccatcgacggtgaccgctgctccatcgatccttcttcccccgcttgctactctcacttcgcagggaCctccaagaagccaaagcAaaagtgttaa
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| Protein seq | MLGYQYMYKFNPPQAIEKGAVSSACNLNNFTVLNWITAGVVSLLISHLGQSRSLRLNSACFASSNDLLVDKMQYVQHGCMFSMDGDFAPLLELIKLHRMYGLLLVMDVVMVLSLEIHIFFLTIDNLGLQPQVKGKCTNLATKATPTRNAIDGDRCSIDPSSPACYSHFAGTSKKPKQKC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0021330 | OsLaMu_01g0021330.04 | Chr01 | 23269012 | 23272388 | + | NAM | ||
| CDS seq | atgcagcagcttcgactccgccttaacacaaaagctcagcaccgaagaggaaaaacacaccgctccaaactcggcactaagataggtccacatagtcacagggcacatgaagcactggcgaggCataagagccctgacttcagacggactggaccaccttcaaggacgaacacttctcctcaaccaccgaaagactccacggccaggtctggaagacggCcaacagaaGggagaagcatcacggaggggaggagacctggccggcctgaagaggagctgagagttggagtcaggggaacccaggaccTCGgtgtcaaccatgtctccGgcgaggaactcctggtttcGCGggacaaaacctcacgactacggcaaccacctccaagataccaccagcgcagagagagaggagcgctggggcgagcagcagagcaattggacaactGgcagcagagatcaactggtagcagcgatggcgagaggaagGGAggaaggaaacctccacttctgcttcgcttccacaatcatgtcttccgcagttttcgcatcaatgaggctgaatgcaacaaatcaaagctacttggcagtaacaaaagaaaacctagcagacacctccttcgctgccacattaagctcacagctgaattgaagagttacatcaaagagattgcagattttctagaagaatcaaacAagttctatgtcgtgcgtatgaacagaacattcatggaacaggacagagtgtactttgcgaccgagttttcaaagaaatacattgtgaacttggttcgagcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacAacttaacatcagggtggttagctttgcagcagccaacAgcatcaacttacacaatctgcatcttccactttttaggacaagtcacctcacgctcaccatagatgctctgtgA
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| Protein seq | MQQLRLRLNTKAQHRRGKTHRSKLGTKIGPHSHRAHEALARHKSPDFRRTGPPSRTNTSPQPPKDSTARSGRRPTEGRSITEGRRPGRPEEELRVGVRGTQDLGVNHVSGEELLVSRDKTSRLRQPPPRYHQRRERGALGRAAEQLDNWQQRSTGSSDGERKGGRKPPLLLRFHNHVFRSFRINEAECNKSKLLGSNKRKPSRHLLRCHIKLTAELKSYIKEIADFLEESNKFYVVRMNRTFMEQDRVYFATEFSKKYIVNLVRARQQTLECRLQVDPQQLNIRVVSFAAANSINLHNLHLPLFRTSHLTLTIDAL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0021330 | OsLaMu_01g0021330.01 | Chr01 | 23265076 | 23272408 | + | NAM | ||
| CDS seq | atgccggccgctgcgtgcgcctctgcggctgggtcgctctccaccgcgcccacgccggcctcaccttcctcattctgcgaccactctggcatggtcttgcttggctaccagtacatgtacaagttcaatcctccacaagcaattgagaaaggtgcagtttcatctgcatgtaacctaaataatttcacggtgctcaactggatcactgcgggtgtagtttcattgctcatttcccatcttggacaatcgaggtcattgagattaaactctgcttgcttcgcatcctccaatgatcttcttgttgataaaatgcagtatgttcagcatggatgtatgttcagcatggatggtgactttgctccattgcttgagcttatcaagttacacagaatgtatgggcttttgttggtcatggacgttgttatggttctctcccttgaaatacatatttttttcctgactattggtaatcaagtaatgtgccttggacagtttgagatcattgcgatgttggtgtaa
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| Protein seq | MPAAACASAAGSLSTAPTPASPSSFCDHSGMVLLGYQYMYKFNPPQAIEKGAVSSACNLNNFTVLNWITAGVVSLLISHLGQSRSLRLNSACFASSNDLLVDKMQYVQHGCMFSMDGDFAPLLELIKLHRMYGLLLVMDVVMVLSLEIHIFFLTIGNQVMCLGQFEIIAMLV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0021330 | OsLaMu_01g0021330.03 | Chr01 | 23265700 | 23268978 | + | NAM | ||
| CDS seq | aTgcttggctaccagtacatgtacaagttcaatcctccacaagcaattgagaaaggtgcagcttggacaatcgaggtcattgagattaaactctgcttgcttcgcatcctccatatgttcagcatggatggtgactttgctccattgcttgagcttatcaagttacacagaatgtatgggcttttgttggtcatggacgttgttatggttctctcccttgaaatacatatttttttcctgactattgacaatcttggtttgcagccccAagtaaaGggcaagtgtacgaaTttagccacAaaagcgacgccaacgaggaacgccatcgacggtgaccgctgctccatcgatccttcttcccccgcttgctactctcacttcgcagggaCctccaagaagccaaagcAaaagtgttaa
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| Protein seq | MLGYQYMYKFNPPQAIEKGAAWTIEVIEIKLCLLRILHMFSMDGDFAPLLELIKLHRMYGLLLVMDVVMVLSLEIHIFFLTIDNLGLQPQVKGKCTNLATKATPTRNAIDGDRCSIDPSSPACYSHFAGTSKKPKQKC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr01 | 23266539 | 23267081 | + | OsLaMu_01g0021330.01,OsLaMu_01g0021330.02 | OsLaMu_01g0021330.03,OsLaMu_01g0021330.02,OsLaMu_01g0021330.01 | All |
| SE | Chr01 | 23267132 | 23267530 | + | OsLaMu_01g0021330.01,OsLaMu_01g0021330.02 | OsLaMu_01g0021330.03,OsLaMu_01g0021330.02,OsLaMu_01g0021330.01 | All |
| SE | Chr01 | 23271018 | 23271721 | + | OsLaMu_01g0021330.01 | OsLaMu_01g0021330.04,OsLaMu_01g0021330.01 | All |
| AF | Chr01 | 23265076 | 23266482 | + | OsLaMu_01g0021330.01 | OsLaMu_01g0021330.03,OsLaMu_01g0021330.02,OsLaMu_01g0021330.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.216925 | 0.678255 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0541000 | SBH | 4.642141 | 2.897840 | 3.125316 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0541000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020530 | SBH | 1.835649 | 4.583171 | 18.625303 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0021900 | RBH | 0.457867 | 1.107903 | 3.728729 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002250 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002120 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0021400 | RBH | 15.366286 | 36.980900 | 74.839996 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0413800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021380 | RBH | 0.953485 | 0.769099 | 7.750226 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0402200 | RBH | 0.022047 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0013820 | SBH | 0.217419 | 0.162570 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002180 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002260 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0021590 | RBH | 2.930151 | 4.576266 | 5.654565 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021650 | RBH | 2.101015 | 19.576838 | 10.429717 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0021370 | RBH | 4.702482 | 55.199528 | 17.942265 |
