Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0021900 | OGI:01068910 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:22117338-22130975 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtcacgagggggaggcggaggcggcggcgctcgatggcggcgtgggagaggctggcggcggctagggtttgagggggcggcggtggcagcgcgagtggtagcggcggcgcgagtgggcggtggtggcgcgaggcgatggggacggagcgagggggaggcgaaggcggtgcttcgtggtggcacacatcggcggtggcttaggcagacgacatccatatggcaggggctactggcctcgccgccctcgtcgccatcctcagcctgccgtcgacttcaccgctgtcagaaccctgaaccagaaatggagaaacagagtagcgatttgtgaattttggtaggatttgggtggccgccgcaagactatctcctagggttctaagttagctactcctaagacaaatagaaattgtgattcttcttatcttcttcccacagcaaaagccagcttaagtaagtttacagcagctaaaattattacagtgaatgtaaagagcaaaacgacaagctttgatagctacagcgacttctcatgacgttaacaccgtcggatccctctctcgaacacgtggctttgtctcatctcttagatcttcattacccaggatgaaacgttttctccctcctttgcatcttcagttaactgaaactctgaactttctgaaatttcctccattcttcttacgagtctgacattactccccccttaagcccaaccttgtcctcaaggttgaaaatttggaaacactttctgaatataagaagcatcctcccaggttgcttcagccggagttaaattgctccacagaattagccattgagtgacagcaacattgttccttggaatcattctcctttgcagcactgctactggctctgttttgatttgaccatctggtcccactgccggtaaatttggcattggtacagcatgagtacccaggtgctttttaagttggctcacatggaagaccggatgtagagcagcttcttcaggtaactgcaatctataagctacagcacctaccttctctagcaccttgaatggcccatagtatttgcctcttaactttaatgatcctctgatcccaaaagcattttgtctatagggttgtagtttcagatataccatatctcccacctccagctttctctctgttcgattcctatcagcataatacttcatccttctttgtgcatcttccatgcttgctttgagtttctgaactatagcctctttctcttccagggttacccttgcttcttgagatacatcacatgggacagaaaattcactgatttgaggtggactgtatccataaagggccttgaatggagtcatttgtattgctgtgtggtatgttgtgttataccaccattctgctaaagctatccaagagcaccaattttgtggttcttgaaatgtcatgcaccttaagtaagattctaaacactggttcaccctctcagtttgcccatctgtctggggatggtaagctgtgctaaacctcaattggaccttttgagatttgaacacttcttgaaagaatgtgctagtaaaaactctgtccctatctgtcacaatagctatcggcatcccatgcagtttgtgaatattatccataaacacctgcaccacttcctccactgtgtatgggtgggataaagctatgaaatgtgcatatttggttaacctatcctccactaccaaaatcacatccttccccttggactttggtaacccttctacaaagtccatggatatatgtgtccaagccatgtctggtacctctagagggtttaaaagacctggtatatgcacatgttcagatttagtaacctgacatactggacaatttcttatgtgattttccactcccttcttcaatcctggccaataaaacagcttcttaatcctttggtatgtggctctaattccagagtgccccccaaaagtcgaactatgaaaagcttgtattaactgccctctgatttctcctgtttcccccacatatattcttcctttatatttcataattccagcctcaaacttatactccccttgtggatcccctgctgtgccaattaaactcagcaacttatgagcttgaacatcctcttcataacttcttttaatatccagtatccactcaggcaccaccacagcaatagctgcacaaagttcagtcacttcttccttgtttttcgggctcctagatagggcatctgctactaagttctccctaccagccttgtactcaatagtgtaattatattccatcagtttaagcaataacttgtgttgtatcccttccaccagtctttggttcatcatgtacttaagactctgctgatctgttttgatgactaattctccacccaaaacataatgcctccatctctttaaagcctctagtatagccatagcctctttctcataaattgactgagctgctgcttttggccctagagccttgctataataagcaattggccttcctgcctgcatcaaaactgctccaataccaacttcgcaagcatctgcttcaatcacaaacggctgctcaaagtttggtaaggctaacactggactagtacacagcttcccttttagctctgtaaatgcttcagattgagctaacccccaattgaaacctcctttcttcaacatgtcgtgaaggggtctgcagattaacccatacccttttataaatcttctataatacccagtcatccccaagaattccctgacttcagtcacatttttaggttccttccgattcatgatatcactgatcttgctaggatctgttgccactccatccgaagatatcacatgtcccaagtaagccacactgctcagaccaaaagcacacttcttaagccgtaccaccaactggttcttctccaggacttgcaatactgccttgatatgcttgatatgttcctcccttgttttgctataaatcaagatgtcatcaaaaaacacaagaacaaactttcttaaaaaaggtgctagaacttggttcattagtgactgaaaagtggcaggtgcattagttaacccaaatggcattacttggtactcatagtgacccatgtgtgttttgaaggcagttttaggaatatcttcctcagccattctaatctgatgatatcccgaccttaagtccagcttagaaaatattctagccccatgtaactcatccaacaagtcatctataattggcataggaaacttgttcttcactgtttgggcattcagctgtcggtagtctacacacattctccaagatccatccctttttctaaccattacagctggacaggcataagggctgtcactgaacctaatctccttcgactggatcagatctgatattatgttctccatggcctccttttggtaatgtggcactctatagggtctctggttgggaggttctgacccaggtttcaagtttatcacatggtcacaagctcttcttggaggtaagccttttggctccttcatcactcctgggaactgtgataaaacttcctgaacatctgctggcactgcagcctcctccttcctctcttcttcagtcatcgcattcacttgtaacacacaccccacagctcctttttttatcagcttctccattttatgaccatcaattaagaaatgtttcccaggtttagtgaaatcctgaaattcaactagcttaccttccttggtgatagacagttccctctgtttgagatccaaagtaattggactatgccgaaaaatccagtctgcccccaagattacatcatatcccttcaaggtgatcaagctgaaagcattaacaaatttcaccccttgaattttatatgccacttctgggactacaagattagatttcaattctcctcctcctgctactatcaccttcttaatagtcgaggttgctataggacacttgcacttaactgcaaactcatgggtcatgaaagtcccagtactcccactatcaattagaccaactgcttgtttcccattgatcatgattaggactgaaaaagtatcaggccgagttgtgccagaagctgcactaaatgacacactcattaactcctcatgtgctccctcctgcttaggtgcctctatttggtcagtggccagctcctcttgttccttctcttttgattcatcctcctcctcttcagtacaaggttcattctctaccagtaaagcattgatagcttgcttcaccttgcattggtgtctaggaaaccatggttccttacaaaaccagcattttctgtcttctttcttctcaccatcacccctttgtggtctattatttgtgttcctgccaggattgttgaaattggtgttctgatttctgtttctgctgaaattcagtgccaccttccttgcattagctgccttctcatagttctttgcataccaataggactccaacagaccttgtggtttttgcccacacacatcatgcttgatatcccctctaagcccaccaatgaagcagctattcagatactgttcctgtaagtaaggatggtccctcctgactagatccacatactcctcaaatttatctatatattgttccacagttgaaccatactgcttaacattctggaatagttccactgcctcatgctcatttgcagccgaaaaacgagtgctcaccatgtgacaccattgtggccaaggaatcaactgccaaggaatacctactcctctaaaccacttcattgctcttccctgcagatgtgcaattgccagattgacccattgatcatatggtgtcccagtaatctcgtagaatttctcacattgcttcaaccagtcaatgggatcttctcctgtgaacagtggtatttccaaccgaggtcccttgattacagcttcagcataatgttgattttctccttgataaaccataccaccaggtctgctatgatctaatatgtgaaccccttgttgcccagtgcctgagctagtggctgtcccttgtgtttgaaaatttgaattgggcactcttcccccaactgttgtttgagtttgaaaaggagctgagtttaagaaaggtaccctctggtttggaaatggggcaaatggtatgaatggtggaggttttgataatacagtagtcacctgccccaaatctgtctgaacactactgactcccccctgtggtctagcttcttgacccataggtgcagataggctcatagtatttggttcaatagagaactgaactcccaaactaggcgtggttacctgcacagatcgactgggtcctgcttctcccgtgctcttctcttttgttgcagcatctcccacaggattctcctgtccctcgttccccttctgtttgcacaactccagcagaaggtccttgatctccttcacctatgacctcaagcccttaagctctactacttccttcttcagagatgccacatctgagcgaaactcattcatctcctccagtcccacaatctcatcgtttgagcgcgtcttggtcaccatttcgcccctgcaggttaggttcagaattcaagattcctcccctattacccctgcagtcggatctaccgccgccaacctcaaatcagaagcgccggagattttacaggtgcacaccacgaaggtggcaacccaacccttgctgtccgatctgaagcaccactcgcctccggattgaatccctcctagctcaggaattttacggtggatctcaccgccgccttccaccaaccttcaccagagagatccaagagccaaggattcgctcgtgctctgatacctctgtcagaaccctgaaccagaaatggagaaacagagtagcgatttgtgaattttggtaggatttgggtggccgccgcaagactatctcctagggttctaagttagctactcctaagacaaatagaaattgtgattcttcttatcttcttcccacagcaaaagccagcttaagtaagtttacagcagctaaaattattacagtgaatgtaaagagcaaaacgacaagctttgatagctacagcggcttctcatgacgttaacaccgtcggatccctctctcgaacacgtggctttgtctcatctcttagatcttcattacccaggatgaaacgttttctccctcctttgcatcttcagttaactgaaactctgaactttctgaaatttcctccattcttcttacgagtctgacaaccgccgtcttcaacttgctggtctacccgctcgctgccatcggagtggccggatctgatggccatgacctcaaggccgccggatccgatgccatctcgtcttcctcctcgaaaacccaggcccccttctcttcgtctactcgctttcccaccgtctccaagtccaatctaatggcttcctctcttctctgcgcctcgccgctctccttcctctcccgcctaaagccgctcaaccctaggctgcccgcctcgcacctcctccgcctccttctgctctccaccaccacctccaccacgtaggcctcgtgctcaccgtctccgctccgaaccctagcggccaccaacaccgtgaccccgcggccgaggcgaagctcgagaggctgcagccgctgcagtggcctacgagggacgagctgtgtgacgagctcggcgccggtgatgccggccgctgcgtgcgcctctgcggctgggtcgctctccaccgcgcccacgccggcctcaccttcctcattctgcgaccactctggcatggtcttggtgagtggttgttattgttagtggtgttagtgatagactgatgctgataatttacgattgtgtttgttgcccatgtggtaactgcgagcctgtgattgcaattgttgcacgcaggtgtattgttgtttgatcgttctcgttagtgattagtcatactaatctacatgctaatgctctagatattactactttataacagttggtggttccacatttttactgcatgtttcattgctcagtatgtatcatcgagaatggtcagttgtattgtcaggttaatgacgtgatagtatttgtagcactgacattacctactgttttcctgttgtattgagtggttttggcaatgtttgcaggtacggattcccaataaactgatgttcggtgatctaataagtgaaggcaaaatgaagtaatataatcgcatcaatttgtaatgttgtggggagttgattttgtttttgtttttctgtactgatgaggtgtaggctagcagcgcccgccaaccggcactgaggtaaggagttccacaaccacagcactcagatgcaaataatgggcatgcctctgtctaagctgctaagtagagaagcacactgcaaataagagctgagtgagctaggacctgccaatctctgttttctcttgttcttggattgcaatttttgattttagattggatatttgagagaatgcataggaaagggaaaggaaaagggaaagggatgcctttacattatacttatctttccttacgttacccatctcagatgtggtcatagtaatatactttttcctttgtgccacttatctttcctttctatgctccactgatatatcagctggtccatgtgccatttggtgattgctgcttacatagttgtttttatttatctccgtacgctatgtgatgttatattcccttctcgatatatgttcagccattcaatcagttttgattagttaatgttcatgcatcagatttgttaatacaaaatgttctctgatctggtattcagcttggctaccagtacatgttacaagttcaatcctccacaagcaattgagaaaggttgcaggtgagaggcaagcagaagcatgacaggaatattgatttacttacatgataaccgttgtgccattaggtactaatactaacaccattattttaaatcatgccccttctatagcttgcttctttggctgcatgtactatagctgattctttgctgttatatgatattttgaacttcctacagatgttgtatatgctatttaattttcattttttgttttcatgctctgcagtttcatctgcatgtaacctaaataatttcacggtgctcaactggatcactgcgggtgtagtttcattgctcatttcccatgtgagtattaatttattggcaatcctaattgtagctgccatttgatctcctttgtgatgttttacccgtccaaatttttatcccaacgggcatccttgaggtatatctgtgtttatgttataggtgcgcgctgatgcttggttttgcttcatttaatggcttagcttgattaacctgaaaatgtgaattgtgctcttaggggtttttataccatataatgtaatctcttatctttttcagccttggacaatcggaggtcattgagattaaactctgcttgcttcgcatcctccagtaagtgtaagacttaaaaaaaaatccatgggtatttttttcacttcccagtcgtaacatacatgtcataatgttaagcactaattgatttagttataaactatgtttgtgattacactagcaggtcccattaatcaatggaaaatattctttttttcgcacatagacaagttatatttccaagtaaatttcttcattcaaaaatcacttattttggtatcaatggctagcgtaaccaactcagatgatcttcttgttgataaaatgcagtatgttcagcatggatggtgactttgctccattgcttgagcttatcaagttacacagaatgtatgggcttttgttggtcatggacgttgttagtgtttctctcccttgaaatacatatttttttcctgactattggtaatcaagtaatgttgtaattttccttttcaaggcacacagttctcacttgtttgtggtggtgatggtggtggtttttaacatataatgtgatatcttttctttttcagccttggacagttggagatcattgcgatgttggtgtaattgggcttactaagtgctctggtactcatgggcttcttccctgttttgacacctttttgttagtatcaattcagagagagacaatttgcgtacatcccttggatttcatgatatgggtaaattttccactcaattctactcttacttctagccgctgtattatgttttcagtttggccataacataaccgaggtttcagttaatatgtaatttgtggtgtattacttgctacctacagtcccattaaattgatgttttcttactgcctatgctcagactacaatcattggcagtccaagcagcctgcttcttgcctcttttaataagattacacatatatacatggattaattgtgtgattcttctcaaaatgcacttgaaatctgaaggtgtattctacatagtttgtgtatatggatttattcactaattcttctgcaagcagacaatcttggtttgcagccccaagtaaagggcaagtgtacgaatttagccacaaaagcgacgccaacgaggaacgccatcgacggtgaccgctgctccatcgatccttcttcccccgcttgctactctcacttcgcagggtttagagatctcatctccaaaccacatgcctttactatcaccacactatttcgctctctttctattcttttcattccccattttctctataccgaatatatgtttttagatcatcgagcgtcacacccttcctcaagtcaatcaaactatctttttgaaacagtagacggtaggagatctaccggatatattagaagaagagagttgaccctgtttataagggaaaccgggccagaaaaccatacaactgcacggtttgctaagggaaaaccggcaaaaccttacacagaagacacaaaaaaaacccgtgacaaaactatgaaccacagaagtaaccgagagaggagcaagaccttcaagacgaagcctccaaggaggtgaacaacgacagaagccgctgcccacgcccgcccataactggactgggttttcacccaaagggagaaagagtccacaagacaacacctccaaggaggaaacggcacccgcaggcgtcgatgtcgccgatcctggaagaccagacagggctttcgcctaggactccctcaaaaggtgtaggacctccaagaagccaaagcaaaagtgttaagagttgtcgttgcctagctcatcggctgacccgatgcagcagcttcgactccgccttaacacaaaagctcagcaccgaagaggaaaaacacaccgctccaaactcggcactaagataggtccacatagtcacagggcacatgaagcactggcgaggcataagagccctgacttcagacggactggaccaccttcaaggacgaacacttctcctcaaccaccgaaagactccacggccaggtctggaagacggccaacagaagggagaagcatcacggaggggaggagacctggccggcctgaagaggagctgagagttggagtcaggggaacccaggacctcggtgtcaaccatgtctccggcgaggaactcctggtttcgcgggacaaaacctcacgactacggcaaccacctccaagataccaccagcgcagagagagaggagcgctggggcgagcagcagagcaattggacaactggcagcagagatcaactggtagcagcgatggcgagaggaagggaggaaggaaacctccacttctgcttcgcttgtgccgacggcacagagaggagagggacatcacaagagagaataagggaatgaggggaggggggggaagaagagggtggttgtggagagggaggaggaagagagtagtggcgggatggagaccccggccagccccgaccttgccgaccaccggagacggcggccaccgtcagcgctggccttcgaccaccggagccagcggccgccgccagcaccgactccgcccacgcgccgctgcgcgagccgtcgccgcccacacgtcgcagcagcctcctccaccgccgaaaatcggagggcttgccagatccggcgacggcgacgccagatctgccgccgcctagccgggagacctcgccgccacctctcaccggcgtaccgacgccggcgaacaccacctccatcacgccgaagagggagcgccgccgcggagaaggccccgccgccgccatcctagctcaccagccggctttgccggcggtgagctccggcggcagcgaggtagggggaggggggagaggggggcggcggcggcggcggtagggttcacccccgtgtcgcctgcgcgtgggcgacgcggggggataaaatttcctgtctttttctatgtcaatcaaactatcatagatctaccattaaccctaagtactgttgacagccctaatcagtgattatgcttaagtgatctaacctacaaaccctctttgatattagctgacccagaaaaacctttctataaccattttattataggggtagactaattgattgtatcatttaactatgtagatttggcatcctaaatatacacctattctattacatattctctcactaatcattatttcagttcagatataaatgttatactttttagcttgcccattattgaaacatgtatactcgtactttagcccctttcaattctttatattttatatttgtgtcatgacttgctaatatcggattcagttcctaatatttctaatataaaaatttccctttttcaatacattagaacaataccattacacgaaattacaataaataattaatactctttcacataaatcctttagctactatactgaaaaaaatacttacatcaactgtaaattattaagctttttcacagctatttagtcctattcttgcatcataattatcttatatcttaccgtagtatagccacttaacccagcacattatgttcttaccatatatatctttccagctacaactaagatttacatcacataaatacttacatacatcaagttatagatcacatacttcattgcatttctacatatcccaaaatactcaccctgtttgaaaataaaaaaattataataaaaactctaataactagctgagcctctcataactttttttatttatcaaatacatctaactacatgtgtatatatattgtagccacaatcatgtcttccgcagttttcgcatcaatgaggctgaatgcaacaaatcaaagctacttggtaagctcaaagtcaaacaaaactttctatgtacaatatgctgttagcaccagtgcggatatgatattttctttctacatcctgtgccaatcacacttgcgacagcatataagatgcagcgtggagataatctgaagttaaaaacttcccatggcttgaagataaagatcaaaatcaaggaagtagctagcacactgtacatgacgacatgatggaaataatttgtagaggcaactggattagaaactggagaaacgattcttttctggatgccatcacagtctaaagcgtgtgttatgatactgaacagacaaggccttattagatgtccagtgaagaccccatccaacagctcatcagcgaacaaaaggccccttgatccatcaggtcaattaaccagagcaagcacatttgaccatgcatctcctagcaaaagcgttccatttctgaggaatggaacaggtacaaagtttgcctcatcacattttttcaacttacactacccattaacatgtctattctgttttcgccgggtaatagaagatatacaattaaatcagccagatactcctccaacttacattggctaaaaaacactgtgctatattgcctcctgcaaaattgcacatgctggacaagtgatttaaatctttctatctatgtttctattcatatgtaatcattttctgtcattttttactagcaggcagtaacaaaagaaaacctagcagacacctccttctgccaccagattaagctcacagctgaattgaagagttacatcaaagagattgcagattttctagaagaatcaaacaagttctatgtcgtgcgtatgaacagaacattcatggaacaggacagagtggtaatttttgacacaacatttccatcttcttatacccatactgagcatataaatgtcacttttctttttcagtactttgcgaccgagttttcaaagaaatacattgtgaacttggttcgaggcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacaacttaacatcagggtggttagctttgcagcagccaacagcatcaacttacacaatctgcatcttccactttttaggacaagtcacctcacgctcaccatagatgctctgtgaaagttacctgcatcttcagtagtcgctgctattatctacactggaacaactactataattctctattatcctttgcttgcggtctatctaacttcacttgctctgtaagcacgtgacctataactgcttatcattgtcctcagctccttttgttatccataagctgagtgaacaattaaccactttatgtacaaacagctggcttgttatactacagctactatggtactatttgttgtttctttttaccatatgctttttagcttttcttagtt
More
|
||||||||||
| CDS seq | atgtcacgagggggaggcggaggcggcggcgctcgatggcggcgtgggagaggctggcggcggctagggtttgagggggcggcggtggcagcgcgagtggtagcggcggcgcgagtgggcggtggtggcgcgaggcgatggggacggagcgagggggaggcgaaggcggctagcagcgcccgccaaccggcactgagccttggacaatcggaggtcattgagattaaactctgcttgcttcgcatcctccatatgttcagcatggatggtgactttgctccattgcttgagcttatcaagttacacagaatgtatgggcttttgttggtcatggacgttccttggacagttggagatcattgcgatgttggtgtaattgggcttactaagtgctctggtactcatgggcttcttccctgttttgacacctttttgttagtatcaattcagagagagacaatttgcgtacatcccttggatttcatgatatggccccaagtaaagggcaagtgtacgaatttagccacaaaagcgacgccaacgaggaacgccatcgacggtgaccgctgctccatcgatccttcttcccccgcttgctactctcacttcgcaggccacaatcatgtcttccgcagttttcgcatcaatgaggctgaatgcaacaaatcaaagctacttgaggcaactggattagaaactggagaaacgattcttttctggatgccatcacagtctaaagcgtgtgttatgatactgaacagacaaggccttattagatgtccagtgaagaccccatccaacagctcatcagcgaacaaaaggccccttgatccatcaggtcaattaaccagagcaagcacatttgaccatgcatctcctagcaaaagcgttccatttctgaggaatggaacagtaacaaaagaaaacctagcagacacctccttctgccaccagattaagctcacagctgaattgaagagttacatcaaagagattgcagattttctagaagaatcaaacaagttctatgtcgtgcgtatgaacagaacattcatggaacaggacagagtgtactttgcgaccgagttttcaaagaaatacattgtgaacttggttcgaggcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacaacttaa
More
|
||||||||||
| Protein seq | MSRGGGGGGGARWRRGRGWRRLGFEGAAVAARVVAAARVGGGGARRWGRSEGEAKAASSARQPALSLGQSEVIEIKLCLLRILHMFSMDGDFAPLLELIKLHRMYGLLLVMDVPWTVGDHCDVGVIGLTKCSGTHGLLPCFDTFLLVSIQRETICVHPLDFMIWPQVKGKCTNLATKATPTRNAIDGDRCSIDPSSPACYSHFAGHNHVFRSFRINEAECNKSKLLEATGLETGETILFWMPSQSKACVMILNRQGLIRCPVKTPSNSSSANKRPLDPSGQLTRASTFDHASPSKSVPFLRNGTVTKENLADTSFCHQIKLTAELKSYIKEIADFLEESNKFYVVRMNRTFMEQDRVYFATEFSKKYIVNLVRGKTANIRVQIAGRPSTT |
||||||||||
| Function | Putative B3 domain-containing protein Os10g0158600 [UniProtKB/Swiss-Prot:Q7XGM6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0021900 | OsKeNa_01g0021900.02 | Chr01 | 22117338 | 22130930 | + | NAM | ||
| CDS seq | atgtcacgagggggaggcggaggcggcggcgctcgatggcggcgtgggagaggctggcggcggctagggtttgagggggcggcggtggcagcgcgagtggtagcggcggcgcgagtgggcggtggtggcgcgaggcgatggggacggagcgagggggaggcgaaggcggctagcagcgcccgccaaccggcactgagccttggacaatcggaggtcattgagattaaactctgcttgcttcgcatcctccatatgttcagcatggatggtgactttgctccattgcttgagcttatcaagttacacagaatgtatgggcttttgttggtcatggacgttccttggacagttggagatcattgcgatgttggtgtaattgggcttactaagtgctctggtactcatgggcttcttccctgttttgacacctttttccacaatcatgtcttccgcagttttcgcatcaatgaggctgaatgcaacaaatcaaagctacttgcatataagatgcagcgtggagataatctgaagttaaaaacttcccatggcttgaagataaagatcaaaatcaaggaagtagctagcacactgtacatgacgacatga
More
|
|||||||
| Protein seq | MSRGGGGGGGARWRRGRGWRRLGFEGAAVAARVVAAARVGGGGARRWGRSEGEAKAASSARQPALSLGQSEVIEIKLCLLRILHMFSMDGDFAPLLELIKLHRMYGLLLVMDVPWTVGDHCDVGVIGLTKCSGTHGLLPCFDTFFHNHVFRSFRINEAECNKSKLLAYKMQRGDNLKLKTSHGLKIKIKIKEVASTLYMTT
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0021900 | OsKeNa_01g0021900.03 | Chr01 | 22123699 | 22130930 | + | NAM | ||
| CDS seq | atgccatcacagtctaaagcgtgtgttatgatactgaacagacaaggccttattagatgtccagtgaagaccccatccaacagctcatcagcgaacaaaaggccccttgatccatcaggtcaattaaccagagcaagcacatttgaccatgcatctcctagcaaaagcgttccatttctgaggaatggaacagtaacaaaagaaaacctagcagacacctccttctgccaccagattaagctcacagctgaattgaagagttacatcaaagagattgcagattttctagaagaatcaaacaagttctatgtcgtgcgtatgaacagaacattcatggaacaggacagagtgtactttgcgaccgagttttcaaagaaatacattgtgaacttggttcgaggcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacaacttaa
More
|
|||||||
| Protein seq | MPSQSKACVMILNRQGLIRCPVKTPSNSSSANKRPLDPSGQLTRASTFDHASPSKSVPFLRNGTVTKENLADTSFCHQIKLTAELKSYIKEIADFLEESNKFYVVRMNRTFMEQDRVYFATEFSKKYIVNLVRGKTANIRVQIAGRPSTT |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0021900 | OsKeNa_01g0021900.01 | Chr01 | 22117338 | 22130930 | + | NAM | ||
| CDS seq | atgtcacgagggggaggcggaggcggcggcgctcgatggcggcgtgggagaggctggcggcggctagggtttgagggggcggcggtggcagcgcgagtggtagcggcggcgcgagtgggcggtggtggcgcgaggcgatggggacggagcgagggggaggcgaaggcggctagcagcgcccgccaaccggcactgagccttggacaatcggaggtcattgagattaaactctgcttgcttcgcatcctccatatgttcagcatggatggtgactttgctccattgcttgagcttatcaagttacacagaatgtatgggcttttgttggtcatggacgttccttggacagttggagatcattgcgatgttggtgtaattgggcttactaagtgctctggtactcatgggcttcttccctgttttgacacctttttgttagtatcaattcagagagagacaatttgcgtacatcccttggatttcatgatatggccccaagtaaagggcaagtgtacgaatttagccacaaaagcgacgccaacgaggaacgccatcgacggtgaccgctgctccatcgatccttcttcccccgcttgctactctcacttcgcaggccacaatcatgtcttccgcagttttcgcatcaatgaggctgaatgcaacaaatcaaagctacttgaggcaactggattagaaactggagaaacgattcttttctggatgccatcacagtctaaagcgtgtgttatgatactgaacagacaaggccttattagatgtccagtgaagaccccatccaacagctcatcagcgaacaaaaggccccttgatccatcaggtcaattaaccagagcaagcacatttgaccatgcatctcctagcaaaagcgttccatttctgaggaatggaacagtaacaaaagaaaacctagcagacacctccttctgccaccagattaagctcacagctgaattgaagagttacatcaaagagattgcagattttctagaagaatcaaacaagttctatgtcgtgcgtatgaacagaacattcatggaacaggacagagtgtactttgcgaccgagttttcaaagaaatacattgtgaacttggttcgaggcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacaacttaa
More
|
|||||||
| Protein seq | MSRGGGGGGGARWRRGRGWRRLGFEGAAVAARVVAAARVGGGGARRWGRSEGEAKAASSARQPALSLGQSEVIEIKLCLLRILHMFSMDGDFAPLLELIKLHRMYGLLLVMDVPWTVGDHCDVGVIGLTKCSGTHGLLPCFDTFLLVSIQRETICVHPLDFMIWPQVKGKCTNLATKATPTRNAIDGDRCSIDPSSPACYSHFAGHNHVFRSFRINEAECNKSKLLEATGLETGETILFWMPSQSKACVMILNRQGLIRCPVKTPSNSSSANKRPLDPSGQLTRASTFDHASPSKSVPFLRNGTVTKENLADTSFCHQIKLTAELKSYIKEIADFLEESNKFYVVRMNRTFMEQDRVYFATEFSKKYIVNLVRGKTANIRVQIAGRPSTT
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0021900 | OsKeNa_01g0021900.04 | Chr01 | 22126393 | 22130975 | + | IsoSeq | ||
| CDS seq | atggccacaatcatgtcttccgcagttttcgcatcaatgaggctgaatgcaacaaatcaaagctacttgcatataagatgcagcgtggagata |
|||||||
| Protein seq | MATIMSSAVFASMRLNATNQSYLHIRCSVEI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 22129552 | 22129781 | + | OsKeNa_01g0021900.02,OsKeNa_01g0021900.03,OsKeNa_01g0021900.04 | OsKeNa_01g0021900.01,OsKeNa_01g0021900.04,OsKeNa_01g0021900.03,OsKeNa_01g0021900.02 | All |
| A3 | Chr01 | 22130014 | 22130263 | + | OsKeNa_01g0021900.02,OsKeNa_01g0021900.04 | OsKeNa_01g0021900.03,OsKeNa_01g0021900.01,OsKeNa_01g0021900.04,OsKeNa_01g0021900.02 | All |
| SE | Chr01 | 22126445 | 22129488 | + | OsKeNa_01g0021900.01 | OsKeNa_01g0021900.03,OsKeNa_01g0021900.04,OsKeNa_01g0021900.01 | All |
| A5 | Chr01 | 22126387 | 22129488 | + | OsKeNa_01g0021900.03 | OsKeNa_01g0021900.03,OsKeNa_01g0021900.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.457867 | 1.107903 | 3.728729 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0571700 | RBH | 0.673650 | 1.116143 | 2.639069 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g39060 | RBH | 0.418620 | 0.705263 | 0.543733 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0571700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0022270 | RBH | 0.593444 | 1.881773 | 4.666736 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0008540 | RBH | 0.000000 | 0.000000 | 0.845160 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0022210 | RBH | 0.587772 | 4.019462 | 6.197453 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0021590 | RBH | 0.012522 | 0.244709 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0021400 | RBH | 15.366286 | 36.980900 | 74.839996 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0371900 | RBH | 10.256493 | 53.2645395 | 56.420504 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021380 | RBH | 0.953485 | 0.769099 | 7.750226 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0358800 | RBH | 10.7300365 | 80.7538265 | 51.3736475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0021350 | RBH | 0.632485 | 0.665053 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0021260 | RBH | 1.383924 | 19.148361 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0021510 | RBH | 5.164667 | 6.469573 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0021590 | RBH | 2.930151 | 4.576266 | 5.654565 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0021330 | RBH | 0.216925 | 0.678255 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021650 | RBH | 2.101015 | 19.576838 | 10.429717 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0021360 | RBH | 1.400896 | 1.026720 | 5.190004 |
