Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0571700 | OGI:01068910 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:21956101-21963333 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTCGCTTTCCCACCGTCTCCAAGTCCAATCTAATGGCTTCCTCTCTTCTCTGCGCCTCGCCGCTCTCCTTCCTCTCCCGCCTAAAGCCGCTCAACCCTAGGCTGCCCGCCTCGCACCTCCTCCGCCTCCTTCTGCTCTCCACCACCACCTCCACCACGTAGGCCTCGTGCTCACCGTCTCCGCTCCGAACCCTAGCGGCCACCAACACCGTGACCCCGCGGCCGAGGCGAAGCTCGAGAGGCTGCAGCCGCTGCAGTGGCCTACGAGGGACGAGCTGTGTGACGAGCTCGGCGCCGGTGATGCCGGCCGCTGCGTGCGCCTCTGCGGCTGGGTCGCTCTCCACCGCGCCCACGCCGGCCTCACCTTCCTCATTCTGCGACCACTCTGGCATGGTCTTGGTGAGTGGTTGTTATTGTTAGTGGTGTTAGTGATAGACTGATGCTGATAATTTACGATTGTGTTTGTTGCCCATGTGGTAACTGCGAGCCTGTGATTGCAATTGTTGCACGCAGGTGTATTGTTGTTTGATCGTTCTCGTTAGTGATTAGTCATACTAATCTACATGCTAATGCTCTAGATATTACTACTTTATAACAGTTGGTGGTTCCACATTTTTACTGCATGTTTCATTGCTCAGTATGTATCATCGAGAATGGTCAGTTGTATTGTCAGGTTAATGACGTGATAGTATTTGTAGCACTGACATTACCTACTGTTTTCCTGTTGTATTGAGTGGTTTTGGCAATGTTTGCAGGTACGGATTCCCAATAAACTGATGTTCGGTGATCTAATAAGTGAAGGCAAAATGAAGTAATATAATCGCATCAATTTGTAATGTTGTGGGGAGTTGATTTTGTTTTTGTTTTTCTGTACTGATGAGGTGTAGGCTAGCAGCGCCCGCCAACCGGCACTGAGGTAAGGAGTTCCACAACCACAGCACTCAGATGCAAATAATGGGCATGCCTCTGTCTAAGCTGCTAAGTAGAGAAGCACACTGCAAATAAGAGCTGAGTGAGCTAGGACCTGCCAATCTCTGTTTTCTCTTGTTCTTGGATTGCAATTTTTGATTTTAGATTGGATATTTGAGAGAATGCATAGGAAAGGGAAAGGAAAAGGGAAAGGGATGCCTTTACATTATACTTATCTTTCCTTACGTTACCCATCTCAGATGTGGTCATAGTAATATACTTTTTCCTTTGTGCCACTTATCTTTCCTTTCTATGCTCCACTGATATATCAGCTGGTCCATGTGCCATTTGGTGATTGCTGCTTACATAGTTGTTTTTATTTATCTCCGTACGCTATGTGATGTTATATTCCCTTCTCGATATATGTTCAGCCATTCAATCAGTTTTGATTAGTTAATGTTCATGCATCAGATTTGTTAATACAAAATGTTCTCTGATCTGGTATTCAGCTTGGCTACCAGTACATGTTACAAGTTCAATCCTCCACAAGCAATTGAGAAAGGTTGCAGGTGAGAGGCAAGCAGAAGCATGACAGGAATATTGATTTACTTACATGATAACCGTTGTGCCATTAGGTACTAATACTAACACCATTATTTTAAATCATGCCCCTTCTATAGCTTGCTTCTTTGGCTGCATGTACTATAGCTGATTCTTTGCTGTTATATGATATTTTGAACTTCCTACAGATGTTGTATATGCTATTTAATTTTCATTTTTTGTTTTCATGCTCTGCAGTTTCATCTGCATGTAACCTAAATAATTTCACGGTGCTCAACTGGATCACTGCGGGTGTAGTTTCATTGCTCATTTCCCATGTGAGTATTAATTTATTGGCAATCCTAATTGTAGCTGCCATTTGATCTCCTTTGTGATGTTTTACCCGTCCAAATTTTTATCCCAACGGGCATCCTTGAGGTATATCTGTGTTTATGTTATAGGTGCGCGCTGATGCTTGGTTTTGCTTCATTTAATGGCTTAGCTTGATTAACCTGAAAATGTGAATTGTGCTCTTAGGGGTTTTTATACCATATAATGTAATCTCTTATCTTTTTCAGCCTTGGACAATCGGAGGTCATTGAGATTAAACTCTGCTTGCTTCGCATCCTCCAGTAAGTGTAAGACTTAAAAAAAAATCCATGGGTATTTTTTTCACTTCCCAGTCGTAACATACATGTCATAATGTTAAGCACTAATTGATTTAGTTATAAACTATGTTTGTGATTACACTAGCAGGTCCCATTAATCAATGGAAAATATTCTTTTTTTCGCACATAGACAAGTTATATTTCCAAGTAAATTTCTTCATTCAAAAATCACTTATTTTGGTATCAATGGCTAGCGTAACCAACTCAGATGATCTTCTTGTTGATAAAATGCAGTATGTTCAGCATGGATGGTGACTTTGCTCCATTGCTTGAGCTTATCAAGTTACACAGAATGTATGGGCTTTTGTTGGTCATGGACGTTGTTAGTGTTTCTCTCCCTTGAAATACATATTTTTTTCCTGACTATTGGTAATCAAGTAATGTTGTAATTTTCCTTTTCAAGGCACACAGTTCTCACTTGTTTGTGGTGGTGATGGTGGTGGTTTTTAACATATAATGTGATATCTTTTCTTTTTCAGCCTTGGACAGTTGGAGATCATTGCGATGTTGGTGTAATTGGGCTTACTAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTGTTAGTATCAATTCAGAGAGAGACAATTTGCGTACATCCCTTGGATTTCATGATATGGGTAAATTTTCCACTCAATTCTACTCTTACTTCTAGCCGCTGTATTATGTTTTCAGTTTGGCCATAACATAACCGAGGTTTCAGTTAATATGTAATTTGTGGTGTATTACTTGCTACCTACAGTCCCATTAAATTGATGTTTTCTTACTGCCTATGCTCAGACTACAATCATTGGCAGTCCAAGCAGCCTGCTTCTTGCCTCTTTTAATAAGATTACACATATATACATGGATTAATTGTGTGATTCTTCTCAAAATGCACTTGAAATCTGAAGGTGTATTCTACATAGTTTGTGTATATGGATTTATTCACTAATTCTTCTGCAAGCAGACAATCTTGGTTTGCAGCCCCAAGTAAAGGGCAAGTGTACGAATTTAGCCACAAAAGCGACGCCAACGAGGAACGCCATCGACGGTGACCGCTGCTCCATCGATCCTTCTTCCCCCGCTTGCTACTCTCACTTCGCAGGGTTTAGAGATCTCATCTCCAAACCACATGCCTTTACTATCACCACACTATTTCGCTCTCTTTCTATTCTTTTCATTCCCCATTTTCTCTATACCGAATATATGTTTTTAGATCATCGAGCGTCACACCCTTCCTCAAGTCAATCAAACTATCTTTTTGAAACAGTAGACGGTAGGAGATCTACCGGATATATTAGAAGAAGAGAGTTGACCCTGTTTATAAGGGAAACCGGGCCAGAAAACCATACAACTGCACGGTTTGCTAAGGGAAAACCGGCAAAACCTTACACAGAAGACACAAAAAAAACCCGTGACAAAACTATGAACCACAGAAGTAACCGAGAGAGGAGCAAGACCTTCAAGACGAAGCCTCCAAGGAGGTGAACAACGACAGAAGCCGCTGCCCACGCCCGCCCATAACTGGACTGGGTTTTCACCCAAAGGGAGAAAGAGTCCACAAGACAACACCTCCAAGGAGGAAACGGCACCCGCAGGCGTCGATGTCGCCGATCCTGGAAGACCAGACAGGGCTTTCGCCTAGGACTCCCTCAAAAGGTGTAGGACCTCCAAGAAGCCAAAGCAAAAGTGTTAAGAGTTGTCGTTGCCTAGCTCATCGGCTGACCCGATGCAGCAGCTTCGACTCCGCCTTAACACAAAAGCTCAGCACCGAAGAGGAAAAACACACCGCTCCAAACTCGGCACTAAGATAGGTCCACATAGTCACAGGGCACATGAAGCACTGGCGAGGCATAAGAGCCCTGACTTCAGACGGACTGGACCACCTTCAAGGACGAACACTTCTCCTCAACCACCGAAAGACTCCACGGCCAGGTCTGGAAGACGGCCAACAGAAGGGAGAAGCATCACGGAGGGGAGGAGACCTGGCCGGCCTGAAGAGGAGCTGAGAGTTGGAGTCAGGGGAACCCAGGACCTCGGTGTCAACCATGTCTCCGGCGAGGAACTCCTGGTTTCGCGGGACAAAACCTCACGACTACGGCAACCACCTCCAAGATACCACCAGCGCAGAGAGAGAGGAGCGCTGGGGCGAGCAGCAGAGCAATTGGACAACTGGCAGCAGAGATCAACTGGTAGCAGCGATGGCGAGAGGAAGGGAGGAAGGAAACCTCCACTTCTGCTTCGCTTGTGCCGACGGCACAGAGAGGAGAGGGACATCACAAGAGAGAATAAGGGAATGAGGGGAGGGGGGGGAAGAAGAGGGTGGTTGTGGAGAGGGAGGAGGAAGAGAGTAGTGGCGGGATGGAGACCCCGGCCAGCCCCGACCTTGCCGACCACCGGAGACGGCGGCCACCGTCAGCGCTGGCCTTCGACCACCGGAGCCAGCGGCCGCCGCCAGCACCGACTCCGCCCACGCGCCGCTGCGCGAGCCGTCGCCGCCCACACGTCGCAGCAGCCTCCTCCACCGCCGAAAATCGGAGGGCTTGCCAGATCCGGCGACGGCGACGCCAGATCTGCCGCCGCCTAGCCGGGAGACCTCGCCGCCACCTCTCACCGGCGTACCGACGCCGGCGAACACCACCTCCATCACGCCGAAGAGGGAGCGCCGCCGCGGAGAAGGCCCCGCCGCCGCCATCCTAGCTCACCAGCCGGCTTTGCCGGCGGTGAGCTCCGGCGGCAGCGAGGTAGGGGGAGGGGGGAGAGGGGGGCGGCGGCGGCGGCGGTAGGGTTCACCCCCGTGTCGCCTGCGCGTGGGCGACGCGGGGGGATAAAATTTCCTGTCTTTTTCTATGTCAATCAAACTATCATAGATCTACCATTAACCCTAAGTACTGTTGACAGCCCTAATCAGTGATTATGCTTAAGTGATCTAACCTACAAACCCTCTTTGATATTAGCTGACCCAGAAAAACCTTTCTATAACCATTTTATTATAGGGGTAGACTAATTGATTGTATCATTTAACTATGTAGATTTGGCATCCTAAATATACACCTATTCTATTACATATTCTCTCACTAATCATTATTTCAGTTCAGATATAAATGTTATACTTTTTAGCTTGCCCATTATTGAAACATGTATACTCGTACTTTAGCCCCTTTCAATTCTTTATATTTTATATTTGTGTCATGACTTGCTAATATCGGATTCAGTTCCTAATATTTCTAATATAAAAATTTCCCTTTTTCAATACATTAGAACAATACCATTACACGAAATTACAATAAATAATTAATACTCTTTCACATAAATCCTTTAGCTACTATACTGAAAAAAATACTTACATCAACTGTAAATTATTAAGCTTTTTCACAGCTATTTAGTCCTATTCTTGCATCATAATTATCTTATATCTTACCGTAGTATAGCCACTTAACCCAGCACATTATGTTCTTACCATATATATCTTTCCAGCTACAACTAAGATTTACATCACATAAATACTTACATACATCAAGTTATAGATCACATACTTCATTGCATTTCTACATATCCCAAAATACTCACCCTGTTTGAAAATAAAAAAATTATAATAAAAACTCTAATAACTAGCTGAGCCTCTCATAACTTTTTTTATTTATCAAATACATCTAACTACATGTGTATATATATTGTAGCCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGGTAAGCTCAAAGTCAAACAAAACTTTCTATGTACAATATGCTGTTAGCACCAGTGCGGATATGATATTTTCTTTCTACATCCTGTGCCAATCACACTTGCGACAGCATATAAGATGCAGCGTGGAGATAATCTGAAGTTAAAAACTTCCCATGGCTTGAAGATAAAGATCAAAATCAAGGAAGTAGCTAGCACACTGTACATGACGACATGATGGAAATAATTTGTAGAGGCAACTGGATTAGAAACTGGAGAAACGATTCTTTTCTGGATGCCATCACAGTCTAAAGCGTGTGTTATGATACTGAACAGACAAGGCCTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCGAACAAAAGGCCCCTTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTCCTAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGGTACAAAGTTTGCCTCATCACATTTTTTCAACTTACACTACCCATTAACATGTCTATTCTGTTTTCGCCGGGTAATAGAAGATATACAATTAAATCAGCCAGATACTCCTCCAACTTACATTGGCTAAAAAACACTGTGCTATATTGCCTCCTGCAAAATTGCACATGCTGGACAAGTGATTTAAATCTTTCTATCTATGTTTCTATTCATATGTAATCATTTTCTGTCATTTTTTACTAGCAGGCAGTAACAAAAGAAAACCTAGCAGACACCTCCTTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGATTGCAGATTTTCTAGAAGAATCAAACAAGTTCTATGTCGTGCGTATGAACAGAACATTCATGGAACAGGACAGAGTGGTAATTTTTGACACAACATTTCCATCTTCTTATACCCATACTGAGCATATAAATGTCACTTTTCTTTTTCAGTACTTTGCGACCGAGTTTTCAAAGAAATACATTGTGAACTTGGTTCGAGGCAAGACAGCAAACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAACATCAGGGTGGTTAGCTTTGCAGCAGCCAACAGCATCAACTTACACAATCTGCATCTTCCACTTTTTAGGACAAGTCACCTCACGCTCACCATAGATGCTCTGTGAAAGTTACCTGCATCTTCAGTAGTCGCTGCTATTATCTACACTGGAACAACTACTATAATTCTCTATTATCCTTTGCTTGCGGTCTATCTAACTTCACTTGCTCTGTAAGCACGTGACCTATAACTGCTTATCATTGTCCTCAGCTCCTTTTGTTATCCATAAGCTGAGTGAACAATTAACCACTTTATGTACAAACAGCTGGCTTGTTATACTACAGCTACTATGGTACT
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| CDS seq | TTTGTAGAGGCAACTGGATTAGAAACTGGAGAAACGATTCTTTTCTGGATGCCATCACAGTCTAAAGCGTGTGTTATGATACTGAACAGACAAGGCCTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCGAACAAAAGGCCCCTTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTCCTAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGGCAGTAACAAAAGAAAACCTAGCAGACACCTCCTTCTGCCACCAGATTAA |
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| Protein seq | FVEATGLETGETILFWMPSQSKACVMILNRQGLIRCPVKTPSNSSSANKRPLDPSGQLTRASTFDHASPSKSVPFLRNGTGSNKRKPSRHLLLPPD |
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| Function | Putative B3 domain-containing protein Os10g0158600 [UniProtKB/Swiss-Prot:Q7XGM6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0571700 | OsNip_01t0571700-01 | Chr01 | 21956101 | 21963333 | + | RAP2018-11-26 | ||
| CDS seq | TTTGTAGAGGCAACTGGATTAGAAACTGGAGAAACGATTCTTTTCTGGATGCCATCACAGTCTAAAGCGTGTGTTATGATACTGAACAGACAAGGCCTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCGAACAAAAGGCCCCTTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTCCTAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGGCAGTAACAAAAGAAAACCTAGCAGACACCTCCTTCTGCCACCAGATTAA
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| Protein seq | FVEATGLETGETILFWMPSQSKACVMILNRQGLIRCPVKTPSNSSSANKRPLDPSGQLTRASTFDHASPSKSVPFLRNGTGSNKRKPSRHLLLPPD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.673650 | 1.116143 | 2.639069 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0571700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0021900 | RBH | 0.457867 | 1.107903 | 3.728729 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0021400 | RBH | 15.366286 | 36.980900 | 74.839996 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021380 | RBH | 0.953485 | 0.769099 | 7.750226 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0008420 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0021590 | RBH | 2.930151 | 4.576266 | 5.654565 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021650 | RBH | 2.101015 | 19.576838 | 10.429717 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
