Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0013820 | OGI:01035050 | 8/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:11915338-11918690 | ||||||||
| Gene Symbol | RLCK31, OsRLCK31 | ||||||||||
| DNA seq | atgaaggagatggtggttgggtcggtggcttcggcgccggtggggaggtggggggcggcgtcgcccaggcgctcctggagaggatgaaggattacgggcaggagggcgttcacgctttgggacaacctctcgcctgaggacctggaactgctcgtcagggatatcgaggtgagtaagcccaatgcgctgcaggttgggagaattttgcgtcaaatgttgcttcttgcgttggtaacttttttccaatcgggagcttctgtccgtttctatttgccagggacgaactctgtataaaagtttgatatttttgccggaattctgcctgaaagctctggtcctgaatgtggttttggtctaagtatgaattctgtaggagtagcagttgatttatcaattgaaagttttactacggttcgtgggaagaggagtttggattccagtgataatttacttcacactttcacagttttgttgtcactatcaacaattatttatctgctctccatgggtcttaatcttcattgtttacactgcaaaatagcacaagagaaacccgcagcatgTttttgttgtcatttgagctagccatttcaacagtgactaatggacctacatataatgcatttttttcagagcctagatctttcaaggattgatcggatcatccagcgctcccttggatcacctcatgcaaaaaaaaacaaaaaaaaatgtctttccaatgtagaacattagagttatttataattttgtcatcacacttgccttaggttttttggataatgaaagctttacagaactcagtcaattacatcaagataattacatcaagatgataaaaccgtactgtgaaactttcttagtacttgccttaatcttatggtgtgattaatgttctttccaagtgcaggcttcctttgcccaccgtcaagctggtgtcggagtccagcgtgttgaaggtagaggagaggtcggtggtggaacaaggggctgaaggccatttcggaggggaagctagccgttatccttttagccggtggtgagatgctctaatagaaagattacctgaatttgctatttctgtactgtgtgcattgggaagcagcctccttatggtttgattcctcttcatgtgtgtgcaggagacttggcctggcagctctgatcctaaagggtgtttcggtaggttgattccactgcaatcttattaataattgactttatatgaacaaatgtatggatattttttcagttgaaaaaagtgaggtgctctgaattgtttttgttttacacaatgtttttttggttcagaaaccctttcaatattctaatgtgatgaacaaggttatgtcctttgagctcactgaatctgaaattttcaccttttatcttatttcacagttcaacatctggtgggataatcgatagagctatatatgcagaggataggacatggtgactttatgaaattggtaattgccatttgatgtgctacaataaaaagttgctttaactggcggagtacagtattaacaatctgctttttagtctgtaacagtgaaatatcttggaatataagtcgattacttaagatcttgttgaaggatatctggaattggctgcagagacaatcatttttgtggcagtcatgcccgggtagggtgtagagtactgcattacagtggatgttgatctacatgtaagtataggtgtttgaactactgccctctaatttagcatcatcttgagtcttttttctccatgcttaaatttaatttgttcatagttcagacatttcatctttattaaattaaatttatgctaagtatttggcatacaaactgtacactctaagttgacaaatctcatatatgctattatctccaaagatgttgcttccaaagataaaaactcaaaatctttagattttaaaattctatctcAaatctagtgggactgcactcaacttagttgatttgtgattgtttggtgaaacaatgtagtttttcaaataattatacttaacttatcacctatgtatagcttactgcaaagcataactcatgtatttcagtattgcatttctccttgcttttcaccaaataATatatagtacttgaactctatagtttcccgtcctgaatttgacaagaataagctaaaattacgggtaaagtttgctttggagtgtaaatttgctattctgccatagatttatagttacagctgggagctatttctagacagtcaactctcctgaaaatcgattcatattccaaaggcaaggcatcaggtatacctaacctctctttctatctaaattgatttgctttcttcccaggatataatcaaatacaaacaattacaaataacaaaatacggagtaacacaaaggcagttactaaagactccctatagtgttgtcactcgcattttagcatagcgatctcccacggacaaagttgtgctgaaacacggtctacatctatcatatagtgctgcagcatatgacctcataaaattttcagccctaccacccaccaacaacagaagatgttcactaagtcgcttcagtgctacacgttctagcaatgcctacgaacatctatagacattgttattcatttacatcatctgcatcttcccatccaatgaaaactcacatacaaatatattcgtgcaggtaaccgcgggcgtacatttagggagctgtgcttttgcgaaaaaaaatgtccagcccacaactgatctaaaaaagtacatcgaagctattaagcggttcctacaccattcaagcagcttctatgctgtaaccatcaacagcacattcatcaagcaagatagagttgtaagctcttgcaacaattatttatttttcccacccctatcattcatgataatattgcttttctaccactaataaagaactaacataccgtgcaattacagtactttacaaaggaattttcacagaactacataaaaccgctaatggaaggtaaaaaaccgtcgacactgaagtacaagtagcaggaggtatttcaaccagcatgatcctccacgtttcaacagatgaccgttgcaacttgaagaaagggtggacaaagttcgcagcacagatgacatagctctcggatcagtttgcatcttccatttctacaggacaacctgcctggaggttactattgatgtcctgtgaagaccatatgggcattcatagctatcttatgatcatgcttctgctgccagtaaacaagctgatcactatcaggatcggccgcttccctcccctggaactgttaccatgcttattagttctacaccttaggtgcttactatccatagtgcactag
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| CDS seq | atgaaggagatggtggttgggtcggtggcttcggcgccggtggggaggagggcgttcacgctttgggacaacctctcgcctgaggacctggaactgctcgtcagggatatcgagtgcaggcttcctttgcccaccgtcaagctggtgtcggagtccagcgtgttgaaggtagaggagaggtcggtggtggaacaaggggctgaaggccatttcggaggggaagctagccgttatccttttagccggtggagacttggcctggcagctctgatcctaaagggtgtttcggtaaccgcgggcgtacatttagggagctgtgcttttgcgaaaaaaaatgtccagcccacaactgatctaaaaaagtacatcgaagctattaagcggttcctacaccattcaagcagcttctatgctgtaaccatcaacagcacattcatcaagcaagatagagtttactttacaaaggaattttcacagaactacataaaaccgctaatggaaggacaacctgcctggaggttactattgatgtcctgtgaagaccatatgggcattcatagctatcttatgatcatgcttctgctgccagtaaacaagctgatcactatcaggatcggccgcttccctcccctggaactgttaccatgcttattagttctacaccttaggtgcttactatccatagtgcactag
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| Protein seq | MKEMVVGSVASAPVGRRAFTLWDNLSPEDLELLVRDIECRLPLPTVKLVSESSVLKVEERSVVEQGAEGHFGGEASRYPFSRWRLGLAALILKGVSVTAGVHLGSCAFAKKNVQPTTDLKKYIEAIKRFLHHSSSFYAVTINSTFIKQDRVYFTKEFSQNYIKPLMEGQPAWRLLLMSCEDHMGIHSYLMIMLLLPVNKLITIRIGRFPPLELLPCLLVLHLRCLLSIVH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0013820 | OsLima_01g0013820.01 | Chr01 | 11915338 | 11918690 | + | NAM | ||
| CDS seq | atgaaggagatggtggttgggtcggtggcttcggcgccggtggggaggagggcgttcacgctttgggacaacctctcgcctgaggacctggaactgctcgtcagggatatcgagtgcaggcttcctttgcccaccgtcaagctggtgtcggagtccagcgtgttgaaggtagaggagaggtcggtggtggaacaaggggctgaaggccatttcggaggggaagctagccgttatccttttagccggtggagacttggcctggcagctctgatcctaaagggtgtttcggtaaccgcgggcgtacatttagggagctgtgcttttgcgaaaaaaaatgtccagcccacaactgatctaaaaaagtacatcgaagctattaagcggttcctacaccattcaagcagcttctatgctgtaaccatcaacagcacattcatcaagcaagatagagtttactttacaaaggaattttcacagaactacataaaaccgctaatggaaggacaacctgcctggaggttactattgatgtcctgtgaagaccatatgggcattcatagctatcttatgatcatgcttctgctgccagtaaacaagctgatcactatcaggatcggccgcttccctcccctggaactgttaccatgcttattagttctacaccttaggtgcttactatccatagtgcactag
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| Protein seq | MKEMVVGSVASAPVGRRAFTLWDNLSPEDLELLVRDIECRLPLPTVKLVSESSVLKVEERSVVEQGAEGHFGGEASRYPFSRWRLGLAALILKGVSVTAGVHLGSCAFAKKNVQPTTDLKKYIEAIKRFLHHSSSFYAVTINSTFIKQDRVYFTKEFSQNYIKPLMEGQPAWRLLLMSCEDHMGIHSYLMIMLLLPVNKLITIRIGRFPPLELLPCLLVLHLRCLLSIVH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.217419 | 0.162570 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0541000 | RBH | 4.642141 | 2.897840 | 3.125316 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g20890 | RBH | 1.594112 | 2.561146 | 0.817400 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0541000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0014310 | SBH | 0.946484 | 7.387006 | 15.395485 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0014070 | SBH | 0.383648 | 2.292926 | 2.974219 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0014320 | SBH | 2.490438 | 0.815606 | 20.207672 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0013790 | RBH | 0.097794 | 0.229458 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013880 | RBH | 2.659545 | 1.865815 | 18.284103 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0193300 | SBH | 2.2804825 | 16.178295 | 4.517144 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0018910 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0190600 | SBH | 2.7538085 | 22.701965 | 11.333601 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0018800 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013840 | RBH | 3.864647 | 6.072633 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0013950 | RBH | 0.000000 | 0.000000 | 0.566293 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0013640 | RBH | 0.429806 | 2.041873 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013960 | RBH | 0.795083 | 0.550388 | 3.837579 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0018910 | SBH | 0.0 | 0.0 | 0.0 |
