Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0021370 | OGI:01068930 | 3/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:22431078-22434497 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcagcagcttcgactccgccttaacacaaaagctcagcaccgaagaggaaaaacacaccgctccaaactcggcactaagataggtccacatagtcacagggcacatgaagcactggcgaggcataagagccctgacttcagacggactggaccaccttcaaggacgaacacttctcctcaaccaccgaaagactccacggccaggtctggaagatggccaacagaagggagaagcatcacggaggggaggagacctggccggcctgaagaggagctgagagttggagtcaggggaacccaggacctcggtgtcaaccatgtctccggcgaggaactcctggttttgcgggacaaaacctcacgactacggcaaccacctccaagataccaccagcgcagagagaGAGgagcgctggggcgagcagcagagcaactggacaactggcagcagagatcaactggtagcagcgatggcgagaggaagggaggaaggaaacctccacttctgcttcgcttgtgccgacggcacagagaggagagggacatcacaagagagaataagggaatgaggGGAggggggggggaagaagagggtggttgtggagagggaggaggaagagagtagtggcgggatggagaccccggccagccccgaccttgccgaccacctgagacggcggccaccgtcagcgccggccttcgaccaccggagccagcggccgccgccagcaccgactccgcccacgcgccgctGCgcgagccgtcgccgcccacgcgtcgcagcagcctcctccaccgccgaaaatcggagggcttgccagatctggcgacggcgacgccagatctgctgccgcctagccGggagacctcgccgccacctctcaccggcgtaccgacgccggcgaacaccacctccatcacgccgaagagggagcgccgccgcggagaaggccccgccgccgccatcctagctcaccagccggctttgccggcggtgagctccggcggcggcgaggtagggggaggggggagaggggggcggcggcggcggcggtagggttcactcctgtGTCGCcTgcgcgtgggcgacgcggggggataaaatttcctgtctttttctatgtcaatcaaactatcatagatctaccattaaccctaagtactgttgacagccctaatcagtgattatgcttaagtgatctaacctacaaaccctctttgatattagctgacccagaaaaacctttctataaccaTTttattataggggtagactaattgATTGTAtCatttaactatgtagatttggcatcctaaatatacacctattctattacatattctctcactaatccttatttcagttcagatataaatgttatactttttagcttgcccattattgaaacatgtatactcgtactttagcccctttcaattcTttatattttatatttgtgtcatgacttgctaatatcggattcagttcctaatatttctaatataaaaatttccctttttcaatacattagaacaataccattacacgaaattacaataaataattaatactctttcacataaatcctttagctactatactgaaaaaaatacttacatcaactgtaaattattaagctttttcacagctatttagtcctattcttgcatcataattatcttatatcttaccgtagtatagccacttaacccagcacattatcttcttaccatatatatctttccagctacaactaagatttacatcacataaatacttacatacatcaagttatagatcacatacttcattgcatttctacatatcccaaaatactcaccctgtttgaaaataaaaaaattataataaaaactctaataactagctgagcctcTCATAACTTTTTTTATTTATCAAATACATCTAACTACATGTGTATATATATTGTAGCCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGGTGAGCTCAAAGTCAAACAAAACTTTCTATGTACAATATGCTGTTAGCACCAGTGCGGATATGATATTTTCTTTCTACATCCTGTGCCAATCACACTTGCGACAGCATATAAGATGCAGCGTGGAGATAATCTGAAGTTAAAAACTTCCCATGGCTTGAAGATAAAGATCAAAATCAAGGAAGTAGCTAGCACACTGTACATGACGACATGATGGAAATAATTTGTAGAGGCAACTGGATTAGAAACTGGAGAAACGATTCTTTTCTGGATGCCATCACAGTCTAAAGCGTTgtgttatgatactgaacagacaaggccttattagatgtccagtgaagaccccatccaacagctcatcagcgaacaaaaggccccttgatccatcaggtcaattaaccagagcaagcacatttgaccatgcatctcctagcaaaagcgttccatttctgaggaatggaacaggtacaaagtttgcctcatcacattttttcaacttacactacccattaaacatgtctattctgttttcgccgggtaatagaagatatacaattaaatcagccagatactcctccaacttacattggctaaaaaacactctgctatattgcctcctgcaaaattgcacatgctggacaagtgatttaaatctttctatctatgtttctattcatatgtaatcattttctgtcattttttactagcaggcagtaacaaaagaaaacctagcagacacctccttctgccaccagattaagctcacagctgaattgaagagttacatcaaagagattgcagattttctagaagaatcaaacaagttctatgtcgtgcgtatgaacagaacattcatggaacaggacagagtggtaatttttgacacaacatttccatcttcttatacccatacTGAGCATataaatgtcacttttctttttcagtactttgcgaccgagttttcaaagaaatacattgtgaacttggttcgaggcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacaacttaacatcagggtcgttagctttgcagcagccaacagcatcaacttacacaatctgcatcttccactttttaggacaagtcacctcacgctcaccatagatgctctgtgaaagttacctgcatcttcagtagtcgctgctattatctacactggaacaactactataattctctattatcctttgcttgcggtctatctaacttcacttgctctgtaagcacgtgacctataactgcttatcattgtcctcagctccttttgttatccataagctgagtgaacaattaaccactttatgtacaaacagctggcttgttatactacagctactatggtactatttgttgtttctttttaccat
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| CDS seq | atgcagcagcttcgactccgccttaacacaaaagctcagcaccgaagaggaaaaacacaccgctccaaactcggcactaagataggtccacatagtcacagggcacatgaagcactggcgaggcataagagccctgacttcagacggactggaccaccttcaaggacgaacacttctcctcaaccaccgaaagactccacggccaggtctggaagatggccaacagaagggagaagcatcacggaggggaggagacctggccggcctgaagaggagctgagagttggagtcaggggaacccaggacctcggtgtcaaccatgtctccggcgaggaactcctggttttgcgggacaaaacctcacgactacggcaaccacctccaagataccaccagcgcagagagaGAGgagcgctggggcgagcagcagagcaactggacaactggcagcagagatcaactgCCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGgcagtaacaaaagaaaacctagcagacacctccttctgccaccagattaagctcacagctgaattgaagagttacatcaaagagattgcagattttctagaagaatcaaacaagttctatgtcgtgcgtatgaacagaacattcatggaacaggacagagtgtactttgcgaccgagttttcaaagaaatacattgtgaacttggttcgaggcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacaacttaa
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| Protein seq | MQQLRLRLNTKAQHRRGKTHRSKLGTKIGPHSHRAHEALARHKSPDFRRTGPPSRTNTSPQPPKDSTARSGRWPTEGRSITEGRRPGRPEEELRVGVRGTQDLGVNHVSGEELLVLRDKTSRLRQPPPRYHQRRERGALGRAAEQLDNWQQRSTATIMSSAVFASMRLNATNQSYLAVTKENLADTSFCHQIKLTAELKSYIKEIADFLEESNKFYVVRMNRTFMEQDRVYFATEFSKKYIVNLVRGKTANIRVQIAGRPSTT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0021370 | OsNaBo_01g0021370.01 | Chr01 | 22431078 | 22434475 | + | NAM | ||
| CDS seq | atgcagcagcttcgactccgccttaacacaaaagctcagcaccgaagaggaaaaacacaccgctccaaactcggcactaagataggtccacatagtcacagggcacatgaagcactggcgaggcataagagccctgacttcagacggactggaccaccttcaaggacgaacacttctcctcaaccaccgaaagactccacggccaggtctggaagatggccaacagaagggagaagcatcacggaggggaggagacctggccggcctgaagaggagctgagagttggagtcaggggaacccaggacctcggtgtcaaccatgtctccggcgaggaactcctggttttgcgggacaaaacctcacgactacggcaaccacctccaagataccaccagcgcagagagaGAGgagcgctggggcgagcagcagagcaactggacaactggcagcagagatcaactgCCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGgcagtaacaaaagaaaacctagcagacacctccttctgccaccagattaagctcacagctgaattgaagagttacatcaaagagattgcagattttctagaagaatcaaacaagttctatgtcgtgcgtatgaacagaacattcatggaacaggacagagtgtactttgcgaccgagttttcaaagaaatacattgtgaacttggttcgaggcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacaacttaa
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| Protein seq | MQQLRLRLNTKAQHRRGKTHRSKLGTKIGPHSHRAHEALARHKSPDFRRTGPPSRTNTSPQPPKDSTARSGRWPTEGRSITEGRRPGRPEEELRVGVRGTQDLGVNHVSGEELLVLRDKTSRLRQPPPRYHQRRERGALGRAAEQLDNWQQRSTATIMSSAVFASMRLNATNQSYLAVTKENLADTSFCHQIKLTAELKSYIKEIADFLEESNKFYVVRMNRTFMEQDRVYFATEFSKKYIVNLVRGKTANIRVQIAGRPSTT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0021370 | OsNaBo_01g0021370.02 | Chr01 | 22433326 | 22434497 | + | IsoSeq | ||
| CDS seq | GCAACTGGATTAGAAACTGGAGAAACGATTCTTTTCTGGATGCCATCACAGTCTAAAGCGTTgtgttatgatactgaacagacaaggcct |
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| Protein seq | ATGLETGETILFWMPSQSKALCYDTEQTRP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.702482 | 55.199528 | 17.942265 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0021900 | SBH | 0.457867 | 1.107903 | 3.728729 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0021600 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0021400 | SBH | 15.366286 | 36.980900 | 74.839996 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0413800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021380 | SBH | 0.953485 | 0.769099 | 7.750226 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0402200 | RBH | 0.022047 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0021520 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0021590 | SBH | 2.930151 | 4.576266 | 5.654565 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0021330 | RBH | 0.216925 | 0.678255 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021650 | SBH | 2.101015 | 19.576838 | 10.429717 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0008760 | RBH | 0.305625 | 2.542152 | 2.630813 |
