Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g35930 | OGI:01059280 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:19884254-19886352 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTACATGACAGCAGGATGGGCCCAGTTTATAGAAGCAACTGGTCTGCAGGTTCAAGAGCCCGCCGTTTTCAGGGTTTTATCAACCTCGAAGATGCATTTCATCATATTTGCAAAGGACGGTTATCTTAGATGCCCAGTTCCAGACAAACCCAGAGACTCTGAACCGACCAGACAATCGTTTCGCACATCAAGCCCACAAGGTAAATGAACCGTATCTTACAGCTCATCTCCTGGCAAAACAAAAAAAAAAAAAAACATCCTGCTGTATACTGCCATATCTGCATCCATTAGCCTATCAACTTTATTACCTACTCTTGTCAATTTCTTTTTTTTTAAAACATTATTTCACTTGCAGGGAAAGCCACTACAATTACTTCGCCTATCCAATGCTGCATCAAAGGGAAGCTAAAACATGATGGCACATCCACTTCTGCAAGTACACATGGTTCACTTGATATTCTCAATATATTCATCACCATCTCTTTTCACCTACACTGCTATGTTCATTCACATCCCTTGTAACAGGCAACAACAGGCGCACTATCAGCGAAATGTGTTTCTGCACCAAGGACATCAGGTTATCAGCTGAAGTCAAGAACTACATCAAAGATATTGCGCCATTCCTCCAGCCCTCAGACAAATTTTATGTGACTGCCATAAATGCAACATTCATGAAGGAAGGGAGAGTGGTAAAATCACTAGCTCATTCCTCTTTTCTGCACTATACACTTAAAAACTAATGTTCTGTTTTTATCCAGTACTTAGTAAAGGAATTTTCAAAGAAGTACATTGCACCGCTTGCACGATGAAAAGACAGCACAAATCAAGGTACGAATTCCTGGACACCCCTCATCCACCATGGTTCTCCACAGATGCTACAACTTGAAATCGGGATGAACCCGTTTTGTGACAATCAACAACTTCCAGATTGGAACAATTTGCATATTCCACTTTTACAAGACAGATCGCCTGGAAGCAACGGCAGATGTCTTGTGAAGGCAATATGCATCGGCTACAACCTGTCATCCTCCTGTTATCGCCAAGTGACTCTGCCAGGGCTTTCTAAATATCTCCAGCCTGTTTCTATGTTTATTATTAGCGCCCTTTATAGCCTTTCTATAGACATCTAATTACCTTGTAAATATTGCACCCAAGCTAGCATGTGTGCCTCTCACTAGACACCAGGGTCGAACAACATCTCCAGTGCTGTAATCAGTTATTTTGGTCGTAGCTATATGCAATGGACAGCCTATGTGTATCTGTTCCATACCCTTTAATGCCCCGTCGGTCCTTCGTATTATACCATCCATGGTTCACTAGCTGCTCGATATTTTCGCGCTGTTACATACTATGCGTGTGCAATTATATGCAGGGTGCACAAAAAAAAAAAAAAAACTCATCATGTCGTTCCTACACAGATGCATTGTGCACAGGCGGCGCGCCAATGGCGCGCCCCAGCATCTAGTGCAGGTAAAACCGCGGGGTGTGTATCACTGCATCGCCTATCCGTTTCTAGGCAAAACTCAGATAATCACGTTGCCTCTGCTGCAAGTCACGTTGCCTCTGCTGCAAGTCTGCAACCAAGACTTGGCTTGCTGCAAGAAAACAGTATGGCTCCCTGCAAATATGCATCCACAAGAGAACAAGAGATGCACATCTGGGAAAATGCCTATAGATCAACAAGAGAGCATTTTTGGAGAACAAATAATGCACTCACAATAGAACCACATTGGCTGGTCGGTAGGTACCACAAATGGGCAACCAGACGTATGGCCTCCAATGCCGAACTGCTTGAACCAACCCAATGAGCTCCCTTTCATAAGCAGCAAGGCGAGGATGGCGTGGTGCTATCGGCCGACTAAAAAACGCCACTGGTCCAGCGCCTTGATGCAGGATGGCACCAAACCATGCACTCGACGCGTCACACTCGATGATGAAGGGCTGCGCGAAATCTGGAAGTTGCAGTGTTGGGGCAGACGTGATAGTGTGTTGGAGTGCCCGGAATGCGCGCTCCGCATCATCGGACCAAGCGAACGCTGCCTTCCTGAGGAGGCATGTTGTCACGCCCTGAAGTTATTCTCCCTAGCCAAAATTTAA
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| CDS seq | ATGTACATGACAGCAGGATGGGCCCAGTTTATAGAAGCAACTGGTCTGCAGGTTCAAGAGCCCGCCGTTTTCAGGGTTTTATCAACCTCGAAGATGCATTTCATCATATTTGCAAAGGACGGTTATCTTAGATGCCCAGTTCCAGACAAACCCAGAGACTCTGAACCGACCAGACAATCGTTTCGCACATCAAGCCCACAAGGGAAAGCCACTACAATTACTTCGCCTATCCAATGCTGCATCAAAGGGAAGCTAAAACATGATGGCACATCCACTTCTGCAAGCAACAACAGGCGCACTATCAGCGAAATGTGTTTCTGCACCAAGGACATCAGGTTATCAGCTGAAGTCAAGAACTACATCAAAGATATTGCGCCATTCCTCCAGCCCTCAGACAAATTTTATGTGACTGCCATAAATGCAACATTCATGAAGGAAGGGAGAGTGATGCATTGTGCACAGGCGGCGCGCCAATGGCGCGCCCCAGCATCTAGTGCAGGTACCACAAATGGGCAACCAGACGTATGGCCTCCAATGCCGAACTGCTTGAACCAACCCAATGAGCTCCCTTTCATAAGCAGCAAGGCGAGGATGGCGTGGTGCTATCGGCCGACTAAAAAACGCCACTGGTCCAGCGCCTTGATGCAGGATGGCACCAAACCATGCACTCGACGCGTCACACTCGATGATGAAGGGCTGCGCGAAATCTGGAAGTTGCAGTGTTGGGGCAGACGTGATAGTGTGTTGGAGTGCCCGGAATGCGCGCTCCGCATCATCGGACCAAGCGAACGCTGCCTTCCTGAGGAGGCATGTTGTCACGCCCTGAAGTTATTCTCCCTAGCCAAAATTTAA
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| Protein seq | MYMTAGWAQFIEATGLQVQEPAVFRVLSTSKMHFIIFAKDGYLRCPVPDKPRDSEPTRQSFRTSSPQGKATTITSPIQCCIKGKLKHDGTSTSASNNRRTISEMCFCTKDIRLSAEVKNYIKDIAPFLQPSDKFYVTAINATFMKEGRVMHCAQAARQWRAPASSAGTTNGQPDVWPPMPNCLNQPNELPFISSKARMAWCYRPTKKRHWSSALMQDGTKPCTRRVTLDDEGLREIWKLQCWGRRDSVLECPECALRIIGPSERCLPEEACCHALKLFSLAKI |
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| Function | Putative B3 domain-containing protein LOC_Os07g12820 [UniProtKB/Swiss-Prot:Q84YL3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g35930 | LOC_Os01g35930.1 | Chr01 | 19884254 | 19886352 | + | MSU_osa1r7 | ||
| CDS seq | ATGTACATGACAGCAGGATGGGCCCAGTTTATAGAAGCAACTGGTCTGCAGGTTCAAGAGCCCGCCGTTTTCAGGGTTTTATCAACCTCGAAGATGCATTTCATCATATTTGCAAAGGACGGTTATCTTAGATGCCCAGTTCCAGACAAACCCAGAGACTCTGAACCGACCAGACAATCGTTTCGCACATCAAGCCCACAAGGGAAAGCCACTACAATTACTTCGCCTATCCAATGCTGCATCAAAGGGAAGCTAAAACATGATGGCACATCCACTTCTGCAAGCAACAACAGGCGCACTATCAGCGAAATGTGTTTCTGCACCAAGGACATCAGGTTATCAGCTGAAGTCAAGAACTACATCAAAGATATTGCGCCATTCCTCCAGCCCTCAGACAAATTTTATGTGACTGCCATAAATGCAACATTCATGAAGGAAGGGAGAGTGATGCATTGTGCACAGGCGGCGCGCCAATGGCGCGCCCCAGCATCTAGTGCAGGTACCACAAATGGGCAACCAGACGTATGGCCTCCAATGCCGAACTGCTTGAACCAACCCAATGAGCTCCCTTTCATAAGCAGCAAGGCGAGGATGGCGTGGTGCTATCGGCCGACTAAAAAACGCCACTGGTCCAGCGCCTTGATGCAGGATGGCACCAAACCATGCACTCGACGCGTCACACTCGATGATGAAGGGCTGCGCGAAATCTGGAAGTTGCAGTGTTGGGGCAGACGTGATAGTGTGTTGGAGTGCCCGGAATGCGCGCTCCGCATCATCGGACCAAGCGAACGCTGCCTTCCTGAGGAGGCATGTTGTCACGCCCTGAAGTTATTCTCCCTAGCCAAAATTTAA
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| Protein seq | MYMTAGWAQFIEATGLQVQEPAVFRVLSTSKMHFIIFAKDGYLRCPVPDKPRDSEPTRQSFRTSSPQGKATTITSPIQCCIKGKLKHDGTSTSASNNRRTISEMCFCTKDIRLSAEVKNYIKDIAPFLQPSDKFYVTAINATFMKEGRVMHCAQAARQWRAPASSAGTTNGQPDVWPPMPNCLNQPNELPFISSKARMAWCYRPTKKRHWSSALMQDGTKPCTRRVTLDDEGLREIWKLQCWGRRDSVLECPECALRIIGPSERCLPEEACCHALKLFSLAKI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.183195 | 0.998598 | 0.932590 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0541000 | RBH | 4.642141 | 2.897840 | 3.125316 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0541000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020530 | RBH | 1.835649 | 4.583171 | 18.625303 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020140 | RBH | 1.600250 | 9.037033 | 17.338793 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020470 | RBH | 1.836420 | 1.150985 | 22.459005 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019850 | RBH | 0.441194 | 0.520115 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0019750 | RBH | 12.548853 | 33.266109 | 52.790546 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0338100 | RBH | 6.9005695 | 44.381212 | 35.4173785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0314300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019760 | RBH | 0.810785 | 1.389047 | 2.015940 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0019660 | RBH | 0.601680 | 12.470798 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
