Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0103500 | OGI:04000640 | 10/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:240549-243305 | ||||||||
| Gene Symbol | YK28, SDRLK-21, RLCK132, OsRLCK132 | ||||||||||
| DNA seq | ACCGTCAACAAAAAACACATTTCTCACTGTGCATCGACAACCGTTGCTTACAAAAGTCTGTCATTAAAGAAAAAAAAATGTAAATACAAGAGTAGCATTATACAGTACATTTTAGCAATTAGAGGATTTTGAATTGTTTTTACATCTCAGCTACATTAGAAGATCTCGTTATAGCTGCAAGTAGTCTTGGCATAGGGGGCATATCAAACTCCTGTAGACCTTCAAGAACCAGGACCACTTCACCCATTGTCGGCCGATCGAACTCATTATCTTGAATGCACCAACAAGCAACTTTGCAAACCCTTTCAGCCTCTTCTAAATTGAAGTCGCCACTCAAACGTGGATCCACCAAACTCTGCACATCTCCCTCATGAAGCTTGCTGATGGCTTGCACAGGGAAGTAAGCAGCATGATGACTGTTGCTACTGTGTACATTAGGTAAACTTCTCATTCCTGATATGATCTCTAGCAACACCATACCATAGCTGTAAACATCAACTTTTGGTGTAATTGCGACACCACTAATCCACTCCGGGGCAAGATATCCAACTGTTCCTCTAAATGTAGTCAGAACTCTGCTAAAATCCCTTCCTACAAATACTGCCATCCCAAAATCTGCAATTTTAGGAGTAAATGATTCGTCGAGAAGTATGTTTTGTGGCTTAATATCACAGTGTATGATGCATTCGTGGCAACTCTGATGCAAGTAGGAAAGTCCTCTAGCAACTCCTATGGCTATTTGATACCTCGTGCTCCACGTCAGTATAGTAGCATTGCTCTGAAACAGATGGGTATCAAGAGAACCGTTTAACATGTGTTCATAAACAAGTAGCCTCTTGTCACCTTGGCAGCAGAAACCAATCAACTTGACTAGGTTGATATGTTGGATCAATCCGATTGAGCTCACCTCAGCCCTGAACTGCTTCTCGCCTTGACGGGCACCATCAAGCCTTTTCACTGCTACAACAGTCAAGTCCCTCAACACTCCCTTAAACACGGAGCCGAAACCTCCTTCTCCCAACTTCTCTGAGAAATTTTTAGTAGCATGGTCTAAATCACTATATCTGAAGGCTATAATTCCACTACCACCTTGGCTTCTGTGTAATGGCACACCACACCACTTGAATCTATTCCTCCAAACCATTACCAACACCATGAGCATTATTAGTAACACAAGAATAATAATGCTTATGGTTGTAACAACTCCAACAATTGGTTTTCTTTTGTTTTTGCTCAAACTTTGCAAATCTTTGGCTGCAAGGCGGAGGTAAAGAACATCATCGAAATGATTTTCAATGCCATCATTCTGATTTACACTAAACAAATCCCCATGCCAGACAGAGCATATGTTGTTCTGATAGGAGTAAGCAGTGCATGAGCAGGAACTGAGACAGGCTTGTGCACATTTGCTCTGAGTGGTGGCATCTTGTATGCTTTCAGAGTCATAGGGCAATTTAACATGAGCTATAGGGTGGAACATGTCTGCTGAACTTGTCCTGTTACCGCTAATAGTGCAATCTAATGGAGTATTTCTGGAGCATCCTCCTGTCCGATCACCAAGGTCCCAATCCTGAGACGACTTTCGAGTAAAACTCTCCATACATTCACATACTGGATTTGAATTGCCGTTGCAGATGGTAAAAGGTCCACATGTAGCAAATGGGTTGCAGGGATCAGCAGGCTGGGCATATATGATTTGCCAAGACTGGTTAGCTTCTGACCATACATTGAGCATGATCTGACCAGACATGTCCAGTGAGAGGAACGAAGAAGGCGATTCGTTGGATAAAGTGTACATGTAGTACTCCTCTTGGCTGTTATCAACATATGTAGGGATGATCAAACCTCTCGTCCGTGGATCCATTGCTAGCAGGGATCTGAGCTCTGGTATAAGAGTTGGTGATGTTAGACCATACCAATACACTTTAGGAGGGTTGCGGAGCATGAGGATCACCCCCTTGGTACCATTAGTGTCTAGTTCAACACTGTATGAGCCAAGACCTGGATCTATCAAGCTCTTCTTTGAGATGCATTGACGGTTCAGGCCAGTGATCTTGTTCCAACCAAACTTGGCACCAGGGAGCACAACATCTGTTGGGGAGTCAAAGCTTTCCCACAACACTACATTTGTTGTGCTTTCTATCACAAGGTTTCCGGTGTTCAATAGAACGACACTCGTGTTCGTGCTGCTGGTTTCTTGTGTCCTATGACTATCGATAATAACGCGAGTGGACCAGATTATGGATTCAGTGGCATGGTTAAAGATGACAAGATTGCCATCTGATGAGAATTTGAGCTGTGTTAGATTGAGCTCAGGGATAGTGATTGGCCTCTCCCTGTTGGCAACCCATACAGTAGTAAAAACTGGGATCTTATTGAACCATATGCCAAGGTACCAGCCAGGGGAATTGGTGCTAGTATCAGATGACTTACTGGTGCCTGCGTCTGGCTGGAAGAAGCCGAGGGTGAACTTGCCGTTGTTCGAGATGAGCTTGTCACCGACGGCGAGCGCTTGGCCAGCCAGGAGAGTATCATTATTTAGATTTGCAGCAGAGCATGGAGCAAGAGGAAGCAGGGAGAAGAGGAGAAGAACAAGGCCAAGAAATGCATAGCTCTGGGGACGCATGGAGACGAGAATTGCTGGTAGCTTCCTCTGCAGTTGGAGTTGGGACAAGGAATAAGAGGAGAGCGAGTGATCTGATGGGGAATATCTACACGGCAACGACGCTGAGCATGCATGCTGGTCAAATTCAGATT
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| CDS seq | ATGCGTCCCCAGAGCTATGCATTTCTTGGCCTTGTTCTTCTCCTCTTCTCCCTGCTTCCTCTTGCTCCATGCTCTGCTGCAAATCTAAATAATGATACTCTCCTGGCTGGCCAAGCGCTCGCCGTCGGTGACAAGCTCATCTCGAACAACGGCAAGTTCACCCTCGGCTTCTTCCAGCCAGACGCAGGCACCAGTAAGTCATCTGATACTAGCACCAATTCCCCTGGCTGGTACCTTGGCATATGGTTCAATAAGATCCCAGTTTTTACTACTGTATGGGTTGCCAACAGGGAGAGGCCAATCACTATCCCTGAGCTCAATCTAACACAGCTCAAATTCTCATCAGATGGCAATCTTGTCATCTTTAACCATGCCACTGAATCCATAATCTGGTCCACTCGCGTTATTATCGATAGTCATAGGACACAAGAAACCAGCAGCACGAACACGAGTGTCGTTCTATTGAACACCGGAAACCTTGTGATAGAAAGCACAACAAATGTAGTGTTGTGGGAAAGCTTTGACTCCCCAACAGATGTTGTGCTCCCTGGTGCCAAGTTTGGTTGGAACAAGATCACTGGCCTGAACCGTCAATGCATCTCAAAGAAGAGCTTGATAGATCCAGGTCTTGGCTCATACAGTGTTGAACTAGACACTAATGGTACCAAGGGGGTGATCCTCATGCTCCGCAACCCTCCTAAAGTGTATTGGTATGGTCTAACATCACCAACTCTTATACCAGAGCTCAGATCCCTGCTAGCAATGGATCCACGGACGAGAGGTTTGATCATCCCTACATATGTTGATAACAGCCAAGAGGAGTACTACATGTACACTTTATCCAACGAATCGCCTTCTTCGTTCCTCTCACTGGACATGTCTGGTCAGATCATGCTCAATGTATGGTCAGAAGCTAACCAGTCTTGGCAAATCATATATGCCCAGCCTGCTGATCCCTGCAACCCATTTGCTACATGTGGACCTTTTACCATCTGCAACGGCAATTCAAATCCAGTATGTGAATGTATGGAGAGTTTTACTCGAAAGTCGTCTCAGGATTGGGACCTTGGTGATCGGACAGGAGGATGCTCCAGAAATACTCCATTAGATTGCACTATTAGCGGTAACAGGACAAGTTCAGCAGACATGTTCCACCCTATAGCTCATGTTAAATTGCCCTATGACTCTGAAAGCATACAAGATGCCACCACTCAGAGCAAATGTGCACAAGCCTGTCTCAGTTCCTGCTCATGCACTGCTTACTCCTATCAGAACAACATATGCTCTGTCTGGCATGGGGATTTGTTTAGTGTAAATCAGAATGATGGCATTGAAAATCATTTCGATGATGTTCTTTACCTCCGCCTTGCAGCCAAAGATTTGCAAAGTTTGAGCAAAAACAAAAGAAAACCAATTGTTGGAGTTGTTACAACCATAAGCATTATTATTCTTGTGTTACTAATAATGCTCATGGTGTTGGTAATGGTTTGGAGGAATAGATTCAAGTGGTGTGGTGTGCCATTACACAGAAGCCAAGGTGGTAGTGGAATTATAGCCTTCAGATATAGTGATTTAGACCATGCTACTAAAAATTTCTCAGAGAAGTTGGGAGAAGGAGGTTTCGGCTCCGTGTTTAAGGGAGTGTTGAGGGACTTGACTGTTGTAGCAGTGAAAAGGCTTGATGGTGCCCGTCAAGGCGAGAAGCAGTTCAGGGCTGAGGTGAGCTCAATCGGATTGATCCAACATATCAACCTAGTCAAGTTGATTGGTTTCTGCTGCCAAGGTGACAAGAGGCTACTTGTTTATGAACACATGTTAAACGGTTCTCTTGATACCCATCTGTTTCAGAGCAATGCTACTATACTGACGTGGAGCACGAGGTATCAAATAGCCATAGGAGTTGCTAGAGGACTTTCCTACTTGCATCAGAGTTGCCACGAATGCATCATACACTGTGATATTAAGCCACAAAACATACTTCTCGACGAATCATTTACTCCTAAAATTGCAGATTTTGGGATGGCAGTATTTGTAGGAAGGGATTTTAGCAGAGTTCTGACTACATTTAGAGGAACAGTTGGATATCTTGCCCCGGAGTGGATTAGTGGTGTCGCAATTACACCAAAAGTTGATGTTTACAGCTATGGTATGGTGTTGCTAGAGATCATATCAGGAATGAGAAGTTTACCTAATGTACACAGTAGCAACAGTCATCATGCTGCTTACTTCCCTGTGCAAGCCATCAGCAAGCTTCATGAGGGAGATGTGCAGAGTTTGGTGGATCCACGTTTGAGTGGCGACTTCAATTTAGAAGAGGCTGAAAGGGTTTGCAAAGTTGCTTGTTGGTGCATTCAAGATAATGAGTTCGATCGGCCGACAATGGGTGAAGTGGTCCTGGTTCTTGAAGGTCTACAGGAGTTTGATATGCCCCCTATGCCAAGACTACTTGCAGCTATAACGAGATCTTCTAATGTAGCTGAGATGTAA
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| Protein seq | MRPQSYAFLGLVLLLFSLLPLAPCSAANLNNDTLLAGQALAVGDKLISNNGKFTLGFFQPDAGTSKSSDTSTNSPGWYLGIWFNKIPVFTTVWVANRERPITIPELNLTQLKFSSDGNLVIFNHATESIIWSTRVIIDSHRTQETSSTNTSVVLLNTGNLVIESTTNVVLWESFDSPTDVVLPGAKFGWNKITGLNRQCISKKSLIDPGLGSYSVELDTNGTKGVILMLRNPPKVYWYGLTSPTLIPELRSLLAMDPRTRGLIIPTYVDNSQEEYYMYTLSNESPSSFLSLDMSGQIMLNVWSEANQSWQIIYAQPADPCNPFATCGPFTICNGNSNPVCECMESFTRKSSQDWDLGDRTGGCSRNTPLDCTISGNRTSSADMFHPIAHVKLPYDSESIQDATTQSKCAQACLSSCSCTAYSYQNNICSVWHGDLFSVNQNDGIENHFDDVLYLRLAAKDLQSLSKNKRKPIVGVVTTISIIILVLLIMLMVLVMVWRNRFKWCGVPLHRSQGGSGIIAFRYSDLDHATKNFSEKLGEGGFGSVFKGVLRDLTVVAVKRLDGARQGEKQFRAEVSSIGLIQHINLVKLIGFCCQGDKRLLVYEHMLNGSLDTHLFQSNATILTWSTRYQIAIGVARGLSYLHQSCHECIIHCDIKPQNILLDESFTPKIADFGMAVFVGRDFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSYGMVLLEIISGMRSLPNVHSSNSHHAAYFPVQAISKLHEGDVQSLVDPRLSGDFNLEEAERVCKVACWCIQDNEFDRPTMGEVVLVLEGLQEFDMPPMPRLLAAITRSSNVAEM |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0103500 | OsNip_04t0103500-01 | Chr04 | 240549 | 243305 | - | RAP2018-11-26 | ||
| CDS seq | ATGCGTCCCCAGAGCTATGCATTTCTTGGCCTTGTTCTTCTCCTCTTCTCCCTGCTTCCTCTTGCTCCATGCTCTGCTGCAAATCTAAATAATGATACTCTCCTGGCTGGCCAAGCGCTCGCCGTCGGTGACAAGCTCATCTCGAACAACGGCAAGTTCACCCTCGGCTTCTTCCAGCCAGACGCAGGCACCAGTAAGTCATCTGATACTAGCACCAATTCCCCTGGCTGGTACCTTGGCATATGGTTCAATAAGATCCCAGTTTTTACTACTGTATGGGTTGCCAACAGGGAGAGGCCAATCACTATCCCTGAGCTCAATCTAACACAGCTCAAATTCTCATCAGATGGCAATCTTGTCATCTTTAACCATGCCACTGAATCCATAATCTGGTCCACTCGCGTTATTATCGATAGTCATAGGACACAAGAAACCAGCAGCACGAACACGAGTGTCGTTCTATTGAACACCGGAAACCTTGTGATAGAAAGCACAACAAATGTAGTGTTGTGGGAAAGCTTTGACTCCCCAACAGATGTTGTGCTCCCTGGTGCCAAGTTTGGTTGGAACAAGATCACTGGCCTGAACCGTCAATGCATCTCAAAGAAGAGCTTGATAGATCCAGGTCTTGGCTCATACAGTGTTGAACTAGACACTAATGGTACCAAGGGGGTGATCCTCATGCTCCGCAACCCTCCTAAAGTGTATTGGTATGGTCTAACATCACCAACTCTTATACCAGAGCTCAGATCCCTGCTAGCAATGGATCCACGGACGAGAGGTTTGATCATCCCTACATATGTTGATAACAGCCAAGAGGAGTACTACATGTACACTTTATCCAACGAATCGCCTTCTTCGTTCCTCTCACTGGACATGTCTGGTCAGATCATGCTCAATGTATGGTCAGAAGCTAACCAGTCTTGGCAAATCATATATGCCCAGCCTGCTGATCCCTGCAACCCATTTGCTACATGTGGACCTTTTACCATCTGCAACGGCAATTCAAATCCAGTATGTGAATGTATGGAGAGTTTTACTCGAAAGTCGTCTCAGGATTGGGACCTTGGTGATCGGACAGGAGGATGCTCCAGAAATACTCCATTAGATTGCACTATTAGCGGTAACAGGACAAGTTCAGCAGACATGTTCCACCCTATAGCTCATGTTAAATTGCCCTATGACTCTGAAAGCATACAAGATGCCACCACTCAGAGCAAATGTGCACAAGCCTGTCTCAGTTCCTGCTCATGCACTGCTTACTCCTATCAGAACAACATATGCTCTGTCTGGCATGGGGATTTGTTTAGTGTAAATCAGAATGATGGCATTGAAAATCATTTCGATGATGTTCTTTACCTCCGCCTTGCAGCCAAAGATTTGCAAAGTTTGAGCAAAAACAAAAGAAAACCAATTGTTGGAGTTGTTACAACCATAAGCATTATTATTCTTGTGTTACTAATAATGCTCATGGTGTTGGTAATGGTTTGGAGGAATAGATTCAAGTGGTGTGGTGTGCCATTACACAGAAGCCAAGGTGGTAGTGGAATTATAGCCTTCAGATATAGTGATTTAGACCATGCTACTAAAAATTTCTCAGAGAAGTTGGGAGAAGGAGGTTTCGGCTCCGTGTTTAAGGGAGTGTTGAGGGACTTGACTGTTGTAGCAGTGAAAAGGCTTGATGGTGCCCGTCAAGGCGAGAAGCAGTTCAGGGCTGAGGTGAGCTCAATCGGATTGATCCAACATATCAACCTAGTCAAGTTGATTGGTTTCTGCTGCCAAGGTGACAAGAGGCTACTTGTTTATGAACACATGTTAAACGGTTCTCTTGATACCCATCTGTTTCAGAGCAATGCTACTATACTGACGTGGAGCACGAGGTATCAAATAGCCATAGGAGTTGCTAGAGGACTTTCCTACTTGCATCAGAGTTGCCACGAATGCATCATACACTGTGATATTAAGCCACAAAACATACTTCTCGACGAATCATTTACTCCTAAAATTGCAGATTTTGGGATGGCAGTATTTGTAGGAAGGGATTTTAGCAGAGTTCTGACTACATTTAGAGGAACAGTTGGATATCTTGCCCCGGAGTGGATTAGTGGTGTCGCAATTACACCAAAAGTTGATGTTTACAGCTATGGTATGGTGTTGCTAGAGATCATATCAGGAATGAGAAGTTTACCTAATGTACACAGTAGCAACAGTCATCATGCTGCTTACTTCCCTGTGCAAGCCATCAGCAAGCTTCATGAGGGAGATGTGCAGAGTTTGGTGGATCCACGTTTGAGTGGCGACTTCAATTTAGAAGAGGCTGAAAGGGTTTGCAAAGTTGCTTGTTGGTGCATTCAAGATAATGAGTTCGATCGGCCGACAATGGGTGAAGTGGTCCTGGTTCTTGAAGGTCTACAGGAGTTTGATATGCCCCCTATGCCAAGACTACTTGCAGCTATAACGAGATCTTCTAATGTAGCTGAGATGTAA
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| Protein seq | MRPQSYAFLGLVLLLFSLLPLAPCSAANLNNDTLLAGQALAVGDKLISNNGKFTLGFFQPDAGTSKSSDTSTNSPGWYLGIWFNKIPVFTTVWVANRERPITIPELNLTQLKFSSDGNLVIFNHATESIIWSTRVIIDSHRTQETSSTNTSVVLLNTGNLVIESTTNVVLWESFDSPTDVVLPGAKFGWNKITGLNRQCISKKSLIDPGLGSYSVELDTNGTKGVILMLRNPPKVYWYGLTSPTLIPELRSLLAMDPRTRGLIIPTYVDNSQEEYYMYTLSNESPSSFLSLDMSGQIMLNVWSEANQSWQIIYAQPADPCNPFATCGPFTICNGNSNPVCECMESFTRKSSQDWDLGDRTGGCSRNTPLDCTISGNRTSSADMFHPIAHVKLPYDSESIQDATTQSKCAQACLSSCSCTAYSYQNNICSVWHGDLFSVNQNDGIENHFDDVLYLRLAAKDLQSLSKNKRKPIVGVVTTISIIILVLLIMLMVLVMVWRNRFKWCGVPLHRSQGGSGIIAFRYSDLDHATKNFSEKLGEGGFGSVFKGVLRDLTVVAVKRLDGARQGEKQFRAEVSSIGLIQHINLVKLIGFCCQGDKRLLVYEHMLNGSLDTHLFQSNATILTWSTRYQIAIGVARGLSYLHQSCHECIIHCDIKPQNILLDESFTPKIADFGMAVFVGRDFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSYGMVLLEIISGMRSLPNVHSSNSHHAAYFPVQAISKLHEGDVQSLVDPRLSGDFNLEEAERVCKVACWCIQDNEFDRPTMGEVVLVLEGLQEFDMPPMPRLLAAITRSSNVAEM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.882508 | 1.019407 | 1.186820 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g01310 | RBH | 1.272589 | 0.685590 | 0.305400 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0103500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000150 | SBH | 0.211760 | 2.395765 | 3.749433 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000160 | SBH | 0.096671 | 2.853943 | 1.208340 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000150 | RBH | 0.808031 | 5.019080 | 3.806088 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000170 | SBH | 0.069744 | 0.323755 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000140 | SBH | 0.605598 | 3.359040 | 4.364083 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0003700 | RBH | 0.8073645 | 24.093412 | 1.8771285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000160 | SBH | 0.381690 | 0.585906 | 0.808173 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0004300 | RBH | 1.511669 | 18.5250015 | 2.9534285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000150 | SBH | 0.390810 | 0.135176 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000170 | SBH | 0.035487 | 3.797025 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000170 | RBH | 0.766307 | 8.266186 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000140 | SBH | 1.239633 | 0.798403 | 0.959144 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000150 | SBH | 0.0 | 4.059380 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000180 | SBH | 0.673993 | 2.495537 | 0.991814 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000120 | RBH | 0.342205 | 15.181497 | 3.611933 |
