Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0728500 | OGI:02085780 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:30316143-30319807 | ||||||||
| Gene Symbol | OsSERL3 | ||||||||||
| DNA seq | TATTTGATGCATTTTCAAGCTTTGCATCAATGCACAAAAATGTCATTGCCAAGTCTTTATAATCCAATGACAACAGTTTCTTTTTTAACTAACACTAGCTAAGGCAAAAGGTACAAGGGAGGAAAAAAGCATAAACAAAATGTTACATCTTGAAAAATATTGCTCTGCAAACTTATTCTACCAATAGTTACAGAATCTGTAAAAGTAGAAATATCCTATGCCTAGGAAGTGCTCTTCTTTTAATCTTTGTACAGCTGATCTGATACCTGCTTCGATTTGTGATTTTGCATTGGCATGCAGTTGCTTGCTTTAAATTTTTTTTTTTGGCTATTTTTCCATTGTACAGTGGTGTCTCTTGCTGTACAGATCCTGCTGCAAACAACTAATGATGGTTTGCCTTCCACTATTTGTTATCGTGTCATCTCGGCCCAGAGAGCTCGACTGCCTGGACCAGCAATGACGAGTCATCCGTCAGGTCAGAGTAGCAGCGACCGAAGGTGAACTCAGGCACTTTGAACTTGTGTGAGTCAGCGCGCTGGGATGCTTCCCACCGCTCTGCCAGTCCATCTCCCTCCAGCATCCTGACCACCTCTGACATCCTGGGCCTGTGACCAGGGAGATATTGGGTGCACAGCAGTGCCACCTGCACCATCTCCTCCAGCTCGACACGGTCGTAGTTGCTTCTCAGGCCCTTGTCGACAAGCACGTCGAGCTTCTTCTCCTGGTGCATCTTCTTCACCTGAACACAAGCCAATGTCAAGGCAAGAGACAAGATTTGGTAGACAGATATGCTAGCCTTATTCTAGCGATAATTTTCCCATGCTCCAAACTCTTTGGAAATGGTAATGAACTTACCCAGTCCAGCATGGCTCCCTTCTGATTTGATGACTTCCCAAATTCAAGTGCAGTTTGACCAGTGATCAATTCAAGCAGCAGAATTCCAAAACCAAAGACGTCGGTCTTCTCAGATGACTGGCCGGTGGAGAGGTATTCCGGGGCAATGTGCCCAACGGTACCCCTGACAGCTGTGGTGACATGTGAGTCACGATGATCTAGGAGCTTGGCAAGCCCAAAATCTCCAACAATGGCTTCACAGTAGTCATCAAGCAATATGTTGGCTGCCTTTACGTCCCTATGAATAATCTTGGGGTCACACTGCTCGTGCAGGTACAGTAGGCCTCTTGCTGCACCGAGTGCTATCCTCTGTCTGGTGATCCAGTCCAATGGTGGCTTCCCTATAATTAGTCACGTGAGAACAAAATTGGTTATATGGGAATCATATTCTTTTTTAAAAAAGTTTTGGCCAATGAAAACGATATAGAAATGAAAGGATTAAATAAGAAGCTCTCTTGTCAAGAACTGAGGAACAATTCATTACTATTTCATTTAGCTATTTTATGATGGAATTACTGTTTGATTTATAATTTTGGAATTCATGAACCATCTTGAAATCATGATGTTCTTACCTTTCAGACGCAATGCGACACTCCCATTTGACATGTATGGATATACCAGAAGCCTCTCAGTAGCAGTCATGCAGAACCCATAAAGCCTGAGGAGGTTCCGGTGAAGCGCCAAGCTGATCATCTCAACTTCAGTCTGAAACTGTGCCTGCCCGCCTGCAGCATTACCATCTTTCAGCCTCTTGACAGCTACAACAGTTCCATCTGGTAGCTTTCCCCGGTAAACGTTTCCAAAGCCGCCTTTTCCTAAGATGTTCTTATTGCTGAAGTTCTCTGTTGCAACCTGAAGCTCTCTGAACTGAAACCTCTTCACATTTCCTAGGTTGACATTCTCTGTGTGTTGCTCTGCAATAGCCAATGCGTTACAATGAAAACAACCATCGCATGCCAGTATGCCCCCAAGTTTGACGAGCATTGAGGCATTATGGATAGTAGTTTGGCTTTTTGCTTACCATCAACATCAAAAAGAATTTGATGGTTTCGCCTATGCCTCCACCAGAACAGCAATCCCATAACAGGGATAAGGAAGCTGATGCAGCCAATTGTAGAACCAAATGCAATTGCAACCTTGTGGCTTTTAGATTTTGCTGGCATCAGAGTACCTATTGATAGAAGGCCATTAGAGCAATTGCTATCTACATGGCCAATGCAAATTTCAATTTGCAAGGTGATTTATGCATACCCTGTGTATTATTCAGGCTGTAGGACATCGGCATTGGTAAAGTTCCATAACAATCATGTTCCGTACCCGCAGCACAGATCAACGGATTCCCCACTATACTGCAACAGATAAGCAAAATTTTGAGGCAAATTTTGTTTTCCTTGGAGGTAGTTTACAACAAATTTAACCTGTAGCTGTTTTTTGAGGTGTTAGACTGCATACTTACTTGAACGTTCTTGCCAAAGAACCAGGTACTGGACCACTCAGATTATTATACGAAAGGTCCCTGAAAAATGCAAGTCCACAATAAGAACCGGCACAGCGCACATACAACATAGGACAGATATCACCAAACAGAAAAACAAGCAAAGGATACTCACAGGAAAACAAGCTGTGATAAATTAGCTGATGATGAAGGGTATGCACCAGACAGGGTGTTGTTGTTGAGCCTCCTGGTAGCAGCAAAATGGAAAAGAATAAGAAGAGTTACACCAATTGTGACTTCTGAGAGGACAAGTTACAAATGGGGAATCTCATTCAAGGCTACCAGAACAGAACAGAACTGCACTGCACTTACAAGTACTGGAGGCTTTCGAGGTGGCCTACTGAGTTTGGGATTCCACCAGAGAAGTGGTTACTGGAGAGATCAAGTGTTTTGAGTTTTGTTAGCCTGCCAATCTCTTCTGGAATTGGACCATTGATGTTGTTGTTCTGCAGAAGACTACAAACAAGACATATTAGGATCTCTTCCCACTCAAGAAACATAATGGAAGCAGAATCTACAGCGATGATCGCAAAGGCTAATCACGACAGGTAAAACTTACACTATCTCAAGATTGGTCAAGTTGCCTATGCTTGCGGAGAGCAGGCCAGAAAGATTCTGGCTTGGAGCCTCCCTATCAAATTCAGACAAGCAAACAAATAATGGTAGGTCAGCAAGTCAAAGGAAACTTGTCAAGATATGTTGGGGTTGAGTAAAAATATGATACTCTAGATGGCTTGCTTACAGGCCAGTGACAAGGTTCTCAGGTGAGCAAGTGACCATGGTCCAGCTGCAAGGATCCACGGAGTCTTGGTCCCAGTTCTTGAGCACACCGTGAGGATCCTTGAGGGAAGTCTTGATCATCATGAGAGCTTGCACTGGAGATGAGATTATGACACGCACAAGCACAAATCAGTGCTAGAGAAACAACTAAAGAAGAACCACGGGAGAGTTCTTCATATGGGAGTACAAAACAAGGTAGCAAGCACCAATGCAGCCAAAAAACAAACGAAAACCAAAAAAAGAGTTCTTGATTTGAGGAAGGAATATTAACCTTCATAGTTTACACCCTTGGGAGAGAGGAGGGCACTTGCAAGCCTGCAAGGGAAGGAGAAGGAGGCAAGCAACACCAGTGAGTAAACCGCAAGAGCCACCTCCATTGCCATGGAAGGGCGGAAGCAGGAGAGGAAGGGCTAATCGCTTGTGGTGGTGTGTTCAAACATGGAGGAAGGGTGAGGCCAAGGAAAAGAAGCATGCAGCCTTCTCTTCTCACAATTGC
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| CDS seq | ATGGCAATGGAGGTGGCTCTTGCGGTTTACTCACTGGTGTTGCTTGCCTCCTTCTCCTTCCCTTGCAGGCTTGCAAGTGCCCTCCTCTCTCCCAAGGGTGTAAACTATGAAGTGCAAGCTCTCATGATGATCAAGACTTCCCTCAAGGATCCTCACGGTGTGCTCAAGAACTGGGACCAAGACTCCGTGGATCCTTGCAGCTGGACCATGGTCACTTGCTCACCTGAGAACCTTGTCACTGGCCTGGAGGCTCCAAGCCAGAATCTTTCTGGCCTGCTCTCCGCAAGCATAGGCAACTTGACCAATCTTGAGATAGTTCTTCTGCAGAACAACAACATCAATGGTCCAATTCCAGAAGAGATTGGCAGGCTAACAAAACTCAAAACACTTGATCTCTCCAGTAACCACTTCTCTGGTGGAATCCCAAACTCAGTAGGCCACCTCGAAAGCCTCCAGTACTTGAGGCTCAACAACAACACCCTGTCTGGTGCATACCCTTCATCATCAGCTAATTTATCACAGCTTGTTTTCCTGGACCTTTCGTATAATAATCTGAGTGGTCCAGTACCTGGTTCTTTGGCAAGAACGTTCAATATAGTGGGGAATCCGTTGATCTGTGCTGCGGGTACGGAACATGATTGTTATGGAACTTTACCAATGCCGATGTCCTACAGCCTGAATAATACACAGGGTACTCTGATGCCAGCAAAATCTAAAAGCCACAAGGTTGCAATTGCATTTGGTTCTACAATTGGCTGCATCAGCTTCCTTATCCCTGTTATGGGATTGCTGTTCTGGTGGAGGCATAGGCGAAACCATCAAATTCTTTTTGATGTTGATGGTAAGCAAAAAGCCAAACTACTATCCATAATGCCTCAATGCTCGTCAAACTTGGGGGCATACTGGCATGCGATGGTTGTTTTCATTGTAACGCATTGGCTATTGCAGAGCAACACACAGAGAATGTCAACCTAG
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| Protein seq | MAMEVALAVYSLVLLASFSFPCRLASALLSPKGVNYEVQALMMIKTSLKDPHGVLKNWDQDSVDPCSWTMVTCSPENLVTGLEAPSQNLSGLLSASIGNLTNLEIVLLQNNNINGPIPEEIGRLTKLKTLDLSSNHFSGGIPNSVGHLESLQYLRLNNNTLSGAYPSSSANLSQLVFLDLSYNNLSGPVPGSLARTFNIVGNPLICAAGTEHDCYGTLPMPMSYSLNNTQGTLMPAKSKSHKVAIAFGSTIGCISFLIPVMGLLFWWRHRRNHQILFDVDGKQKAKLLSIMPQCSSNLGAYWHAMVVFIVTHWLLQSNTQRMST |
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| Function | LRR receptor kinase SERL2 [UniProtKB/Swiss-Prot:Q9FP13] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0728500 | OsNip_02t0728500-01 | Chr02 | 30316143 | 30319805 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCAATGGAGGTGGCTCTTGCGGTTTACTCACTGGTGTTGCTTGCCTCCTTCTCCTTCCCTTGCAGGCTTGCAAGTGCCCTCCTCTCTCCCAAGGGTGTAAACTATGAAGTGCAAGCTCTCATGATGATCAAGACTTCCCTCAAGGATCCTCACGGTGTGCTCAAGAACTGGGACCAAGACTCCGTGGATCCTTGCAGCTGGACCATGGTCACTTGCTCACCTGAGAACCTTGTCACTGGCCTGGAGGCTCCAAGCCAGAATCTTTCTGGCCTGCTCTCCGCAAGCATAGGCAACTTGACCAATCTTGAGATAGTTCTTCTGCAGAACAACAACATCAATGGTCCAATTCCAGAAGAGATTGGCAGGCTAACAAAACTCAAAACACTTGATCTCTCCAGTAACCACTTCTCTGGTGGAATCCCAAACTCAGTAGGCCACCTCGAAAGCCTCCAGTACTTGAGGCTCAACAACAACACCCTGTCTGGTGCATACCCTTCATCATCAGCTAATTTATCACAGCTTGTTTTCCTGGACCTTTCGTATAATAATCTGAGTGGTCCAGTACCTGGTTCTTTGGCAAGAACGTTCAATATAGTGGGGAATCCGTTGATCTGTGCTGCGGGTACGGAACATGATTGTTATGGAACTTTACCAATGCCGATGTCCTACAGCCTGAATAATACACAGGGTACTCTGATGCCAGCAAAATCTAAAAGCCACAAGGTTGCAATTGCATTTGGTTCTACAATTGGCTGCATCAGCTTCCTTATCCCTGTTATGGGATTGCTGTTCTGGTGGAGGCATAGGCGAAACCATCAAATTCTTTTTGATGTTGATGGTAAGCAAAAAGCCAAACTACTATCCATAATGCCTCAATGCTCGTCAAACTTGGGGGCATACTGGCATGCGATGGTTGTTTTCATTGTAACGCATTGGCTATTGCAGAGCAACACACAGAGAATGTCAACCTAG
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| Protein seq | MAMEVALAVYSLVLLASFSFPCRLASALLSPKGVNYEVQALMMIKTSLKDPHGVLKNWDQDSVDPCSWTMVTCSPENLVTGLEAPSQNLSGLLSASIGNLTNLEIVLLQNNNINGPIPEEIGRLTKLKTLDLSSNHFSGGIPNSVGHLESLQYLRLNNNTLSGAYPSSSANLSQLVFLDLSYNNLSGPVPGSLARTFNIVGNPLICAAGTEHDCYGTLPMPMSYSLNNTQGTLMPAKSKSHKVAIAFGSTIGCISFLIPVMGLLFWWRHRRNHQILFDVDGKQKAKLLSIMPQCSSNLGAYWHAMVVFIVTHWLLQSNTQRMST
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0728500 | OsNip_02t0728500-02 | Chr02 | 30316166 | 30319807 | - | IsoSeq | ||
| CDS seq | GCAATTGTGAGAAGAGAAGGCTGCATGCTTCTTTTCCTTGGCCTCACCCTTCCTCCATGTTTGAACACACCACCACAAGCGATTAGCCCTTCCTCTCCTGCTTCCGCCCTTCCATGGCAATGGAGGTGGCTCTTGCGGTTTACTCACTGGTGTTGCTTGCCTCCTTCTCCTTCCCTTGCAGGCTTGCAAGTGCCCTCCTCTCTCCCAAGG
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| Protein seq | AIVRREGCMLLFLGLTLPPCLNTPPQAISPSSPASALPWQWRWLLRFTHWCCLPPSPSLAGLQVPSSLPR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr02 | 30317609 | 30318207 | - | OsNip_02t0728500-01 | OsNip_02t0728500-02,OsNip_02t0728500-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.241609 | 0.066578 | 1.612698 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0274300 | RBH | 3.931244 | 1.311950 | 2.740619 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g49600 | RBH | 0.155260 | 0.060706 | 0.299604 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0728500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004310 | SBH | 0.053326 | 2.659473 | 0.663938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0032290 | RBH | 0.0 | 1.992350 | 2.091331 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004360 | SBH | 0.038443 | 0.407024 | 0.900679 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020740 | SBH | 0.027518 | 0.028389 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004280 | SBH | 1.714308 | 1.291915 | 1.010436 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0495300 | RBH | 1.5231245 | 16.9894445 | 4.3244735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004280 | SBH | 0.048594 | 0.017924 | 0.096358 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0524100 | RBH | 1.7523055 | 9.600512 | 26.103846 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004550 | SBH | 0.022579 | 0.127643 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0031710 | RBH | 0.0 | 3.240304 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0032070 | RBH | 0.000000 | 38.236526 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0031920 | RBH | 0.0 | 0.859417 | 1.389385 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004310 | SBH | 0.850914 | 0.737580 | 0.524094 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004260 | SBH | 0.000000 | 0.353235 | 0.384476 |
