Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0552600 | OGI:02001240 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:20842399-20844674 | ||||||||
| Gene Symbol | OGG, Ogg, OsOGG | ||||||||||
| DNA seq | TCATGTTTTGACATTGTTTCCACTACGCTTCCTTTTAGTAGGTTTCGTGGAAGTGTTTGTAGTTTCAGCAACCATGAGTTTTTGAGCAGACAGCTGGCCAATAAAGAGAACATTCTGTGCCCAACCAGCATAGTTCCCAAATTTAGCAACAAATGCATCGGCAACAGCAACACTAAGTTTTGGGGTTAAGCTCTTGCCAGCTAGCTCCGGCATCAGATATTGTGTAGCAACCTGCATTAAATCCATATAGGAAGGGCTTAAAAACAAAATACAATTGTTTGTAGGTCATATAAAACTCATGTGAAAAAACCTCCTTCACAAGACTTCCCATCAACTTTAATTGTTTTTATGTCTAGAGAGTGAAGTCAATTGTGAATACATTGAATACTATTTCCCATTCAAATGATGAAAGTCCCACCCTCACCCAACTAAAAAAAATGAAAAAGGGCAAACCTTGTTATGCAGAGCTTATGGTTCAACAAAAATTGGAAGTAAATATGATCAGGGTAGAATGTGCAAAACAGGTTCCCATTCAAATAGTAAGAATGTGTAAAATGATAGTGAGGGAACTGACATGGATGTGAATTAATTAATTTTATCAACAATTTTTCATGGAAAAGTCTATGCATACTAAAATTTTCTTACAAAATTCTTACAAACTCTAATGTGGTAAGCCGTGAGTAAATCTAGATTTGTTGCAACTTCCATCTAGTTAAATCAAACGGTTGAGACATTTGTTAGTATAAGAGTTTTGTAAGAAAATTTTATTATGTGTAGCAGTACTCATTTTCATACCTTCCAGACATGTGTGTCAACAGGAATAGCATGGTTCTGATCGAGTGAGAACAAAGCAACACAGGCTGCAACTTTTGGCCCAACACCTGGAAGGGTGCAAAGAGCCTCAATCACCTCCGGGAGTTCCCTTGTACGCAATGAGGCAAGCCATTTCTCGCCTCCACCAGGCTTGGCCTGTAATATTTTAGCAGTGCCGACGATGTACTTTGCCCTGTTCATTTATTAGAACACAGCATTTGCTCAAATCAGTGTGCTATTGACTAGTATCTCAAATCAAATGTAGTATACATAATATGATAGAACTGAGTTATGATTCAAGCAATCCAAACAAGTGTTACGCCTGATTCAAAATGTTATTTCCCCAAAGCTGAAACCTCACCACACAAATGTGAAGTTGAGATTCTCTACATATTCATCGTATAAACAGTAATGGTAGGATCATCGTTTTATCGTCTACGAGCTCTGCTATTATCAGCACATTGATATAGCACGCGAATTTAGTCACCCATTATGTCTGAATTATAATTAACACAAGATCTAGATCCTACCAATGCCAAATGGGTTAATTGGAAAATACAAAGTAAGCATCAAAATGAACCTATAGATGCTTCAACCAATACTACTCCAACATAAGTAACAATGACTATAGATGAAAATCCTTTGTGAACTGACCTGTACCCGAACCCGGCATCCCGGAGCTCTTGCTCCGACACGCGCGCGAGCCGCTCGATCGTGGGGAATTGGTGGAATTGGTATCCTCCAACCTCGCCGAGCCGCTCCCCGTAGCCGGCCAGCGCCCACACCATCTTCTCGATCCGCGCGATGTTGTTGTTGGAGGAGCAGAGGAACTGGAACACGCACTCGACGGGGTCCTGCCTGAGCACCCGGGCGCCGCCGCCCCCGAGCCGCGCGGAGACCTCCGCGAACCGCGCGTCCGCGGCGGCGAACCGGCGCCAGAGGTCGGCGAGCGGCACGGCGGCGTTGAGGTAGTCGGAGAGCGCGGCGCGGGCCGCCGCGGGGACGGAGGAGGAGGAGGAGCCGCCGTTGTTGTGGAGGAGGAAGGCGAGGCGGCCGTCGGAGGACGGGAGGTGGGAGAGGGAGACGAGGTGAGGCCCCACGGCGCCGGTGAAGCGGAGCGGGGAGAGAGACGTGCGGCGCCACAGGAAGGTCTGCCCCGTGGGGAGGGTGAGCGGGAGGGACAGGTCGGCGGCGGAGAGCGGCAGGGGGTGCCACTCTCCGTCCTCCTCCTCGACGGCGGCGGCGGAGACGAGGGGGAGGCGGCGGCGGGCGGGAGGAGGGCGGCGGTCGGCGGCCTCGGATTTGGGGGTGCCCACGGGCGGGGTTGGCGGTGGTGTTGCGGTGGTGGAAGAGAGGAGGGGAGGGGAGGGTGGGAGCGGCGGCCGGACTCGGCGGCGGCGGCGAGGTGGCATCCCGGCGGCGGCGGCGGCGGCAACGGTCGGAAGGGGAGGATGACACCCCAT
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| CDS seq | ATGGGGTGTCATCCTCCCCTTCCGACCGTTGCCGCCGCCGCCGCCGCCGGGATGCCACCTCGCCGCCGCCGCCGAGTCCGGCCGCCGCTCCCACCCTCCCCTCCCCTCCTCTCTTCCACCACCGCAACACCACCGCCAACCCCGCCCGTGGGCACCCCCAAATCCGAGGCCGCCGACCGCCGCCCTCCTCCCGCCCGCCGCCGCCTCCCCCTCGTCTCCGCCGCCGCCGTCGAGGAGGAGGACGGAGAGTGGCACCCCCTGCCGCTCTCCGCCGCCGACCTGTCCCTCCCGCTCACCCTCCCCACGGGGCAGACCTTCCTGTGGCGCCGCACGTCTCTCTCCCCGCTCCGCTTCACCGGCGCCGTGGGGCCTCACCTCGTCTCCCTCTCCCACCTCCCGTCCTCCGACGGCCGCCTCGCCTTCCTCCTCCACAACAACGGCGGCTCCTCCTCCTCCTCCGTCCCCGCGGCGGCCCGCGCCGCGCTCTCCGACTACCTCAACGCCGCCGTGCCGCTCGCCGACCTCTGGCGCCGGTTCGCCGCCGCGGACGCGCGGTTCGCGGAGGTCTCCGCGCGGCTCGGGGGCGGCGGCGCCCGGGTGCTCAGGCAGGACCCCGTCGAGTGCGTGTTCCAGTTCCTCTGCTCCTCCAACAACAACATCGCGCGGATCGAGAAGATGGTGTGGGCGCTGGCCGGCTACGGGGAGCGGCTCGGCGAGGTTGGAGGATACCAATTCCACCAATTCCCCACGATCGAGCGGCTCGCGCGCGTGTCGGAGCAAGAGCTCCGGGATGCCGGGTTCGGGTACAGGGCAAAGTACATCGTCGGCACTGCTAAAATATTACAGGCCAAGCCTGGTGGAGGCGAGAAATGGCTTGCCTCATTGCGTACAAGGGAACTCCCGGAGGTGATTGAGGCTCTTTGCACCCTTCCAGGTGTTGGGCCAAAAGTTGCAGCCTGTGTTGCTTTGTTCTCACTCGATCAGAACCATGCTATTCCTGTTGACACACATGTCTGGAAGGTTGCTACACAATATCTGATGCCGGAGCTAGCTGGCAAGAGCTTAACCCCAAAACTTAGTGTTGCTGTTGCCGATGCATTTGTTGCTAAATTTGGGAACTATGCTGGTTGGGCACAGAATGTTCTCTTTATTGGCCAGCTGTCTGCTCAAAAACTCATGGTTGCTGAAACTACAAACACTTCCACGAAACCTACTAAAAGGAAGCGTAGTGGAAACAATGTCAAAACATGA
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| Protein seq | MGCHPPLPTVAAAAAAGMPPRRRRRVRPPLPPSPPLLSSTTATPPPTPPVGTPKSEAADRRPPPARRRLPLVSAAAVEEEDGEWHPLPLSAADLSLPLTLPTGQTFLWRRTSLSPLRFTGAVGPHLVSLSHLPSSDGRLAFLLHNNGGSSSSSVPAAARAALSDYLNAAVPLADLWRRFAAADARFAEVSARLGGGGARVLRQDPVECVFQFLCSSNNNIARIEKMVWALAGYGERLGEVGGYQFHQFPTIERLARVSEQELRDAGFGYRAKYIVGTAKILQAKPGGGEKWLASLRTRELPEVIEALCTLPGVGPKVAACVALFSLDQNHAIPVDTHVWKVATQYLMPELAGKSLTPKLSVAVADAFVAKFGNYAGWAQNVLFIGQLSAQKLMVAETTNTSTKPTKRKRSGNNVKT |
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| Function | N-glycosylase/DNA lyase OGG1 [UniProtKB/Swiss-Prot:Q9FNY7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0552600 | OsNip_02t0552600-00 | Chr02 | 20842399 | 20844674 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGGTGTCATCCTCCCCTTCCGACCGTTGCCGCCGCCGCCGCCGCCGGGATGCCACCTCGCCGCCGCCGCCGAGTCCGGCCGCCGCTCCCACCCTCCCCTCCCCTCCTCTCTTCCACCACCGCAACACCACCGCCAACCCCGCCCGTGGGCACCCCCAAATCCGAGGCCGCCGACCGCCGCCCTCCTCCCGCCCGCCGCCGCCTCCCCCTCGTCTCCGCCGCCGCCGTCGAGGAGGAGGACGGAGAGTGGCACCCCCTGCCGCTCTCCGCCGCCGACCTGTCCCTCCCGCTCACCCTCCCCACGGGGCAGACCTTCCTGTGGCGCCGCACGTCTCTCTCCCCGCTCCGCTTCACCGGCGCCGTGGGGCCTCACCTCGTCTCCCTCTCCCACCTCCCGTCCTCCGACGGCCGCCTCGCCTTCCTCCTCCACAACAACGGCGGCTCCTCCTCCTCCTCCGTCCCCGCGGCGGCCCGCGCCGCGCTCTCCGACTACCTCAACGCCGCCGTGCCGCTCGCCGACCTCTGGCGCCGGTTCGCCGCCGCGGACGCGCGGTTCGCGGAGGTCTCCGCGCGGCTCGGGGGCGGCGGCGCCCGGGTGCTCAGGCAGGACCCCGTCGAGTGCGTGTTCCAGTTCCTCTGCTCCTCCAACAACAACATCGCGCGGATCGAGAAGATGGTGTGGGCGCTGGCCGGCTACGGGGAGCGGCTCGGCGAGGTTGGAGGATACCAATTCCACCAATTCCCCACGATCGAGCGGCTCGCGCGCGTGTCGGAGCAAGAGCTCCGGGATGCCGGGTTCGGGTACAGGGCAAAGTACATCGTCGGCACTGCTAAAATATTACAGGCCAAGCCTGGTGGAGGCGAGAAATGGCTTGCCTCATTGCGTACAAGGGAACTCCCGGAGGTGATTGAGGCTCTTTGCACCCTTCCAGGTGTTGGGCCAAAAGTTGCAGCCTGTGTTGCTTTGTTCTCACTCGATCAGAACCATGCTATTCCTGTTGACACACATGTCTGGAAGGTTGCTACACAATATCTGATGCCGGAGCTAGCTGGCAAGAGCTTAACCCCAAAACTTAGTGTTGCTGTTGCCGATGCATTTGTTGCTAAATTTGGGAACTATGCTGGTTGGGCACAGAATGTTCTCTTTATTGGCCAGCTGTCTGCTCAAAAACTCATGGTTGCTGAAACTACAAACACTTCCACGAAACCTACTAAAAGGAAGCGTAGTGGAAACAATGTCAAAACATGA
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| Protein seq | MGCHPPLPTVAAAAAAGMPPRRRRRVRPPLPPSPPLLSSTTATPPPTPPVGTPKSEAADRRPPPARRRLPLVSAAAVEEEDGEWHPLPLSAADLSLPLTLPTGQTFLWRRTSLSPLRFTGAVGPHLVSLSHLPSSDGRLAFLLHNNGGSSSSSVPAAARAALSDYLNAAVPLADLWRRFAAADARFAEVSARLGGGGARVLRQDPVECVFQFLCSSNNNIARIEKMVWALAGYGERLGEVGGYQFHQFPTIERLARVSEQELRDAGFGYRAKYIVGTAKILQAKPGGGEKWLASLRTRELPEVIEALCTLPGVGPKVAACVALFSLDQNHAIPVDTHVWKVATQYLMPELAGKSLTPKLSVAVADAFVAKFGNYAGWAQNVLFIGQLSAQKLMVAETTNTSTKPTKRKRSGNNVKT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.585477 | 0.855951 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g34750 | RBH | 0.266141 | 0.624164 | 0.029557 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0552600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020930 | SBH | 0.224015 | 0.0 | 1.065708 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021010 | SBH | 0.036886 | 0.207486 | 0.122091 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0020990 | SBH | 0.000000 | 0.323324 | 0.581727 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020740 | SBH | 0.027518 | 0.028389 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020640 | RBH | 1.418057 | 0.0 | 0.518677 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0344300 | RBH | 0.634974 | 1.5460675 | 1.0839395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020370 | RBH | 0.000000 | 0.000000 | 0.030874 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0369600 | RBH | 0.7525595 | 1.963957 | 1.8896305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020860 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020610 | RBH | 0.053822 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021040 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020740 | RBH | 0.000000 | 0.052192 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020560 | RBH | 0.094109 | 0.146955 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021010 | RBH | 0.045803 | 0.000000 | 0.179761 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020740 | RBH | 0.000000 | 2.283685 | 0.000000 |
