Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0649900 | OGI:01080540 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:26222617-26225117 | ||||||||
| Gene Symbol | GELP20, OsGELP20, OsGELP20a, OsGELP20b, OsGELP20c | ||||||||||
| DNA seq | GCAGAGCCAATCCCAGTGGCGGCTTCGCCTTCGTGCCCGACGACCACCTCGAGCAGAAGGAAACGAAAGTGTAGGAAGGATGGTCTCCTCTACTTCCGGAGGACTCTCGCCGCCGGCGGTTGTGCTGGCCGTGGCGGTTGTGCTGTCGGCGGCGGCGTCACGGGCGCTGGCGGCGCCGTGCTACCCGCGCGTGTTCTGCTTCGGGGACTCGCTTACAGACACCGGCAACATCGCTTTCCTCTACGGCAACGACTCCCGCCGGCCCTCGCTGTGGCCACCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGCCGCTCCTCCAACGGCCGCCTCATCATCGACTTCATCGGTACGCCTCGTCATCCATCCAGGCCTCGTCTGCATATCGATTGATCGCTCGATCCATTGCTAATATGAGATGTGGAATAATTCGCGCGCGCGTGGTGTGCATGGGTACGCCTCGTCGCGCCGCGCCGCAGCTGAAGCGATGGGGCTGCCGTTCGTGCGGCCGTACTGGGGCGGGCAGACCGCGGGGAACTTCGCCAGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGCGCTCAGCCCGGACTTCTTCCGGGAGAGAGGGGTGCCCATGGACGACGACACCGTGCACCTCGACATGGAGATGGAGTGGTTCCGTGATCTGCTCGGCATGCTCTGCACCGGCGGCGACATGGACGGTATGTTTGAATCAAAAAACACCTCTCGCCTTGCACCCACCTTTGACAATGACGTTTTGAACGAGAGATCGTGGCAGTTCTCCTTTTCTAAGCACAAATCGTAGCGGTTGCTATTTAGTAGGTGGGGCTTTATTGTCTAGAAAGGTGCGTGCCTGGAGATATACCACAATCATTAACAATATTTTGAGTATACTAGTATATGATAATACACACCATGCCACTGCCAAATATTTGGTAAACATTATATGATTTCCACGTGATCAATTGTTTTACCCTTGAGTTGGTTGCATAGAACAAAATTGAAAAAAAAAACAAATATGTCAGGTCAATGATTCATGATTGTGTTGCTACAAATGAACAAAATCTGTCTAGTTTATAATAGGATAATAAACGGACATGCTGGAAGTAGTAGGTGAAGATAGTTTCTCTACCATATAAAGCAACAATTTTGATAGTTAAAGGTCCCTTTCAACTATTATTATCCATACATACGGATTCTAAACGATGTTTATCGCACAGGTTGCAAGGGCATGATGAATCAATCTCTTTTCTTGGTTGGAGAAATCGGAGGCAATGATTACAACCTTCCTCTTATGAGCGGCATGTCCATTGAAAAGATTCGCAACTTCACTCCTAGTGTCATTGCCAAAATTTCTTCCATAATCACCGTGAGTAATATGCCTATGTTGCATCATTTTATATACCTTCAGTTCCTGTTTCACAAAACAATACAATATTACAAAGCTTGTAATGAAACAAAGCTGAGTTCGTAGGAATTGATTGGACTTGGGGCCAAGACACTAGTTGTTCCCGGTAACATCCCAATTGGATGTATTCCAATGTACCTCATGCAATTTGAGAGTGATAAGAAGGAAGATTATGAGCCAAAGATAGGTTGCCTTAGGTGGATGAATGAGTTCTCGCAATACCACAACAAACTTCTTGTAGATGAATTGGAAAACTTGCGCAAGCTTCATCTTGATGTGACCATCATCTATGCCGATTACTATGGAGCTGCCATGGAAGTTTTCCTTTCCCCTGAACGATTTGGTCAGTGAAGCTATTTCATTACTGTTTGTAAGCTTTATACTATTAATTATAGTTTGTAGGTAACTACAAGAAAAAAAAAACTTTCTGTTGGCCTCTTAAATTTGACTTCTATGGCAATCTCGAACAAATGAAATCTTTTTGTAAATATGCTTGTACCACAATCACAACATCTAAATTGGGTTTCTCTCACTCCATATATTTACCAGGTTGGCTATTTTATTTTCATCATGTTATGGAATGCACTCCTGCACTACTTTCTATATTGATAAAGAACAACTTTTCTTGTCGGTAGCTTGTTTAACACTTCCTAATAAACTGCGGTTCAGGAATTGAGGATCCTTTGGTCGCTTGCTGTGGTGGAAGAGGACCTTATGGTGTATCTGCATCTGTACGCTGTGGATATGGCGAATACAAAGTGTGTGATGACCCAGCAAAATATGCATCGTGGGATGGCTTCCATCCATCAGAAGCTGCATACAAGGGCATTGCAATTGGCCTGCTACAGGGTTCATACACTCAACCTCCAATTGTTAGCATCACTAATTCTTGTCCGCAGATAATTGGCCTTGGTTCCTCTGTTGAACACAAGGCCATGTACGACTTGTAATTCTGTAATTATATTTTGTTATTATTATACACAATATGTGATTAAAATATGTAAAGGAATATTGTGGTATTGTTGTCTCATTATAGAACCACAGTACTGTTCTACATCACAACTGTTACTAAATGACATGTTGACTTTT
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| CDS seq | ATGGTCTCCTCTACTTCCGGAGGACTCTCGCCGCCGGCGGTTGTGCTGGCCGTGGCGGTTGTGCTGTCGGCGGCGGCGTCACGGGCGCTGGCGGCGCCGTGCTACCCGCGCGTGTTCTGCTTCGGGGACTCGCTTACAGACACCGGCAACATCGCTTTCCTCTACGGCAACGACTCCCGCCGGCCCTCGCTGTGGCCACCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGCCGCTCCTCCAACGGCCGCCTCATCATCGACTTCATCGCTGAAGCGATGGGGCTGCCGTTCGTGCGGCCGTACTGGGGCGGGCAGACCGCGGGGAACTTCGCCAGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGCGCTCAGCCCGGACTTCTTCCGGGAGAGAGGGGTGCCCATGGACGACGACACCGTGCACCTCGACATGGAGATGGAGTGGTTCCGTGATCTGCTCGGCATGCTCTGCACCGGCGGCGACATGGACGGTTGCAAGGGCATGATGAATCAATCTCTTTTCTTGGTTGGAGAAATCGGAGGCAATGATTACAACCTTCCTCTTATGAGCGGCATGTCCATTGAAAAGATTCGCAACTTCACTCCTAGTGTCATTGCCAAAATTTCTTCCATAATCACCGAATTGATTGGACTTGGGGCCAAGACACTAGTTGTTCCCGGTAACATCCCAATTGGATGTATTCCAATGTACCTCATGCAATTTGAGAGTGATAAGAAGGAAGATTATGAGCCAAAGATAGGTTGCCTTAGGTGGATGAATGAGTTCTCGCAATACCACAACAAACTTCTTGTAGATGAATTGGAAAACTTGCGCAAGCTTCATCTTGATGTGACCATCATCTATGCCGATTACTATGGAGCTGCCATGGAAGTTTTCCTTTCCCCTGAACGATTTGGAATTGAGGATCCTTTGGTCGCTTGCTGTGGTGGAAGAGGACCTTATGGTGTATCTGCATCTGTACGCTGTGGATATGGCGAATACAAAGTGTGTGATGACCCAGCAAAATATGCATCGTGGGATGGCTTCCATCCATCAGAAGCTGCATACAAGGGCATTGCAATTGGCCTGCTACAGGGTTCATACACTCAACCTCCAATTGTTAGCATCACTAATTCTTGTCCGCAGATAATTGGCCTTGGTTCCTCTGTTGAACACAAGGCCATGTACGACTTGTAA
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| Protein seq | MVSSTSGGLSPPAVVLAVAVVLSAAASRALAAPCYPRVFCFGDSLTDTGNIAFLYGNDSRRPSLWPPYGETFFHRATGRSSNGRLIIDFIAEAMGLPFVRPYWGGQTAGNFASGANFAVGGATALSPDFFRERGVPMDDDTVHLDMEMEWFRDLLGMLCTGGDMDGCKGMMNQSLFLVGEIGGNDYNLPLMSGMSIEKIRNFTPSVIAKISSIITELIGLGAKTLVVPGNIPIGCIPMYLMQFESDKKEDYEPKIGCLRWMNEFSQYHNKLLVDELENLRKLHLDVTIIYADYYGAAMEVFLSPERFGIEDPLVACCGGRGPYGVSASVRCGYGEYKVCDDPAKYASWDGFHPSEAAYKGIAIGLLQGSYTQPPIVSITNSCPQIIGLGSSVEHKAMYDL |
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| Function | GDSL esterase/lipase At1g28600 [UniProtKB/Swiss-Prot:Q94F40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0649900 | OsNip_01t0649900-01 | Chr01 | 26222617 | 26225117 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTCTCCTCTACTTCCGGAGGACTCTCGCCGCCGGCGGTTGTGCTGGCCGTGGCGGTTGTGCTGTCGGCGGCGGCGTCACGGGCGCTGGCGGCGCCGTGCTACCCGCGCGTGTTCTGCTTCGGGGACTCGCTTACAGACACCGGCAACATCGCTTTCCTCTACGGCAACGACTCCCGCCGGCCCTCGCTGTGGCCACCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGCCGCTCCTCCAACGGCCGCCTCATCATCGACTTCATCGCTGAAGCGATGGGGCTGCCGTTCGTGCGGCCGTACTGGGGCGGGCAGACCGCGGGGAACTTCGCCAGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGCGCTCAGCCCGGACTTCTTCCGGGAGAGAGGGGTGCCCATGGACGACGACACCGTGCACCTCGACATGGAGATGGAGTGGTTCCGTGATCTGCTCGGCATGCTCTGCACCGGCGGCGACATGGACGGTTGCAAGGGCATGATGAATCAATCTCTTTTCTTGGTTGGAGAAATCGGAGGCAATGATTACAACCTTCCTCTTATGAGCGGCATGTCCATTGAAAAGATTCGCAACTTCACTCCTAGTGTCATTGCCAAAATTTCTTCCATAATCACCGAATTGATTGGACTTGGGGCCAAGACACTAGTTGTTCCCGGTAACATCCCAATTGGATGTATTCCAATGTACCTCATGCAATTTGAGAGTGATAAGAAGGAAGATTATGAGCCAAAGATAGGTTGCCTTAGGTGGATGAATGAGTTCTCGCAATACCACAACAAACTTCTTGTAGATGAATTGGAAAACTTGCGCAAGCTTCATCTTGATGTGACCATCATCTATGCCGATTACTATGGAGCTGCCATGGAAGTTTTCCTTTCCCCTGAACGATTTGGAATTGAGGATCCTTTGGTCGCTTGCTGTGGTGGAAGAGGACCTTATGGTGTATCTGCATCTGTACGCTGTGGATATGGCGAATACAAAGTGTGTGATGACCCAGCAAAATATGCATCGTGGGATGGCTTCCATCCATCAGAAGCTGCATACAAGGGCATTGCAATTGGCCTGCTACAGGGTTCATACACTCAACCTCCAATTGTTAGCATCACTAATTCTTGTCCGCAGATAATTGGCCTTGGTTCCTCTGTTGAACACAAGGCCATGTACGACTTGTAA
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| Protein seq | MVSSTSGGLSPPAVVLAVAVVLSAAASRALAAPCYPRVFCFGDSLTDTGNIAFLYGNDSRRPSLWPPYGETFFHRATGRSSNGRLIIDFIAEAMGLPFVRPYWGGQTAGNFASGANFAVGGATALSPDFFRERGVPMDDDTVHLDMEMEWFRDLLGMLCTGGDMDGCKGMMNQSLFLVGEIGGNDYNLPLMSGMSIEKIRNFTPSVIAKISSIITELIGLGAKTLVVPGNIPIGCIPMYLMQFESDKKEDYEPKIGCLRWMNEFSQYHNKLLVDELENLRKLHLDVTIIYADYYGAAMEVFLSPERFGIEDPLVACCGGRGPYGVSASVRCGYGEYKVCDDPAKYASWDGFHPSEAAYKGIAIGLLQGSYTQPPIVSITNSCPQIIGLGSSVEHKAMYDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.528590 | 0.834293 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0649400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g46120 | RBH | 0.000000 | 0.353778 | 0.213710 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0649900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0027340 | SBH | 0.260041 | 20.908525 | 2.336586 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026830 | SBH | 0.203569 | 1.455687 | 0.704922 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0027280 | SBH | 2.658433 | 63.496506 | 4.767119 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0026520 | SBH | 0.043311 | 0.177659 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0026270 | SBH | 5.801051 | 4.938442 | 6.611800 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0440300 | RBH | 10.460499 | 8.50375 | 0.653802 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0025950 | SBH | 0.065240 | 0.747979 | 0.342313 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0429100 | RBH | 4.1148525 | 1.4302605 | 2.271668 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0026200 | SBH | 0.029404 | 0.114749 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0026120 | SBH | 0.460061 | 39.808311 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0026450 | SBH | 3.212515 | 6.024920 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0026500 | SBH | 0.617375 | 1.078523 | 1.113019 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0026330 | SBH | 0.000000 | 5.594605 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026710 | SBH | 0.336520 | 0.476939 | 0.929988 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0026480 | SBH | 0.654104 | 7.074429 | 0.962583 |
