Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0008580 | OGI:02001240 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:6174412-6176194 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaggtatgcttccactgaagctgttgccatgtagaaaaagattggttagtttgacaagattgccaacgaactctggaatatgtccgaagagattattctgtgcaaagcttagaatagagaggttgctcaaatttcctacggtagatggaatatgtccaaagaaattatttcttgcaaatattagatcgcgtatgctgctcagatttcctactgcaggtggaatatatccgaaaaacgaattgtcagagatatcaagcttctctaaatgcttccagtgccataaacttgatggtatactcccactaaagttgttcccatctatatgaaactcgattagttgggcaaggttgccaatgtaatctggaatttctccaaagagatcatttagtgcaaagcttagaatttgtaaattactaagatttcctatggaaggtgggatgtgaccactgaacagattgttatccatatacagaatagtgagactcctaaggttaccaatctccgagggaattatcccataaattttgttttgcttgagccacaaccactaaagctgtggggcaagattaccaaccgagctaggcaaacttccttcgagactgttaccatccaagcatacttttttcagttgggtgcagtttgcaagggatgagaggaagctccagtcacctgcttcaagatggttgtacgccagatcaagatctctcaagtttggcaataacccaaaggatggcactaccccggtgagcccagtagcaacaagataaatcatttctagcttagacatattagcaagagaagctgggattggcccacttagatgtgtcattgataggatcaagctttgtaggtttggaagcctgttaccaatatctggtggtagactggtagttggctgatgagagagttattggccatttcaagatattgcaaagatgacacgttgaaaattgactggggcacaggaccagacaagttgttatatgtgagaattaacctctctagttttcggagttcacttaggctcccaggaatactccccaccaagttatttactgctagagaaagacgaaccagggaagaaaggttgcccagtgaggctggtatccctcctctgagtttattctgggctagactaaggaattgaaaaggtgcagcaattgctgtaactggtggtatggaacccactaagttgttacggtttgtcaacgtggagctgttgaagagggctagtgggatccccccgtaagattattttgcttgagactaagcacttgaagggatgagctatttgccaagaactccgggattcctcctgtgagctgattgcccccaagatcaacatgtacaaaagatgggctactgcccaacaatggtggtatgtcacctgtgagggcgttgttggagagatccaaagttttcaattcatgcagcatcccaaatttggtgggaattctgccttggagcttattattgcaaagcacaacttgctggaggtgagtgcattgtgttaagcttggtggtatctcaccttggagggagttgttgcataagctgagtaccttgagtttgctgcacaaagacagttcatctggaatgtggccttcaagagagttgatgctcaggttgaggtagctgatttgtcccaagtgcccgagctcagttggtatttttccaagaaaggcgttgtttgataagtcgaggcttgtaatggagctcagattgccaatgcaaggtggtattgagccactgagtcctttggagctgatgtttagtgccat
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| CDS seq | atggcactaaacatcagctccaaaggactcagtggctcaataccaccttgcattggcaatctgagctccattacaagcctcgacttatcaaacaacgcctttcttggaaaaataccaactgagctcgggcacttgggacaaatcagctacctcaacctgagcatcaactctcttgaaggccacattccagatgaactgtctttgtgcagcaaactcaagccaactaccagtctaccaccagatattggtaacaggcttccaaacctacaaagcttgatcctatcaatgacacatctaagtgggccaatcccagcttctcttgctaatatgtctaagctagaaatgatttatcttgttgctactgggctcaccggggtagtgccatcctttgggttattgccaaacttgagagatcttgatctggcgtacaaccatcttgaagcaggtgactggagcttcctctcatcccttgcaaactgcacccaactgaaaaaacaaaacaaaatttatgggataattccctcggagattggtaaccttaggagtctcactattctgtatatggataacaatctgttcagtggtcacatcccaccttccataggaaatcttagtaatttacaaattctaagctttgcactaaatgatctctttggagaaattccagattacattggcaaccttgcccaactaatcgagtttcatatagatgggaacaactttagtgggagtataccatcaagtttatggcactggaagcatttagagaagcttgatatctctgacaattcgtttttcggatatattccacctgcagtaggaaatctgagcagcatacgcgatctaatatttgcaagaaataatttctttggacatattccatctaccgtaggaaatttgagcaacctctctattctaagctttgcacagaataatctcttcggacatattccagagttcgttggcaatcttgtcaaactaaccaatctttttctacatggcaacagcttcagtggaagcataccttaa
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| Protein seq | MALNISSKGLSGSIPPCIGNLSSITSLDLSNNAFLGKIPTELGHLGQISYLNLSINSLEGHIPDELSLCSKLKPTTSLPPDIGNRLPNLQSLILSMTHLSGPIPASLANMSKLEMIYLVATGLTGVVPSFGLLPNLRDLDLAYNHLEAGDWSFLSSLANCTQLKKQNKIYGIIPSEIGNLRSLTILYMDNNLFSGHIPPSIGNLSNLQILSFALNDLFGEIPDYIGNLAQLIEFHIDGNNFSGSIPSSLWHWKHLEKLDISDNSFFGYIPPAVGNLSSIRDLIFARNNFFGHIPSTVGNLSNLSILSFAQNNLFGHIPEFVGNLVKLTNLFLHGNSFSGSIP |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0008580 | OsNaBo_02g0008580.01 | Chr02 | 6174412 | 6176194 | - | NAM | ||
| CDS seq | atggcactaaacatcagctccaaaggactcagtggctcaataccaccttgcattggcaatctgagctccattacaagcctcgacttatcaaacaacgcctttcttggaaaaataccaactgagctcgggcacttgggacaaatcagctacctcaacctgagcatcaactctcttgaaggccacattccagatgaactgtctttgtgcagcaaactcaagccaactaccagtctaccaccagatattggtaacaggcttccaaacctacaaagcttgatcctatcaatgacacatctaagtgggccaatcccagcttctcttgctaatatgtctaagctagaaatgatttatcttgttgctactgggctcaccggggtagtgccatcctttgggttattgccaaacttgagagatcttgatctggcgtacaaccatcttgaagcaggtgactggagcttcctctcatcccttgcaaactgcacccaactgaaaaaacaaaacaaaatttatgggataattccctcggagattggtaaccttaggagtctcactattctgtatatggataacaatctgttcagtggtcacatcccaccttccataggaaatcttagtaatttacaaattctaagctttgcactaaatgatctctttggagaaattccagattacattggcaaccttgcccaactaatcgagtttcatatagatgggaacaactttagtgggagtataccatcaagtttatggcactggaagcatttagagaagcttgatatctctgacaattcgtttttcggatatattccacctgcagtaggaaatctgagcagcatacgcgatctaatatttgcaagaaataatttctttggacatattccatctaccgtaggaaatttgagcaacctctctattctaagctttgcacagaataatctcttcggacatattccagagttcgttggcaatcttgtcaaactaaccaatctttttctacatggcaacagcttcagtggaagcataccttaa
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| Protein seq | MALNISSKGLSGSIPPCIGNLSSITSLDLSNNAFLGKIPTELGHLGQISYLNLSINSLEGHIPDELSLCSKLKPTTSLPPDIGNRLPNLQSLILSMTHLSGPIPASLANMSKLEMIYLVATGLTGVVPSFGLLPNLRDLDLAYNHLEAGDWSFLSSLANCTQLKKQNKIYGIIPSEIGNLRSLTILYMDNNLFSGHIPPSIGNLSNLQILSFALNDLFGEIPDYIGNLAQLIEFHIDGNNFSGSIPSSLWHWKHLEKLDISDNSFFGYIPPAVGNLSSIRDLIFARNNFFGHIPSTVGNLSNLSILSFAQNNLFGHIPEFVGNLVKLTNLFLHGNSFSGSIP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0211900 | RBH | 0.359565 | 0.246918 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g12040 | RBH | 0.243156 | 0.166073 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0211900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024890 | RBH | 0.266269 | 0.551824 | 0.649657 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0008630 | SBH | 0.0 | 0.0 | 0.188894 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004170 | SBH | 0.137843 | 1.557139 | 0.736899 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0008360 | SBH | 0.0 | 0.011065 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0008480 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0007400 | SBH | 0.417008 | 1.525469 | 0.7026865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0008320 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0106900 | SBH | 0.3864625 | 0.6106665 | 4.002354 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0008750 | SBH | 0.030803 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0008410 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0008720 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0008690 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0008460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024900 | SBH | 0.199466 | 0.184480 | 0.440630 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0008540 | SBH | 0.269657 | 16.537720 | 0.668412 |
