Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0008690 | OGI:02001240 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:6554328-6556110 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaggtatgcttccactgaagctgttgccatgtagaaaaagattggttagtttgacaagattgccaacgaactctggaatatgtccgaagagattattctgtgcaaagcttagaatagagaggttgctcaaatttcctacggtagatggaatatgtccaaagaaattatttcttgcaaatattagatcgcgtatgctgctcagatttcctactgcaggtggaatatatccgaaaaacgaattgtcagagatatcaagcttctctaaatgcttccagtgccataaacttgatggtatactcccactaaagttgttcccatctatatgaaactcgattagttgggcaaggttgccaatgtaatctggaatttctccaaagagatcatttagtgcaaagcttagaatttgtaaattactaagatttcctatggaaggtgggatgtgaccactgaacagattgttatccatatacagaatagtgagactcctaaggttaccaatctccgagggaattatcccataaattttgttttgcttgagccacaaccactaaagctgtggggcaagattaccaaccgagctaggcaaacttccttcgagactgttaccatccaagcatacttttttcagttgggtgcagtttgcaagggatgagaggaagctccagtcacctgcttcaagatggttgtacgccagatcaagatctctcaagtttggcaataacccaaaggatggcactaccccggtgagcccagtagcaacaagataaatcatttctagcttagacatattagcaagagaagctgggattggcccacttagatgtgtcattgataggatcaagctttgtaggtttggaagcctgttaccaatatctggtggtagactggtagttggctgatgagagagttattggccatttcaagatattgcaaagatgacacgttgaaaattgactggggcacaggaccagacaagttgttatatgtgagaattaacctctctagttttcggagttcacttaggctcccagggatactccccaccaagttatttactgctagagaaagacgaaccagggaagaaaggttgcccagtgaggctggtatccctcctctgagtttattctgggctagactaaggaattgaaaaggtgcagcaattgctgtaactggtggtatggaacccactaagttgttacggtttgtcaacgtggagctgttgaagagggctagtgggatccccccgtaagattattttgcttgagactaagcacttgaagggatgagctatttgccaagaactccgggattcctcctgtgagctgattgcccccaagatcaacatgtacaaaagatgggctactgcccaacaatggtggtatgtcacctgtgagggcgttgttggagagatccaaagttttcaattcatgcagcatcccaaatttggtgggaattctgccttggagcttattattgcaaagcacaacttgctggaggtgagtgcattgtgttaagcttggtggtatctcaccttggagggagttgttgcataagctgagtaccttgagtttgctgcacaaagacagttcatctggaatgtggccttcaagagagttgatgctcaggttgaggtagctgatttgtcccaagtgcccgagctcagttggtatttttccaagaaaggcgttgtttgataagtcgaggcttgtaatggagctcagattgccaatgcaaggtggtattgagccactgagtcctttggagctgatgtttagtgccat
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| CDS seq | atggcactaaacatcagctccaaaggactcagtggctcaataccaccttgcattggcaatctgagctccattacaagcctcgacttatcaaacaacgcctttcttggaaaaataccaactgagctcgggcacttgggacaaatcagctacctcaacctgagcatcaactctcttgaaggccacattccagatgaactgtctttgtgcagcaaactcaagccaactaccagtctaccaccagatattggtaacaggcttccaaacctacaaagcttgatcctatcaatgacacatctaagtgggccaatcccagcttctcttgctaatatgtctaagctagaaatgatttatcttgttgctactgggctcaccggggtagtgccatcctttgggttattgccaaacttgagagatcttgatctggcgtacaaccatcttgaagcaggtgactggagcttcctctcatcccttgcaaactgcacccaactgaaaaaacaaaacaaaatttatgggataattccctcggagattggtaaccttaggagtctcactattctgtatatggataacaatctgttcagtggtcacatcccaccttccataggaaatcttagtaatttacaaattctaagctttgcactaaatgatctctttggagaaattccagattacattggcaaccttgcccaactaatcgagtttcatatagatgggaacaactttagtgggagtataccatcaagtttatggcactggaagcatttagagaagcttgatatctctgacaattcgtttttcggatatattccacctgcagtaggaaatctgagcagcatacgcgatctaatatttgcaagaaataatttctttggacatattccatctaccgtaggaaatttgagcaacctctctattctaagctttgcacagaataatctcttcggacatattccagagttcgttggcaatcttgtcaaactaaccaatctttttctacatggcaacagcttcagtggaagcataccttaa
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| Protein seq | MALNISSKGLSGSIPPCIGNLSSITSLDLSNNAFLGKIPTELGHLGQISYLNLSINSLEGHIPDELSLCSKLKPTTSLPPDIGNRLPNLQSLILSMTHLSGPIPASLANMSKLEMIYLVATGLTGVVPSFGLLPNLRDLDLAYNHLEAGDWSFLSSLANCTQLKKQNKIYGIIPSEIGNLRSLTILYMDNNLFSGHIPPSIGNLSNLQILSFALNDLFGEIPDYIGNLAQLIEFHIDGNNFSGSIPSSLWHWKHLEKLDISDNSFFGYIPPAVGNLSSIRDLIFARNNFFGHIPSTVGNLSNLSILSFAQNNLFGHIPEFVGNLVKLTNLFLHGNSFSGSIP |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0008690 | OsLiXu_02g0008690.01 | Chr02 | 6554328 | 6556110 | - | NAM | ||
| CDS seq | atggcactaaacatcagctccaaaggactcagtggctcaataccaccttgcattggcaatctgagctccattacaagcctcgacttatcaaacaacgcctttcttggaaaaataccaactgagctcgggcacttgggacaaatcagctacctcaacctgagcatcaactctcttgaaggccacattccagatgaactgtctttgtgcagcaaactcaagccaactaccagtctaccaccagatattggtaacaggcttccaaacctacaaagcttgatcctatcaatgacacatctaagtgggccaatcccagcttctcttgctaatatgtctaagctagaaatgatttatcttgttgctactgggctcaccggggtagtgccatcctttgggttattgccaaacttgagagatcttgatctggcgtacaaccatcttgaagcaggtgactggagcttcctctcatcccttgcaaactgcacccaactgaaaaaacaaaacaaaatttatgggataattccctcggagattggtaaccttaggagtctcactattctgtatatggataacaatctgttcagtggtcacatcccaccttccataggaaatcttagtaatttacaaattctaagctttgcactaaatgatctctttggagaaattccagattacattggcaaccttgcccaactaatcgagtttcatatagatgggaacaactttagtgggagtataccatcaagtttatggcactggaagcatttagagaagcttgatatctctgacaattcgtttttcggatatattccacctgcagtaggaaatctgagcagcatacgcgatctaatatttgcaagaaataatttctttggacatattccatctaccgtaggaaatttgagcaacctctctattctaagctttgcacagaataatctcttcggacatattccagagttcgttggcaatcttgtcaaactaaccaatctttttctacatggcaacagcttcagtggaagcataccttaa
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| Protein seq | MALNISSKGLSGSIPPCIGNLSSITSLDLSNNAFLGKIPTELGHLGQISYLNLSINSLEGHIPDELSLCSKLKPTTSLPPDIGNRLPNLQSLILSMTHLSGPIPASLANMSKLEMIYLVATGLTGVVPSFGLLPNLRDLDLAYNHLEAGDWSFLSSLANCTQLKKQNKIYGIIPSEIGNLRSLTILYMDNNLFSGHIPPSIGNLSNLQILSFALNDLFGEIPDYIGNLAQLIEFHIDGNNFSGSIPSSLWHWKHLEKLDISDNSFFGYIPPAVGNLSSIRDLIFARNNFFGHIPSTVGNLSNLSILSFAQNNLFGHIPEFVGNLVKLTNLFLHGNSFSGSIP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0211900 | SBH | 0.359565 | 0.246918 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g12040 | RBH | 0.243156 | 0.166073 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0211900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0008530 | SBH | 0.000000 | 0.0 | 0.584907 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0008630 | SBH | 0.0 | 0.0 | 0.188894 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004170 | SBH | 0.137843 | 1.557139 | 0.736899 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0008360 | SBH | 0.0 | 0.011065 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0008480 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0103600 | SBH | 0.4149225 | 0.5530555 | 0.552606 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0008320 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0106900 | SBH | 0.3864625 | 0.6106665 | 4.002354 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0008750 | SBH | 0.030803 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003980 | RBH | 0.070042 | 4.234505 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0008720 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0008540 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0008460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004310 | SBH | 0.850914 | 0.737580 | 0.524094 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004260 | SBH | 0.000000 | 0.353235 | 0.384476 |
