Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0084100 | OGI:11015440 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr11:5257502-5260673 | ||||||||
| Gene Symbol | OsFbox579, Os_F0334, - | ||||||||||
| DNA seq | AAGCCCAACAGCCATAATGACCCAACAACCCGTTTCTTGGTTTTAGGGCGTTCTCTGCTCCTCCCCTCAACGGCTCAAGCTCAACCCAACCTCCCCTCCTCCGTCCAGGTCCAGCCAAGCGAGGCGATTGGAGCCATCGGCGGCGAGGTGAGCTGAGGCGAGGTTGAGGCAGTGATCAACGAGCGAGACGCAAATCTTTCCCCTCCCCTCCTCACCATACTGGGATGATTTCTTTGTTTCCGCAGGTGCTCACCAGTCGTTCGACGGAATGCCTCCAGCAAAAAGGGCCAAGAAAGCGGCCGCGGCGGGCGGAGGCGACCTCATCGGCGCCCTCCCGGACGCGATGCTGCACCGCATCCTGTCCCTCCTCCCGGCGCAGGAGGCCGTGCGGACGTGCGTGCTGGCCCGGCGGTGGCGCCATCTCTGGAGGTCCGCCCCAGGCCTTCGCATCGTCCGCGCCGCCGGTCGGCCGCCGGCGACCGTCGAGGAGCTCCAGGGGTTCGTCGACCACCTCCTGCTCCTCCGCGGGGGCTCCCCTCTCGACGCCTGCGAGCTTTCCTTCGATCAGATCCGCAGACAAGACATTCCCCGCGTGAACCTCTGGATTCGTCACATTGTCATGTGCAAAGTCCGAGTGCTCGTGCTTCACCTCAATCCTTATTGTCATGAATTGGACGAACTGCCTCTGGTCTCGCAGCACCTGACGAGGTTGGAGCTTTCTGGTCTGATCTTAAACGACAGCTTCCTCAATTTCTCGAGCTGCCCGGCATTGGATTATCTAGAGATTGTCCAATGTTACTTCTCTTCTCTGACAAAGATCACATCGCAGTCGCTCAAGCGGCTAAGAATCATTAAATGTTTTACTGGTTCCCGCCCTCATGTGCATGCCACAAATCTCATTTCACTGCATCTGGATACCATAACAAGGACTCCTGTGCTTGAGAGATTGCCATCATTAGTGAAAGCAGACATCAAACTTAATAGTCAGTGTCGCGATTTCTGTAGTTTTGATGACTTTTCTGGGGATTGCAATCATGAATTCTGCGGCGGTTGTCGTGGCGTACAAGCTGAGAACTGCGTGCTTCTGCAAGGTTTATCAGAAGCTAAGAATCTGGCATTGGTAGCTGAAACTAAAATGGTACGCCACATGATCATATTCACCTTTGCATTTTATTTAACAGTGAGGATCATTGATCTTTCCCATATGCTCAGTTTGTTTTCAGAAGAGACTTGAAGTGGTGCCCTATCTTTAGGAATTTGAAGACTTTGTTACTCAATGAATGCTGGTGTGTGCCTTCCGATTTGAGTGCGCTAGTATGCATTCTTCAGCATTCACCTGTTTTAGAAAAGCTCACTCTTCAACTTTTTTCGATGGTATGCAGATTTTACGAATGAGCAGTTGTTGAGCTGTATAGAATTACTGTGCATCATTGATAATATTGTTTTCTGTTCATTCAAGGGACCTAAACATAAAGTAGAAATGAAGGGATGCCGCAATCCATCGGGAGTGTCAGCTGCATTGTTAAACATCTTGAGATTGTCGAGGTCAAATGTGAAGTGGTTGATGAGAGTGTTCTCAATGTTTTGAAGTTCCTTAGCGCACTTAACATATGTAAGATAACTATTGGCACTCATGCTTTTTATATTTATTCCATTTGCATTTTAAGGTGGAATAGAAAAGCAAGCAACTTAAGAAACTCCCAGGTTAGTAAAAGAAGCAGTGAATTTTTGGGATTCTAAATAAGTTAACAATTGTCATATGGAAACATATATGTAGATAAGAGTCTTTCATGTTTTCCATGTGGGAATGAATGAAGAAACTATGTCATTGGAATAACACTGAATGTTACATCAATTGGAGAGAAAAATTAATACCCGCATTACATATGGTGGGTACAGAACAAAAACAAGTGTTAATCCTCAAAGCTGTACTTGATAAGTCCTCAAAACTTGTTGCATTCATGAGATGTTGACATGTGATTAGTTCAGATCATTATGTCTGAATTGAGTTGTTTCGAGCAGCAGCAGTGAGCTTTGTTATTGTTTTAACTGACCTTCTTATAAGAGATAATCCAAGAAATGCCATTGACAAGCGTCCAAATCCTAGAAATGCCATCGTCAAGTGTGAGTTTCAAGAAATGCCATCGTATAAACGACTTTGTCCCAAAAATACCATCGCCGTTAGGGTTCCGTCTATTTTGCGCCGTTAAGTTCTATAGGATGAACAGTATATTTAACGGCGCAAAATGAATGGAACCCTAACGGCGATGGCATTTTTTAGACAAAATCGTTTGTACGATGGCATTTCTTGGAACTCACACTTGTCGATGGCATTTCTGGGACTTGGACGCTTGTCAATGGCATTTCTTGGATTATCTCTATAACATTGTAGTACCTCACATTCAATCATTTTATTTAGATATTCCTCTGTTTTTTTGAACTCTTAAAGCAAGTGCTTGTTTTTCTAAGGATGCAAATAGCCAATATATCATGCCCAATTGCTTTTTATTTGACTTCCTTGTTCACTTATTGACTTCCATGTGCATTTTAGTGAGGAGCCTAGAAGCACACCTCGTCTGTATTACTGACCACTCGATTCTCCTTGTTATATGAATGCATTTCTTCTTAGGAAGTGTGCAGCCAAGCTTCTCAACTTTGAGCATTATAAATTGGTTATGGCAAAGTTTCCTACCCAAGACTTTGTCTATATCCAAAATCAGTGTTTTCACTGTTTCTCAATTTTAGTATAACGTATGTCAAGCTTTCAAGTGAAATTGTTATGCGCTCAATCTTATTTCTGCCTCTTACGTTTCCTCGTCATGTTTTTTTTTTTCTACTCAGGCTTCATTTTCAAGAAATAGAAGGGTTGGGCAGAAGATGGACGTACTGCTCGAAGGAAATGGAATGCTCCATCAGGGAAGCACCCACAATACTTGAAATTACGTGTTTTATGTGTGGGATTCTGTTGAGATCTGCGTGTAGGAACAACGTAAGTCAGCTATGAGTTTGTAGTTGTACCGTTTATGTGGACATGGATTACCGTACTACTATCGTATCTAGTCAACACCCCAGTTTATGCCTTGAATCCGTGGTTCTATTTTTCTTAAGCCATGATTCATTCCTTGATTCCCATAAGCACAAAATTTAACATGCTTCAAAGTTGATGTCCCAT
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| CDS seq | AAGCCCAACAGCCATAATGACCCAACAACCCGTTTCTTGGTTTTAGGGCGTTCTCTGCTCCTCCCCTCAACGGCTCAAGCTCAACCCAACCTCCCCTCCTCCGTCCAGGTCCAGCCAAGCGAGGCGATTGGAGCCATCGGCGGCGAGTCGTTCGACGGAATGCCTCCAGCAAAAAGGGCCAAGAAAGCGGCCGCGGCGGGCGGAGGCGACCTCATCGGCGCCCTCCCGGACGCGATGCTGCACCGCATCCTGTCCCTCCTCCCGGCGCAGGAGGCCGTGCGGACGTGCGTGCTGGCCCGGCGGTGGCGCCATCTCTGGAGGTCCGCCCCAGGCCTTCGCATCGTCCGCGCCGCCGGTCGGCCGCCGGCGACCGTCGAGGAGCTCCAGGGGTTCGTCGACCACCTCCTGCTCCTCCGCGGGGGCTCCCCTCTCGACGCCTGCGAGCTTTCCTTCGATCAGATCCGCAGACAAGACATTCCCCGCGTGAACCTCTGGATTCGTCACATTGTCATGTGCAAAGTCCGAGTGCTCGTGCTTCACCTCAATCCTTATTGTCATGAATTGGACGAACTGCCTCTGGTCTCGCAGCACCTGACGAGGTTGGAGCTTTCTGGTCTGATCTTAAACGACAGCTTCCTCAATTTCTCGAGCTGCCCGGCATTGGATTATCTAGAGATTGTCCAATGTTACTTCTCTTCTCTGACAAAGATCACATCGCAGTCGCTCAAGCGGCTAAGAATCATTAAATGTTTTACTGGTTCCCGCCCTCATGTGCATGCCACAAATCTCATTTCACTGCATCTGGATACCATAACAAGGACTCCTGTGCTTGAGAGATTGCCATCATTAGTGAAAGCAGACATCAAACTTAATAGTCAGTGTCGCGATTTCTGTAGTTTTGATGACTTTTCTGGGGATTGCAATCATGAATTCTGCGGCGGTTGTCGTGGCGTACAAGCTGAGAACTGCGTGCTTCTGCAAGGTTTATCAGAAGCTAAGAATCTGGCATTGGTAGCTGAAACTAAAATGGGACCTAAACATAAAGTAGAAATGAAGGGATGCCGCAATCCATCGGGAGTGTCAGCTGCATTGTTAAACATCTTGAGATTGTCGAGGTCAAATGTGAAGTGGTTGATGAGAGTGTTCTCAATGTGGAATAGAAAAGCAAGCAACTTAAGAAACTCCCAGGCTTCATTTTCAAGAAATAGAAGGGTTGGGCAGAAGATGGACGTACTGCTCGAAGGAAATGGAATGCTCCATCAGGGAAGCACCCACAATACTTGA
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| Protein seq | KPNSHNDPTTRFLVLGRSLLLPSTAQAQPNLPSSVQVQPSEAIGAIGGESFDGMPPAKRAKKAAAAGGGDLIGALPDAMLHRILSLLPAQEAVRTCVLARRWRHLWRSAPGLRIVRAAGRPPATVEELQGFVDHLLLLRGGSPLDACELSFDQIRRQDIPRVNLWIRHIVMCKVRVLVLHLNPYCHELDELPLVSQHLTRLELSGLILNDSFLNFSSCPALDYLEIVQCYFSSLTKITSQSLKRLRIIKCFTGSRPHVHATNLISLHLDTITRTPVLERLPSLVKADIKLNSQCRDFCSFDDFSGDCNHEFCGGCRGVQAENCVLLQGLSEAKNLALVAETKMGPKHKVEMKGCRNPSGVSAALLNILRLSRSNVKWLMRVFSMWNRKASNLRNSQASFSRNRRVGQKMDVLLEGNGMLHQGSTHNT |
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| Function | F-box/LRR-repeat protein At4g14096 [UniProtKB/Swiss-Prot:Q94B46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0084100 | OsMH63_11T0084100-mRNA-1 | Chr11 | 5257502 | 5260673 | + | maker | ||
| CDS seq | AAGCCCAACAGCCATAATGACCCAACAACCCGTTTCTTGGTTTTAGGGCGTTCTCTGCTCCTCCCCTCAACGGCTCAAGCTCAACCCAACCTCCCCTCCTCCGTCCAGGTCCAGCCAAGCGAGGCGATTGGAGCCATCGGCGGCGAGTCGTTCGACGGAATGCCTCCAGCAAAAAGGGCCAAGAAAGCGGCCGCGGCGGGCGGAGGCGACCTCATCGGCGCCCTCCCGGACGCGATGCTGCACCGCATCCTGTCCCTCCTCCCGGCGCAGGAGGCCGTGCGGACGTGCGTGCTGGCCCGGCGGTGGCGCCATCTCTGGAGGTCCGCCCCAGGCCTTCGCATCGTCCGCGCCGCCGGTCGGCCGCCGGCGACCGTCGAGGAGCTCCAGGGGTTCGTCGACCACCTCCTGCTCCTCCGCGGGGGCTCCCCTCTCGACGCCTGCGAGCTTTCCTTCGATCAGATCCGCAGACAAGACATTCCCCGCGTGAACCTCTGGATTCGTCACATTGTCATGTGCAAAGTCCGAGTGCTCGTGCTTCACCTCAATCCTTATTGTCATGAATTGGACGAACTGCCTCTGGTCTCGCAGCACCTGACGAGGTTGGAGCTTTCTGGTCTGATCTTAAACGACAGCTTCCTCAATTTCTCGAGCTGCCCGGCATTGGATTATCTAGAGATTGTCCAATGTTACTTCTCTTCTCTGACAAAGATCACATCGCAGTCGCTCAAGCGGCTAAGAATCATTAAATGTTTTACTGGTTCCCGCCCTCATGTGCATGCCACAAATCTCATTTCACTGCATCTGGATACCATAACAAGGACTCCTGTGCTTGAGAGATTGCCATCATTAGTGAAAGCAGACATCAAACTTAATAGTCAGTGTCGCGATTTCTGTAGTTTTGATGACTTTTCTGGGGATTGCAATCATGAATTCTGCGGCGGTTGTCGTGGCGTACAAGCTGAGAACTGCGTGCTTCTGCAAGGTTTATCAGAAGCTAAGAATCTGGCATTGGTAGCTGAAACTAAAATGGGACCTAAACATAAAGTAGAAATGAAGGGATGCCGCAATCCATCGGGAGTGTCAGCTGCATTGTTAAACATCTTGAGATTGTCGAGGTCAAATGTGAAGTGGTTGATGAGAGTGTTCTCAATGTGGAATAGAAAAGCAAGCAACTTAAGAAACTCCCAGGCTTCATTTTCAAGAAATAGAAGGGTTGGGCAGAAGATGGACGTACTGCTCGAAGGAAATGGAATGCTCCATCAGGGAAGCACCCACAATACTTGA
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| Protein seq | KPNSHNDPTTRFLVLGRSLLLPSTAQAQPNLPSSVQVQPSEAIGAIGGESFDGMPPAKRAKKAAAAGGGDLIGALPDAMLHRILSLLPAQEAVRTCVLARRWRHLWRSAPGLRIVRAAGRPPATVEELQGFVDHLLLLRGGSPLDACELSFDQIRRQDIPRVNLWIRHIVMCKVRVLVLHLNPYCHELDELPLVSQHLTRLELSGLILNDSFLNFSSCPALDYLEIVQCYFSSLTKITSQSLKRLRIIKCFTGSRPHVHATNLISLHLDTITRTPVLERLPSLVKADIKLNSQCRDFCSFDDFSGDCNHEFCGGCRGVQAENCVLLQGLSEAKNLALVAETKMGPKHKVEMKGCRNPSGVSAALLNILRLSRSNVKWLMRVFSMWNRKASNLRNSQASFSRNRRVGQKMDVLLEGNGMLHQGSTHNT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0084100 | OsMH63_11T0084100-mRNA-2 | Chr11 | 5257502 | 5260673 | + | maker | ||
| CDS seq | AAGCCCAACAGCCATAATGACCCAACAACCCGTTTCTTGGTTTTAGGGCGTTCTCTGCTCCTCCCCTCAACGGCTCAAGCTCAACCCAACCTCCCCTCCTCCGTCCAGGTCCAGCCAAGCGAGGCGATTGGAGCCATCGGCGGCGAGTCGTTCGACGGAATGCCTCCAGCAAAAAGGGCCAAGAAAGCGGCCGCGGCGGGCGGAGGCGACCTCATCGGCGCCCTCCCGGACGCGATGCTGCACCGCATCCTGTCCCTCCTCCCGGCGCAGGAGGCCGTGCGGACGTGCGTGCTGGCCCGGCGGTGGCGCCATCTCTGGAGGTCCGCCCCAGGCCTTCGCATCGTCCGCGCCGCCGGTCGGCCGCCGGCGACCGTCGAGGAGCTCCAGGGGTTCGTCGACCACCTCCTGCTCCTCCGCGGGGGCTCCCCTCTCGACGCCTGCGAGCTTTCCTTCGATCAGATCCGCAGACAAGACATTCCCCGCGTGAACCTCTGGATTCGTCACATTGTCATGTGCAAAGTCCGAGTGCTCGTGCTTCACCTCAATCCTTATTGTCATGAATTGGACGAACTGCCTCTGGTCTCGCAGCACCTGACGAGTTTTGATGACTTTTCTGGGGATTGCAATCATGAATTCTGCGGCGGTTGTCGTGGCGTACAAGCTGAGAACTGCGTGCTTCTGCAAGGTTTATCAGAAGCTAAGAATCTGGCATTGGTAGCTGAAACTAAAATGGGACCTAAACATAAAGTAGAAATGAAGGGATGCCGCAATCCATCGGGAGTGTCAGCTGCATTGTTAAACATCTTGAGATTGTCGAGGTCAAATGTGAAGTGGTTGATGAGAGCTTCATTTTCAAGAAATAGAAGGGTTGGGCAGAAGATGGACGTACTGCTCGAAGGAAATGGAATGCTCCATCAGGGAAGCACCCACAATACTTGA
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| Protein seq | KPNSHNDPTTRFLVLGRSLLLPSTAQAQPNLPSSVQVQPSEAIGAIGGESFDGMPPAKRAKKAAAAGGGDLIGALPDAMLHRILSLLPAQEAVRTCVLARRWRHLWRSAPGLRIVRAAGRPPATVEELQGFVDHLLLLRGGSPLDACELSFDQIRRQDIPRVNLWIRHIVMCKVRVLVLHLNPYCHELDELPLVSQHLTSFDDFSGDCNHEFCGGCRGVQAENCVLLQGLSEAKNLALVAETKMGPKHKVEMKGCRNPSGVSAALLNILRLSRSNVKWLMRASFSRNRRVGQKMDVLLEGNGMLHQGSTHNT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.2520805 | 0.024792 | 0.909983 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0199900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g09590 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0199900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006540 | RBH | 1.255232 | 11.059969 | 24.505333 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006510 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006530 | SBH | 0.629927 | 3.859250 | 2.320578 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006430 | SBH | 0.026985 | 0.037452 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006390 | SBH | 0.0 | 0.0 | 0.969774 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0083300 | SBH | 2.6366925 | 3.240256 | 2.232241 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006410 | SBH | 0.0 | 0.0 | 0.105699 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0085400 | SBH | 0.432593 | 0.085564 | 9.593413 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006390 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006470 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006470 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006500 | RBH | 0.873359 | 0.0 | 0.723187 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006510 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006490 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006370 | SBH | 0.242504 | 2.849076 | 0.510408 |
