Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0199900 | OGI:11015440 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:5026325-5027273 | ||||||||
| Gene Symbol | OsFbox572, Os_F0135, Os_F0031, OsFbox577, Os_F0135, OsFbox578, Os_F0136, OsFbox579, Os_F0334, OsFbox580, Os_F0096, OsFbox590, Os_F0068, Fbox-6, OsFbox603, Os_F0489 | ||||||||||
| DNA seq | TCTGTAGCCTCCAGGTTTGGCGCTCACCACCTGTTCGACGAAATGCGGCAAGAGGGAGCAGATGTGCGCGGCAGCCACAAGATCAAGAAGACGACTGCTGATGTGGAAGGCGGGGGTGAATGGATCAACGCCCTCCCGGAAGAGGTCCTGCAGCACGTGATGTCGTTCCTGCCGGCGAAGCAGGCCGTCCGGACCTGCGTCCTCGCCCGGCGCTGGCGCCACCTGTGGAAATCCATGCCTGCTCTGCGTTCCATCCATGGTATCTGAACAAGCACGATGTCAGGAACCTGAACAGGTTTATGAATTGTTTGATTCGCTACCGGGACCGCAGAATGCCACTAGATATGTGCGAGATCAAAATCGGTGCTTTTGGGGAGGGCTGTGGTGAACCACAGGTTGACTCACTTATCAGATATGCCTCTGTTGCGCAAAGCTCGGATAATGAAGGTCGAATTGCATGAGCACAACGATAACTTTTTCTCTAGCCAAGCTGCCTCTTATCTCCCAGCGCTTGACGAGGTTAGAGCTTAGTAATGTGCCATTATTATGTGGTTTTGTTGATTCTTTGAGCTTCCCAGCATGGAGGCCCTATGGATGAAGTTCTGCTATATAGACGGTGAGAAGATATCGTCTCAGTCACTTAAAGAGCTGACCATGATTGACTGTATATTTTTTCGCCAATTTCGGATTTCTGCTCCAAGTTTGGTGAGGTTGGAAATAACTGATTGTGTGGGTAAAGCTCCTGTGCTGGAAATAATGCCATCTCTAGTAAAGGCATTTATCAGGTTCCGAGACTCTAGAGATATTTGTGGTAAAGAAGAATTTGGGGGTAGTTGTACTAATGCTAGCTGTGATAATTGTGGTGCTAATGGTGTTGACAGTGGAGATTGTGTGCTTCTGAAGGGTATTTCAATGGCAAAAAGCTTGGAGTTGGTAGCTGAACCTGGTG
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| CDS seq | ATGCGGCAAGAGGGAGCAGATGTGCGCGGCAGCCACAAGATCAAGAAGACGACTGCTGATGTGGAAGGCGGGGGTGAATGGATCAACGCCCTCCCGGAAGAGGTCCTGCAGCACGTGATGTCGTTCCTGCCGGCGAAGCAGGCCGTCCGGACCTGCGTCCTCGCCCGGCGCTGGCGCCACCTGTGGAAATCCATGCCTGCTCTGCGTTCCATCCATGGTATCTGA |
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| Protein seq | MRQEGADVRGSHKIKKTTADVEGGGEWINALPEEVLQHVMSFLPAKQAVRTCVLARRWRHLWKSMPALRSIHGI |
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| Function | Putative F-box/LRR-repeat protein At3g28410 [UniProtKB/Swiss-Prot:Q9LSJ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0199900 | Os11t0199900-00 | Chr11 | 5026325 | 5027273 | + | irgsp1_rep | ||
| CDS seq | ATGCGGCAAGAGGGAGCAGATGTGCGCGGCAGCCACAAGATCAAGAAGACGACTGCTGATGTGGAAGGCGGGGGTGAATGGATCAACGCCCTCCCGGAAGAGGTCCTGCAGCACGTGATGTCGTTCCTGCCGGCGAAGCAGGCCGTCCGGACCTGCGTCCTCGCCCGGCGCTGGCGCCACCTGTGGAAATCCATGCCTGCTCTGCGTTCCATCCATGGTATCTGA
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| Protein seq | MRQEGADVRGSHKIKKTTADVEGGGEWINALPEEVLQHVMSFLPAKQAVRTCVLARRWRHLWKSMPALRSIHGI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0199900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g09360 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006940 | SBH | 0.072042 | 0.389919 | 0.259181 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006550 | SBH | 0.142942 | 0.162571 | 0.531425 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006470 | SBH | 1.285396 | 0.405356 | 2.452377 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006310 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006790 | SBH | 0.307655 | 0.691442 | 0.774625 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0089800 | RBH | 0.4881505 | 1.281045 | 0.838145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006770 | SBH | 0.011060 | 0.088273 | 0.035899 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0085700 | SBH | 5.4372965 | 2.440776 | 7.4983255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006760 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006830 | RBH | 0.021393 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006840 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006500 | SBH | 0.873359 | 0.0 | 0.723187 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006880 | RBH | 0.014501 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006530 | RBH | 0.081235 | 0.000000 | 0.558527 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006700 | RBH | 0.118869 | 0.0 | 0.998583 |
