Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0001030 | OGI:11002760 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:710096-714087 | ||||||||
| Gene Symbol | OsLTP1.12, OsLtpI.12, OsLTP1.13, OsLtpI.13, OsLTP1.20, OsLtpI.20, LTP1.20, OsLTPL14, LTPL14 | ||||||||||
| DNA seq | atcaccggcgacgaggagacactcactgatataatcaagctagctagcttaatcacctagctatccgtcagtttagctagatatggctgcagttaactgcaaggtggtggtcgccgtgattgtggtggcgatggtggttgcggcgccgggggcgtcggcggcgataacgtgcgggcaggtgggatcggcgatcgcgccgtgcatctcgtacgtgacggggaggagcggcctcacgcagggatgctgcaacggagtgaaggggctgaacaacgccgcccgcaccaccgccgaccgccaggcggcctgccgctgcctcaagagcctcgccggcagcatcaagtcgctcaacctcggcaccgtcgccggcgtccccggcaagtgcggcgtcaacgtcggcttccccatcagcctctccaccgactgcaacaagtatatcatctctctatgactcctctctctctctctctctatatatacacacgcatatatctctttattttttacgtgctatttaaatactcactccgtttcaggttataagacgttttaactttaattaaagttaaacttctctaagtttaactaattccgtagaaaaaagtaataatatttaaataccatcatagtttcattaaatccataattgaataaattttcataatatatttgtcataggttaaaaaagatactacttttttactacaaaatcagtaaaacttacagtattttaactttgaccaaagtcaaaatgtcttataatctaaaacggagtaatagttaataaaaacttttacaagttaagatagattaccatatgtgagatatatctcacttcatagacataaaagattaaattcaacttatacaagttaaattaaaaaaacaaactaaactaacactagttaacgtattttcgctattatatctgttattattgttacaacttatataagtttaatttaaacatgtatatttatggacatacatatttaatattaatctatcttatcattttgttttactttttaatggctattaaggtggggggatgaaagcaacaatgagatatttctcgagatatgaaacattttcccataaaataactacctatatatatgcattttttttctttggtgcagggtcagctagatcaattaatcctgcttggatcgatcgatcgagcttaacacgctagctcgatcggagttgatcagctagtaattaagcacgtacttgctacagcatatatgaacaaagtaattaaaataacagctgcggcagacatgcagcgctccattctctctctgtatcagctgtatactttatgttgcacgctccctgtgtgcatgttctatcttaattttcttcagtatgtacacgatctgtgtgtactacgtgtaatcctatacgttttatgaattgcatgttgtccaaatgtctttgtcctagctactagctactccagcttcttgctgaggaaatctgcagtagtagtaatccctcgttgtgatacgcaacaaaattgtttaatgtgatcctgctatatatatagaaaatcatctctattattttacaggcataaaacaagtccactctaaaaacaattagtgcggccattgtcttaatagacccgtatgtgaaaatcgtttttcacaagcagttccttaagacaacttcatgtatcattattgtagtatgtcaaaaagatgcaccacactatgcacagtcatacaaaatggcactactacacaactgatcttttatcgggatatccatttcggatagatttagaacgggtattagagatatttttaagcaccggttaccaaaaacatctttaattccgattggtgttacaaccggtactaaagatgtctacagggttagtttaaaaagaaagcatccatatccatgtctgatgggtggagttggtggatggttacacgcgtgagggctgaggtgagagatcttgagttcgaatcacatatcccacacattttttttatttcgtatgcatctttagtaccggttatttcaactggtactaaagatcgagatatttagtctcgatttgttagaaccggttctacatctaaaacggttcccaactgtgctaaaaataggttctccactagtgtggcaatacatttacattcacacattaaggattcacatcatcacccatattcacgttgacactgtcttttaatgtataatttaaatgttcacattgtgaatattcgacaatgatagggagcccgatccctatctacaagtctaaacctaagattaatttgatcgacatgagctaatgaatagataagcgcactatctattgcttgaaatggtagatccattaatttccttttcatatatagattattgtaaaaagttgtcgttggctgattggaaatagacttgggcatgaaacctataccctctgcaactccacgtaatcgaaaatcatcctggaatagacccaaggatgaaatttagaccaaggaacgaaattgggcatctataagtgtggggagacaaaaataaacggtttcatagagttaaatgatcaaagttggaacaatattgcaatagttgatgattaaattaattaatgtggacttctttaaaccatatatagactgtgttcggcagcgctgttcctaacactactagtacgcatgaaaaatggaacggtccattagcgcatgattaattaagtattagctattttttttaaaaaaaaatgaattaatttgatttttttcaagcaactttcatatagaaacttttttaaaaaacgcaccgtttagcagtttcaaaagcgtacgcacgaaaaacgagggaggagggttgagaaaaagggtgccgaagtattgtgcgctagatactggtaggggcattgttgtccatcctcggaagtggctcaaatataacgtgccacgacattagcgccatttcttacacgaaaacgaaacagggaaaactaattgaacaaatagagagatatgtagctagctagctttcagagtccacttttttgagagagctcaatccaatgtgtggtttggctgcagcgacgaaccagaataatctcactctgctggtgcacccaatcaccaaatccaaaggaaattcaatgtacaacaaaattaaaaagaacatcttataatttgtctcctcctcctgcatatgcttgactcctagcttaactagaggtacctgcagccagccatgcggcggctgggtgacgtcgtggaggcgccggcgctggtgctgacgccggcctccatgcagcaggccggcgggagggggagctccggcgccttggacgccagcatggtcgtcatcctcgccgcgctgctctgcgccgtcatctgcgccctcggcctcacctccctcatccgctgcgcgctccactgcgcccgcggcctctcccccaccacggcgacgccgacgccgtcggtgtcgacagctgctacggccgggctgaagaagacggagctgaggaggattccggtggaggtgtacggcgccaagcaggccggcgtccccgacggcgagtgcgccatctgcctgggcgacttcgccgacggcgacaaggtgcgcgtgctcccgaggtgccaccacggcttccacgtccgctgcatcgacacgtggctcgccgcgcacacgtcctgccctacttgccgggactccattctctccgtccatggagtcgtcgccggcggccaaacatagctagtaatataatttcttgaacagaagaggtctaaaatgtaaatagaatataggtggtaaagtactccaaaattgggattgcgtaaatgcaagggattggacacaatgtttgcagtgtctctgtcacttggattatccatctgtttagctgtttctatgagttttctcctttaatttgtgtgctagcacatgatatttcccccaagattcgctgttcgtttgttctgggcataattttgtcaccactcaacaac
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| CDS seq | atggctgcagttaactgcaaggtggtggtcgccgtgattgtggtggcgatggtggttgcggcgccgggggcgtcggcggcgataacgtgcgggcaggtgggatcggcgatcgcgccgtgcatctcgtacgtgacggggaggagcggcctcacgcagggatgctgcaacggagtgaaggggctgaacaacgccgcccgcaccaccgccgaccgccaggcggcctgccgctgcctcaagagcctcgccggcagcatcaagtcgctcaacctcggcaccgtcgccggcgtccccggcaagtgcggcgtcaacgtcggcttccccatcagcctctccaccgactgcaacaaccagccatgcggcggctgggtgacgtcgtggaggcgccggcgctggtgctga |
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| Protein seq | MAAVNCKVVVAVIVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTDCNNQPCGGWVTSWRRRRWC |
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| Function | Probable non-specific lipid-transfer protein 3 [UniProtKB/Swiss-Prot:Q84N29] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0001030 | OsLima_11g0001030.01 | Chr11 | 710096 | 714087 | + | NAM | ||
| CDS seq | atggctgcagttaactgcaaggtggtggtcgccgtgattgtggtggcgatggtggttgcggcgccgggggcgtcggcggcgataacgtgcgggcaggtgggatcggcgatcgcgccgtgcatctcgtacgtgacggggaggagcggcctcacgcagggatgctgcaacggagtgaaggggctgaacaacgccgcccgcaccaccgccgaccgccaggcggcctgccgctgcctcaagagcctcgccggcagcatcaagtcgctcaacctcggcaccgtcgccggcgtccccggcaagtgcggcgtcaacgtcggcttccccatcagcctctccaccgactgcaacaaccagccatgcggcggctgggtgacgtcgtggaggcgccggcgctggtgctga
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| Protein seq | MAAVNCKVVVAVIVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTDCNNQPCGGWVTSWRRRRWC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0001030 | OsLima_11g0001030.02 | Chr11 | 710096 | 711527 | + | IsoSeq | ||
| CDS seq | atgaacaaagtaattaaaataacagctgcggcagacatgcagcgctccattctctctctgtatcagctgtatactttatgttgcacgctccctgtgtgcatgttctatcttaattttcttcagtatgtacacgatctgtgtgtactacgtgtaatcctatacgtt |
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| Protein seq | MNKVIKITAAADMQRSILSLYQLYTLCCTLPVCMFYLNFLQYVHDLCVLRVILYV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.329806 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0116000 | SBH | 32.762730 | 30.514389 | 70.704391 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02340 | RBH | 17.876951 | 20.041870 | 36.037876 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0116000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0001120 | RBH | 1.369527 | 0.0 | 14.955258 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0001140 | SBH | 13.196087 | 0.0 | 29.267920 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001110 | SBH | 30.738365 | 0.0 | 60.309986 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001110 | SBH | 3.231797 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001130 | SBH | 379.719330 | 8.934269 | 266.842957 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0014500 | RBH | 248.800827 | 0 | 0.095122 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001150 | RBH | 0.994117 | 0.0 | 6.343716 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0016200 | RBH | 255.9675525 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000970 | SBH | 1.320028 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001130 | SBH | 44.296913 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001130 | SBH | 226.499939 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001130 | RBH | 13.811701 | 0.0 | 12.057741 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001160 | SBH | 10.740695 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001120 | RBH | 1.510429 | 0.0 | 3.862251 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001120 | SBH | 75.693802 | 0.0 | 185.052811 |
