Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0014500 | OGI:11002760 | 14/16 | Minghui 63 | MH63RS3 | HZAU | Chr11:761317-762382 | ||||||||
| Gene Symbol | OsLTP1.12, OsLtpI.12, OsLTP1.20, OsLtpI.20, LTP1.20, OsLTPL14, LTPL14 | ||||||||||
| DNA seq | ATGGCTGCAGTTAACTGCAAGGTGGTGGTCGCCGTGATTGTGGTGGCGATGGTGGTTGCGGCGCCGGGGGCGTCGGCGGCGATAACGTGCGGGCAGGTGGGATCGGCGATCGCGCCGTGCATCTCGTACGTGACGGGGAGGAGCGGCCTCACGCAGGGATGCTGCAACGGAGTGAAGGGGCTGAACAACGCCGCCCGCACCACCGCCGACCGCCAGGCGGCCTGCCGCTGCCTCAAGAGCCTCGCCGGCAGCATCAAGTCGCTCAACCTCGGCACCGTCGCCGGCGTCCCCGGCAAGTGCGGCGTCAACGTCGGCTTCCCCATCAGCCTCTCCACCGACTGCAACAAGTATATCATCTCTCTATGACTCCTCTCTCTCTCTCTCTATATATATATACACGCATATATCTCTTTATTTTTTACGTGCTATCTAAATACTCCCTCCGTTTCAGGTTATAAGACGTTTTAACTTTGGTTAAAGTTAAACTTCTCTAAGTTTAACTAATTCTGTAGAAAAAAGTAATAATATTTAAATACCATCATAGTTTCATTAAATCCATAATTGAATAAATTTTCATAATATATTTGTCATGGGTTAAAAAAGATACTACTTTTTTACTACAAAATCAGTAAAACTTACAGTATTTTAACTTTAACCAAAGTCAAAACGTCTTATAATCTAAAATGGAGCAATAGTTAATAAAAACTTTTACAAGTTAAGATAGATTACCATATGTGAGATATATCTCACTTCATAGACATAAAAGATTAAATTCAACTTATACAAGTTAAATTAAAAAACAAACTAAACTAACACTAGTTAACGTATTTTCGCTATTATATCTGTTATTATTGTTACAACTTGTACAAGTTTAATTTAAACATGTATATTTATGGACATGCATATTTAATATTAATCTATCTTATCATTTTGTTTTACTTTTTAATGGCTATTAAGGTGGGGGGATGAAAGCAACAATGAGATATTTCTCGAGATATGAAACATTTTCCCATAAAATAACTACCTATATATATGCATTTTTTTTCTTTGGTGCAGGGTCAGCTAG
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| CDS seq | ATGGCTGCAGTTAACTGCAAGGTGGTGGTCGCCGTGATTGTGGTGGCGATGGTGGTTGCGGCGCCGGGGGCGTCGGCGGCGATAACGTGCGGGCAGGTGGGATCGGCGATCGCGCCGTGCATCTCGTACGTGACGGGGAGGAGCGGCCTCACGCAGGGATGCTGCAACGGAGTGAAGGGGCTGAACAACGCCGCCCGCACCACCGCCGACCGCCAGGCGGCCTGCCGCTGCCTCAAGAGCCTCGCCGGCAGCATCAAGTCGCTCAACCTCGGCACCGTCGCCGGCGTCCCCGGCAAGTGCGGCGTCAACGTCGGCTTCCCCATCAGCCTCTCCACCGACTGCAACAAGGTCAGCTAG |
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| Protein seq | MAAVNCKVVVAVIVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTDCNKVS |
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| Function | Probable non-specific lipid-transfer protein 3 [UniProtKB/Swiss-Prot:Q84N29] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0014500 | OsMH63_11T0014500.1 | Chr11 | 761317 | 762382 | + | maker | ||
| CDS seq | ATGGCTGCAGTTAACTGCAAGGTGGTGGTCGCCGTGATTGTGGTGGCGATGGTGGTTGCGGCGCCGGGGGCGTCGGCGGCGATAACGTGCGGGCAGGTGGGATCGGCGATCGCGCCGTGCATCTCGTACGTGACGGGGAGGAGCGGCCTCACGCAGGGATGCTGCAACGGAGTGAAGGGGCTGAACAACGCCGCCCGCACCACCGCCGACCGCCAGGCGGCCTGCCGCTGCCTCAAGAGCCTCGCCGGCAGCATCAAGTCGCTCAACCTCGGCACCGTCGCCGGCGTCCCCGGCAAGTGCGGCGTCAACGTCGGCTTCCCCATCAGCCTCTCCACCGACTGCAACAAGGTCAGCTAG
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| Protein seq | MAAVNCKVVVAVIVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTDCNKVS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 248.800827 | 0 | 0.095122 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0116000 | SBH | 32.762730 | 30.514389 | 70.704391 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g02400 | SBH | 20.833406 | 19.083344 | 17.917612 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0116000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0001120 | RBH | 1.369527 | 0.0 | 14.955258 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0001160 | SBH | 3.432532 | 0.0 | 42.035145 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001140 | SBH | 7.679023 | 0.000000 | 58.632210 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001130 | SBH | 0.689854 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001150 | SBH | 55.302402 | 0.0 | 156.949142 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0016200 | RBH | 121.2734755 | 0.035307 | 0.073995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001150 | RBH | 0.994117 | 0.0 | 6.343716 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0016200 | RBH | 255.9675525 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001030 | RBH | 2.329806 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001130 | SBH | 44.296913 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001150 | SBH | 43.432896 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001130 | SBH | 13.811701 | 0.0 | 12.057741 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001180 | SBH | 0.808108 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001120 | RBH | 1.510429 | 0.0 | 3.862251 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001120 | SBH | 75.693802 | 0.0 | 185.052811 |
