Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g02340 | OGI:11002760 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:760919-762534 | ||||||||
| Gene Symbol | OsLTP1.20, OsLtpI.20, LTP1.20, OsLTPL14, LTPL14 | ||||||||||
| DNA seq | TATACCCTCCACCCATCGACCGACGATCCATCACCGGCGGCGACGATTAGCTATCTAGCTTAGCTACTCGATCATCAGATCATCGATCATCCGACGATCAAATCAGTAATCTTGAATATGGCGGCTTTGAACGGTAAGGTGGTGGTGGCGGTGATGGTGGTGGCGATGGTGGTGGCGGCGCCGGGAGCGTCGGCGGCGATCACGTGCGGTCAGGTGGGATCGGCGATCGCGCCGTGCATCTCGTACGTGACGGGGAGGAGCGGGCTGACGCAGGGATGCTGCAACGGCGTCAAGGGGCTGAACAACGCCGCCCGCACCACCGCCGACCGCCAGGCGGCCTGCCGCTGCCTCAAGAGCCTCGCCGGCAGCATCAAGTCGCTCAACCTCGGCACCGTCGCCGGCGTCCCCGGCAAATGCGGCGTCAACGTTGGCTTCCCCATCAGCCTCTCCACCGACTGCAACAAGTATATCATCTCTCTTTATTATGACGTCCCCCCCCTCTCTCTCTATATATATACACACATATATCTCTTTATTTTTTAGTGCTATCTAAATACTCCTCCGTTTCAGGTTATATGACGTTTTAACTTTGGTTAAAGTCAAACTACTCTAAGTTGAACTAATTCTATAGAAAAGTAATAATATTTACAATACCAGCATAGTTTCATTAAATCTATAATTGAATAATTTTTCATAATATACTTGTCTTGGGTTAAAAATGTTACTACTTTTTTTCTACAAAATCAGTCAAACTTATAATAGTTCGACTTTGACTAAAGTCAAAACGTCTTATAACCTGAAACGGAGTAATAGTTAATAAAAACTTTTACAAGTTAAAATAGATTATCATATGTGAGATATATCTCACTTCATAGACATAAAAGATTAAATTCAACTTATACAAGTTAATTAGAAAAACAACAAACTAAACTAACACTACTTAACGTATTTTCGCTATTATATCCGTTATTTTTGTTGCAAGTACAAGTTAAATTTAAACATGTATATTTACGGACATGTATATTAATATTAATCTAGCTTATCATTTTGTTTTACTTTTTAATGGCTATTTAGGTGGGGGGCATGAAAGCAACAATGAGATATTTCTCGAGATATGAAACATTTTCCCATAAAATAACTAACTTTCTATATATGTGCATTTTTTTCTTTGGTGCAGGGTCAGTTAAATCAATCCTGCTTGGATCGATCGATCGAGCTTAACATGCTAGCTCAATCGGAGTTGATCAGCTAGTAATTAAGCACGTACTTGCTACAGCATATATGAACAAAGTAATTAAAATAACAGCTGCGGCAGACATGCAGCGCTCCATTCTCTCTCTGTATCAGCTGTATACTTTATGTTGCACGCTCCCTGTGTGCATGTTCTATCTTAATTTTCTTCAGTATGTACACGATCTGTGCGTACGTGTAATCCTATACGTTTTATGAATTGCATGTTGTCCAAATGTCTTGGTCCTAGCTACTAGCTACTCCAGCTTCTTGCTGAGGAAATCTGCAGTAGTAGTACTCCCTCGTTGTGATACGCAACAAAATTGTTTAATGTGATCTTGCTATATATAGAAAATCATCTCTATTATTTTACAGGCATAAAACAA
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| CDS seq | ATGGCGGCTTTGAACGGTAAGGTGGTGGTGGCGGTGATGGTGGTGGCGATGGTGGTGGCGGCGCCGGGAGCGTCGGCGGCGATCACGTGCGGTCAGGTGGGATCGGCGATCGCGCCGTGCATCTCGTACGTGACGGGGAGGAGCGGGCTGACGCAGGGATGCTGCAACGGCGTCAAGGGGCTGAACAACGCCGCCCGCACCACCGCCGACCGCCAGGCGGCCTGCCGCTGCCTCAAGAGCCTCGCCGGCAGCATCAAGTCGCTCAACCTCGGCACCGTCGCCGGCGTCCCCGGCAAATGCGGCGTCAACGTTGGCTTCCCCATCAGCCTCTCCACCGACTGCAACAAGGTCAGTTAA |
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| Protein seq | MAALNGKVVVAVMVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTDCNKVS |
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| Function | Probable non-specific lipid-transfer protein 3 [UniProtKB/Swiss-Prot:Q84N29] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g02340 | LOC_Os12g02340.1 | Chr12 | 760919 | 762534 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCTTTGAACGGTAAGGTGGTGGTGGCGGTGATGGTGGTGGCGATGGTGGTGGCGGCGCCGGGAGCGTCGGCGGCGATCACGTGCGGTCAGGTGGGATCGGCGATCGCGCCGTGCATCTCGTACGTGACGGGGAGGAGCGGGCTGACGCAGGGATGCTGCAACGGCGTCAAGGGGCTGAACAACGCCGCCCGCACCACCGCCGACCGCCAGGCGGCCTGCCGCTGCCTCAAGAGCCTCGCCGGCAGCATCAAGTCGCTCAACCTCGGCACCGTCGCCGGCGTCCCCGGCAAATGCGGCGTCAACGTTGGCTTCCCCATCAGCCTCTCCACCGACTGCAACAAGGTCAGTTAA
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| Protein seq | MAALNGKVVVAVMVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTDCNKVS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g02340 | LOC_Os12g02340.2 | Chr12 | 760919 | 762440 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCTTTGAACGGTAAGGTGGTGGTGGCGGTGATGGTGGTGGCGATGGTGGTGGCGGCGCCGGGAGCGTCGGCGGCGATCACGTGCGGTCAGGTGGGATCGGCGATCGCGCCGTGCATCTCGTACGTGACGGGGAGGAGCGGGCTGACGCAGGGATGCTGCAACGGCGGTCAGTTAAATCAATCCTGCTTGGATCGATCGATCGAGCTTAACATGCTAGCTCAATCGGAGTTGATCAGCTAG
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| Protein seq | MAALNGKVVVAVMVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRSGLTQGCCNGGQLNQSCLDRSIELNMLAQSELIS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 17.876951 | 20.041870 | 36.037876 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0115500 | RBH | 32.642609 | 37.090652 | 171.292053 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g02400 | SBH | 20.833406 | 19.083344 | 17.917612 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0115500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000960 | SBH | 5.517438 | 0.0 | 34.921013 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001170 | SBH | 7.617239 | 0.0 | 76.074158 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001180 | SBH | 24.517052 | 0.0 | 120.651939 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001000 | SBH | 2.350385 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001130 | SBH | 379.719330 | 8.934269 | 266.842957 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0014500 | SBH | 248.800827 | 0 | 0.095122 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001150 | RBH | 0.994117 | 0.0 | 6.343716 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0014300 | RBH | 139.438591 | 0.05907 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001030 | RBH | 2.329806 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001130 | SBH | 44.296913 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001130 | SBH | 226.499939 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001130 | SBH | 13.811701 | 0.0 | 12.057741 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001160 | SBH | 10.740695 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001120 | RBH | 1.510429 | 0.0 | 3.862251 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002330 | SBH | 17.506363 | 0.0 | 238.453644 |
