Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0001180 | OGI:12002840 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:798289-802093 | ||||||||
| Gene Symbol | OsLTP1.20, OsLtpI.20, LTP1.20, OsLTPL14, LTPL14, OsLTP1.13, OsLtpI.13 | ||||||||||
| DNA seq | tataccctccacccatcgaccgacgatccatcaccggcggcgacgattagctatctagcttagctactcgatcatcagatcatcgatcatccgacgatcaaatcagtaatcttgaatatggcggctttgaacggtaaggtggtggtggcggtgatggtggtggcgatggtggtggcggcgccgggagcgtcggcggcgatcacgtgcggtcaggtgggatcggcgatcgcgccgtgcatctcgtacgtgacggggaggagcgggctgacgcagggatgctgcaacggcgtcaaggggctgaacaacgccgcccgcaccaccgccgaccgccaggcggcctgccgctgcctcaagagcctcgccggcagcatcaagtcgctcaacctcggcaccgtcgccggcgtccccggcaaatgcggcgtcaacgttggcttccccatcagcctctccaccgactgcaacaagtatatcatctctctttattatgacgtcccccccctctctctctatatatatacacacatatatctctttattttttagtgctatctaaatactcctccgtttcaggttatatgacgttttaactttggttaaagtcaaactactctaagttgaactaattctatagaaaagtaataatatttacaataccagcatagtttcattaaatctataattgaataatttttcataatatacttgtcttgggttaaaaatgttactactttttttctacaaaatcagtcaaacttataatagttcgactttgactaaagtcaaaacgtcttataacctgaaacggagtaatagttaataaaaacttttacaagttaaaatagattatcatatgtgagatatatctcacttcatagacataaaagattaaattcaacttatacaagttaattagaaaaacaacaaactaaactaacactacttaacgtattttcgctattatatccgttatttttgttgcaagtacaagttaaatttaaacatgtatatttacggacatgtatattaatattaatctagcttatcattttgttttactttttaatggctatttaggtggggggcatgaaagcaacaatgagatatttctcgagatatgaaacattttcccataaaataactaactttctatatatgtgcatttttttctttggtgcagggtcagttaaatcaatcctgcttggatcgatcgatcgagcttaacatgctagctcaatcggagttgatcagctagtaattaagcacgtacttgctacagcatatatgaacaaagtaattaaaataacagctgcggcagacatgcagcgctccattctctctctgtatcagctgtatactttatgttgcacgctccctgtgtgcatgttctatcttaattttcttcagtatgtacacgatctgtgcgtacgtgtaatcctatacgttttatgaattgcatgttgtccaaatgtcttggtcctagctactagctactccagcttcttgctgaggaaatctgcagtagtagtactccctcgttgtgatacgcaacaaaattgtttaatgtgatcttgctatatatagaaaatcatctctattattttacaggcataaaacaagcccactctaaaaacaattagtgcagccggttgtcttaatagacccgtatgtgaaaatcgttttttacgagcggttccttaagacaacttcatgtatcattatcgtagtatgtcaaaaaagatgcaccacactatgcacagtcgtacaaaatggcactactacacaactgatattttatcgggatacccatttcggttagatttagaacgggtactagagatatttttaagtaccggttctaaaagtccaagtacaaaaacatctttaattccggttggtgttacaaccggtactaaagatgtctacagggttagtttaaaaagaaagcatccatatccatgtctgatgggtggagttggtggatggttacacgcgtgagggctgaggtgagagatcttgagttcgaatcacatatcctacacattttttttatttcgtatgcatctttagtaccagttatttcaaccggtactaaagatcgagatatttagtctcgatttgttagtaccggttctacatccgatactaaaaacggttcccaactggtgttagaaatgggttctccactagtgtggcaatacatttacattcacacattaagaattcacattgtcacccatattcacattgacactgtcttttaaagtataatttaaatgttcacattgtgaatattcgacaatgatagggagcccaatccctatctacaagtctaaacctaaaattaatttgatcgacatgagctaatgaatagataagcgcactatctattgcttgaaatggtagatccattaatttccttttcatatatagattgtaaaaagttgtcgttggctgattggaaatagacttgggcatgaaacctataccctctgcaactccacgtaatcgaaaatcatcctggaatagaccccaaggatgaaatttagaccaaggaacgaaattgggcatctataagtgtgttgggagacaaaaataaacggtttcatagagttaaatgatcaaagttggaacaatattgcaatagttgatgattaaattaattaatgtggacttctctaaaccatatataggctgtgttcggcagccctgttcccaacactaacagtacgcacgaaaaacggagcggtccattagcgcgtgattaattaagtattagctaattttttaaaaaaaaatgaattaatttgatttttttcaaacaactttcgtatagaaactttttgtaaaaaacacaccgtttagcagtttaaaaaatgtgcgcgcgaaaaacgagagaggaggttgggaaaaggggtgccaaacatagcctgtattgtgcgccagatactggtaagggcattgttgttcatcctcgaaagtggcacaaatataaatacgacattatttcttacacgaaaacgaaacagggaaaactaatttaacaaatagagacatatgtagcgctgccgctagctagctttcagagtccactttttgagagagctcaatccaatgtgtggtttggctgcagcgacgaaccagaataatctcactctgctggtgcacccaatccaatcaccaaatccaaaggaaattcaatgtacaacaaaattaaaaagaacatcttataatttgtctcctcctcctgcatatgcttgagctatactagcttaactagaggtaccagccagccatgcggcggctggttgacgtcgtggaggcgccggcgctggtgctgacgccggcatgggcggccacggcctccatgcagcaggccggcgggagctccggcgccttggacgccaacatggtcatcgtcctcgccgcgctgctctgcgtcgtcatctgctccctcggcctcagctccctcatccgctgcgcgctccactgcgcccgcggcctctcaccctcacccgccatggcgacgccggcagctgccaccaccacgggcgggctgaagaagaaggagctgaggaggattacggtggaggtgtacggcgccaagcaggccggcgtccccgacgccgagtgcgccatctgcctgggcgacttcgccgacggcgacaaggtgcgcgtgctccccaggtgccaccacggcttccacgtcggctgcatcgacacgtggctcgccgcgcacacgtcctgccctacttgccgggactccattctctccgtccatgccggagtcaccggcggccaaacatag
More
|
||||||||||
| CDS seq | atggcggctttgaacggtaaggtggtggtggcggtgatggtggtggcgatggtggtggcggcgccgggagcgtcggcggcgatcacgtgcggtcaggtgggatcggcgatcgcgccgtgcatctcgtacgtgacggggaggagcgggctgacgcagggatgctgcaacggcgtcaaggggctgaacaacgccgcccgcaccaccgccgaccgccaggcggcctgccgctgcctcaagagcctcgccggcagcatcaagtcgctcaacctcggcaccgtcgccggcgtccccggcaaatgcggcgtcaacgttggcttccccatcagcctctccaccgactgcaacaagtaccagccagccatgcggcggctggttgacgtcgtggaggcgccggcgctggtgctgacgccggcatgggcggccacggcctccatgcagcaggccggcgggagctccggcgccttggacgccaacatggtcatcgtcctcgccgcgctgctctgcgtcgtcatctgctccctcggcctcagctccctcatccgctgcgcgctccactgcgcccgcggcctctcaccctcacccgccatggcgacgccggcagctgccaccaccacgggcgggctgaagaagaaggagctgaggaggattacggtggaggtgtacggcgccaagcaggccggcgtccccgacgccgagtgcgccatctgcctgggcgacttcgccgacggcgacaaggtgcgcgtgctccccaggtgccaccacggcttccacgtcggctgcatcgacacgtggctcgccgcgcacacgtcctgccctacttgccgggactccattctctccgtccatgccggagtcaccggcggccaaacatag
More
|
||||||||||
| Protein seq | MAALNGKVVVAVMVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTDCNKYQPAMRRLVDVVEAPALVLTPAWAATASMQQAGGSSGALDANMVIVLAALLCVVICSLGLSSLIRCALHCARGLSPSPAMATPAAATTTGGLKKKELRRITVEVYGAKQAGVPDAECAICLGDFADGDKVRVLPRCHHGFHVGCIDTWLAAHTSCPTCRDSILSVHAGVTGGQT |
||||||||||
| Function | RING-H2 finger protein ATL73 [UniProtKB/Swiss-Prot:Q9FLC6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0001180 | OsCMeo_12g0001180.01 | Chr12 | 798289 | 802093 | + | NAM | ||
| CDS seq | atggcggctttgaacggtaaggtggtggtggcggtgatggtggtggcgatggtggtggcggcgccgggagcgtcggcggcgatcacgtgcggtcaggtgggatcggcgatcgcgccgtgcatctcgtacgtgacggggaggagcgggctgacgcagggatgctgcaacggcgtcaaggggctgaacaacgccgcccgcaccaccgccgaccgccaggcggcctgccgctgcctcaagagcctcgccggcagcatcaagtcgctcaacctcggcaccgtcgccggcgtccccggcaaatgcggcgtcaacgttggcttccccatcagcctctccaccgactgcaacaagtaccagccagccatgcggcggctggttgacgtcgtggaggcgccggcgctggtgctgacgccggcatgggcggccacggcctccatgcagcaggccggcgggagctccggcgccttggacgccaacatggtcatcgtcctcgccgcgctgctctgcgtcgtcatctgctccctcggcctcagctccctcatccgctgcgcgctccactgcgcccgcggcctctcaccctcacccgccatggcgacgccggcagctgccaccaccacgggcgggctgaagaagaaggagctgaggaggattacggtggaggtgtacggcgccaagcaggccggcgtccccgacgccgagtgcgccatctgcctgggcgacttcgccgacggcgacaaggtgcgcgtgctccccaggtgccaccacggcttccacgtcggctgcatcgacacgtggctcgccgcgcacacgtcctgccctacttgccgggactccattctctccgtccatgccggagtcaccggcggccaaacatag
More
|
|||||||
| Protein seq | MAALNGKVVVAVMVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTDCNKYQPAMRRLVDVVEAPALVLTPAWAATASMQQAGGSSGALDANMVIVLAALLCVVICSLGLSSLIRCALHCARGLSPSPAMATPAAATTTGGLKKKELRRITVEVYGAKQAGVPDAECAICLGDFADGDKVRVLPRCHHGFHVGCIDTWLAAHTSCPTCRDSILSVHAGVTGGQT
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0001180 | OsCMeo_12g0001180.02 | Chr12 | 798318 | 799861 | + | IsoSeq | ||
| CDS seq | atgaacaaagtaattaaaataacagctgcggcagacatgcagcgctccattctctctctgtatcagctgtatactttatgttgcacgctccctgtgtgcatgttctatcttaattttcttcagtatgtacacgatctgtgcgtacgtgtaatcctatacgtt |
|||||||
| Protein seq | MNKVIKITAAADMQRSILSLYQLYTLCCTLPVCMFYLNFLQYVHDLCVRVILYV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr12 | 798752 | 802093 | + | OsCMeo_12g0001180.02 | OsCMeo_12g0001180.02,OsCMeo_12g0001180.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 24.517052 | 0.0 | 120.651939 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0115500 | RBH | 32.642609 | 37.090652 | 171.292053 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02350 | RBH | 0.948078 | 0.895285 | 0.512447 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0115500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000960 | RBH | 5.517438 | 0.0 | 34.921013 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001170 | RBH | 7.617239 | 0.0 | 76.074158 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001110 | SBH | 30.738365 | 0.0 | 60.309986 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001000 | RBH | 2.350385 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001130 | SBH | 379.719330 | 8.934269 | 266.842957 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0014500 | SBH | 248.800827 | 0 | 0.095122 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001150 | SBH | 0.994117 | 0.0 | 6.343716 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0014400 | RBH | 2.8697195 | 0.1656175 | 0.071763 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000980 | RBH | 7.257802 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001130 | SBH | 44.296913 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001130 | SBH | 226.499939 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001100 | RBH | 19.479420 | 0.0 | 38.733665 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002200 | RBH | 4.901183 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001120 | RBH | 1.510429 | 0.0 | 3.862251 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002330 | RBH | 17.506363 | 0.0 | 238.453644 |
