Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0001110 | OGI:11002760 | 14/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:751672-752559 | ||||||||
| Gene Symbol | OsLTP1.12, OsLtpI.12 | ||||||||||
| DNA seq | AGCATCTTCCTATTTATACCCTCCACCCATCGACCGACGATCCATCGATCACCGGCGACGAGAGACACTCTCACTGAACGAAGCTACCTAGCTTAATTACCTAGCTACTCGATCGATCATCAGTCTAGATATGGCGGCTTTGAACGGTAAGGTGGTGGTGGCGGTGATGGTGGTGGCGATGGTGGTGGCGGCGCCGGGGGCGTCGGCGGCGATCACGTGCGGGCAGGTGGGGTCGGCGATCGCGCCGTGCATCTCGTACGTGACGGGGAGGGGCGGCCTCACCCAGGGATGCTGCAACGGCGTCAAGGGGCTGAACAACGCCGCCCGCACCACCGCCGACCGCCAGGCCGCCTGCCGGTGCCTCAAGACCCTCGCCGGCACCATCAAGTCTCTCAACCTCGGCGCCGCCGCCGGCATCCCCGGCAAGTGCGGCGTCAACGTCGGCTTCCCCATCAGCCTCTCCACTGACTGCAGCAAGTAAATTAATCATCCATGCATATGCATGCTACTTTTTTTCAAGTTAATTCAACTTAATTTACTGACTAATCCACTGTATATATGCATGATTATTTCATTGGTGCAGGGTCAGCTAGATCGATTAATCCTGCTTGGACCGACCGATCGATATATCGATCGATGCTGGCTCGCAGTTGATCAACTAGCCAAAATAATAGCTACAGTAAAAATAACAGCTGGGGCATATCAATGCAGCGCTGGTCATCTCTCTCTCTATCTCTGTATACTTTATGTTGCACGCTCCGTGCGTGCATGCTATCTTAATTTTCTTGACTCTGTACACCGCTCTGTGTACGTGTAATCCTACGTTGATGAATTGCATCTTGTCCAGACTTGGACCTAGCTAACTACGTACTCCAGCTTGGCAGCTTC
More
|
||||||||||
| CDS seq | ATGGCGGCTTTGAACGGTAAGGTGGTGGTGGCGGTGATGGTGGTGGCGATGGTGGTGGCGGCGCCGGGGGCGTCGGCGGCGATCACGTGCGGGCAGGTGGGGTCGGCGATCGCGCCGTGCATCTCGTACGTGACGGGGAGGGGCGGCCTCACCCAGGGATGCTGCAACGGCGTCAAGGGGCTGAACAACGCCGCCCGCACCACCGCCGACCGCCAGGCCGCCTGCCGGTGCCTCAAGACCCTCGCCGGCACCATCAAGTCTCTCAACCTCGGCGCCGCCGCCGGCATCCCCGGCAAGTGCGGCGTCAACGTCGGCTTCCCCATCAGCCTCTCCACTGACTGCAGCAAGGTCAGCTAG |
||||||||||
| Protein seq | MAALNGKVVVAVMVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS |
||||||||||
| Function | Non-specific lipid-transfer protein 3 [UniProtKB/Swiss-Prot:Q43766] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0001110 | OsCMeo_11g0001110.01 | Chr11 | 751672 | 752559 | + | NAM | ||
| CDS seq | ATGGCGGCTTTGAACGGTAAGGTGGTGGTGGCGGTGATGGTGGTGGCGATGGTGGTGGCGGCGCCGGGGGCGTCGGCGGCGATCACGTGCGGGCAGGTGGGGTCGGCGATCGCGCCGTGCATCTCGTACGTGACGGGGAGGGGCGGCCTCACCCAGGGATGCTGCAACGGCGTCAAGGGGCTGAACAACGCCGCCCGCACCACCGCCGACCGCCAGGCCGCCTGCCGGTGCCTCAAGACCCTCGCCGGCACCATCAAGTCTCTCAACCTCGGCGCCGCCGCCGGCATCCCCGGCAAGTGCGGCGTCAACGTCGGCTTCCCCATCAGCCTCTCCACTGACTGCAGCAAGGTCAGCTAG
More
|
|||||||
| Protein seq | MAALNGKVVVAVMVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0001110 | OsCMeo_11g0001110.02 | Chr11 | 751715 | 752536 | + | IsoSeq | ||
| CDS seq | ATGGCGGCTTTGAACGGTAAGGTGGTGGTGGCGGTGATGGTGGTGGCGATGGTGGTGGCGGCGCCGGGGGCGTCGGCGGCGATCACGTGCGGGCAGGTGGGGTCGGCGATCGCGCCGCCGGCATCCCCGGCAAGTGCGGCGTCAACGTCGGCTTCCCCATCAGCCTCTCCACTGACTGCAGCAAGGTCAGCTAGATCGATTAATCCTGCTTGGACCGACCGATCGATATATCGATCGATGCTGGCTCGC
More
|
|||||||
| Protein seq | MAALNGKVVVAVMVVAMVVAAPGASAAITCGQVGSAIAPPASPASAASTSASPSASPLTAARSARSINPAWTDRSIYRSMLAR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 30.738365 | 0.0 | 60.309986 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0116000 | RBH | 32.762730 | 30.514389 | 70.704391 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g02400 | RBH | 20.833406 | 19.083344 | 17.917612 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0116000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0001100 | RBH | 13.811121 | 0.0 | 54.836964 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0001140 | RBH | 13.196087 | 0.0 | 29.267920 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001170 | RBH | 29.274427 | 0.0 | 32.205750 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001110 | RBH | 3.231797 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001130 | RBH | 379.719330 | 8.934269 | 266.842957 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0014300 | RBH | 46.0222835 | 0 | 0.500598 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001130 | RBH | 14.126581 | 0.0 | 32.677025 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0016100 | RBH | 228.097267 | 0.0522285 | 0.00758 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001010 | RBH | 13.180790 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001130 | SBH | 44.296913 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001130 | RBH | 226.499939 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001130 | SBH | 13.811701 | 0.0 | 12.057741 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001160 | RBH | 10.740695 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001100 | RBH | 14.322742 | 0.0 | 15.171124 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001120 | SBH | 75.693802 | 0.0 | 185.052811 |
