Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0006270 | OGI:08015860 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:5642080-5648604 | ||||||||
| Gene Symbol | SHR5, - | ||||||||||
| DNA seq | aattttacttctctcgttgcctcaatcaatgcgagtttgatcatttttaatcgatcgatgcagtggcggcgctggaggcgatcctggggagatggaacaagaccaattcgccggtgtggagcatgagcggcgagccatgccgcggcgtccccgtcgacggcgtcaccggcctcgacggcaaccccaagaacaaccccggcatcaagtgcgactgctcctacatcaacggcaccgtctgccatatcacccagctgtaagtgttactatgttttttctggttcttgtttgcatgcacgccaggtgctcgacgcagtgcctacaagagaggccatggcgtctggaatctggatatatgagttcttgtggaaactaacttggaagtgcaactttgcaagaccaccactgcaactatgcataggtttcacttgggagtaactttttttatgtcgccaaataactgctctgctgttcaaatttcaccatgatcactacttggagtaattagagtaaattattttttgTttttacccctcgaacttgcgaaaccaggttaatctgggaccttggtcactggtcagtagtgaaatctgaggttgacaacacatctgtacacaactagctaacgcccactgttttctgccctcttctctctacaagctacaatcacgagtgaaaattggacctaagcAGagtttcagtaaccaaccagacatggacatgcttgttgggctgtgtatgtgtgttagtggcgcatgagtatggtaacatactaacatttgtgcatgtatatttggagtaaacagcaagaattttcgtacttatttccaatttttcttactccttgtttatgtaattcaggaaggtatacgccttgaacgttgtcggtcagatacctgcagaattacagaacctcacctacctaaattacctgtatggtatctaactcttatcagctctgcctagatgctgaaacaactgtaggatatgtattaatatcttgcagcaagccagcaaattcaaattcaaacccatgtttgaaattctttgctgctaatgactggatgtttctggtgctgtttcagggacctggatcaaaattacttgtcaggccccataccatcattcatagggcaattgactgccttgacagaattgtaggagttatagttcaagttttatgttcttgcagtattaatcagttgatgtgttgtctgaaccatccttcgttcttttgtgtaaaaaaaaataggcatgtgggattcaatgcactctcaggaccaattccgaaggaacttgggaatctcacgaacctcaacttgctgtaagagatctcttcttgTAtacctggtcagttttcaactatagattaatgttggtacaaagtatttaattatatagaaaaatccaaatccagaacattttagaaaattctaaaattcataacttacatatataggcacctcagtgtaatttcacttttcaactggtgtttcatatgttcgaatgaaatccaaaatgcaaaaattgtggatcaaaagggtgtgtttggggtttcgaaagtggatgcctgttcgaggaaaactaaaaggctcatcagggcaaacaatgcccgttttctcagctagtagcatagcatgcaaataaattatatcactcctgaaatatttcttttgtttcagaggcatcagtttgaccaattttactggtcaacttcctgaagaattgggcaacctgaccaaacttcaacgattgtaagtttgtaagccccctctttctaacttgacagatgctacttctagaagaacaaagtttaatttggaccagcaagatacctattgttgaacatgcatgattgttgcatttcattaataacaggtacactgatagtgctggcttgagtggtccattCccttcaacgttctcaaagcttaagaacctgaagctcctgtacgttcaagaacagagccacagttgtcatgttcattttgttttcaTatgctcaacatcaaacatgtttttgtgcttgtaggcgggcatcagataacgattttacaggaaaaatacctgattatattgggagcttgactaaTttggaagatctgtaagagtaatttttaactttttatcacatcaatgattttatcctattcacaagacaagtggaactgcaacagaaattttctgcatatgttgtttccaattgaattcgaactgtagcgtgttttttttcttttaagtcatcactatgaacagaaatgtgcatacctgtatgccattactctggtcccaacagtgtcttaatatgtagaggttactttttctaatattcaaataaacttggcattttcatacttttttcttaaattatgaactcacagggctttccaaggaaattcttttgaaggaccgattccggaaagtttgtctaatctaaccaaattgacaaccttgtaagtactttgttctatggcaacattgccatcccctcttgtcatgatgactgatgtgctaaatacaaatgagcagacggattggagatattgtaagtgggagctcttcatttgcctttgtcagtagtctgacgtctttgaatatcctgtatgtgacacttaaattctaactatacatcttgcaatttTAtatattgacaaagtaataacttgctaataccgaatacTttttacagtgtattgaggaactgcaggatatctggagaccttggagcagtagacttttcaaagttcacaaaattagccttcctgtacgtttttcattatgggtcatagcacaatccatgaaactcttggtgttttttctgaaatttcatgtgaagtgtctgttcaagtatgctgtcttgtggcacagggacttgagttttaacaatatctcgggcaaagttcctcaatcaattctgaatctacaaatgcttacagacctgtaaggaattctttctggaggttattacatctacagaaacatatgttatattgatgaccatgtttcatcatcttgtattctacccaattcaggtttcttgggaacaatagcctaacaggaggactgccagatgggataagcccttcactaaaaaacttgtgtgtaaacaattcaacattgcagtacagctaaaattagaatgatgcatttatTTCATAtttgcagagatttttcatacaaccagctcactggaagctttccctcctgggctacccagaacaacttgcaattgtaagtagaaagatctcaaatttgtgttggcaaggggAAaaaaaattgttatgttcaacgcttcaattattaccaggaatttggtggcaaacaactttgatcttggcagcaccaacaacgggtacttatgacatttggcTAtacttccataagtgtttaatattaacaattttttctcacaacttttttcaagtcaattatgtccacagtattctacctccagggctaaactgcctccagaaagacactccatgtttacgaggttctccagaatgtatgtctcgctcttccttaaccatagtagttggtatataggattttgaaatgtttatactattcataattttgcacatcttaactgcagattattcctttgcggtagactgtggtagtaacagatctatcagaggctcagataaTACtatgtatgaattggatttcacagaccttggcagctcatcatattacgttaccagtgaaacaagatGgggtgttagcaatgtaggaaaatatttccagtctccaaatgacagtaagatcatatatagcaatgagaagattcagaatgcagtggtttcagaactactccaaactgcaaggatgtcaccatcgtctctgagatactttggccttggacttgagaatggaaattacactgttctgcttcaatttgcagagttaggttatccagactcaccaacttggaaaagcttaggaaggagagtttttgacatatatatccaggtacaaattgagtgcattgtatggtaatttctattctccttataaaagggactagtgGTggtggtggttctgctaccaccccacaaccaattcctaacttttcttgaagagaaaaaagaatAaaatactcctaacaactctctaatttttgcgggaatgaaaaaaggacaacgtggggccaaagggtccacatgtcagtaacagatttgTacagcaattaagagatgataataacgggttaatgataattttctttaattaaaaataccgttacaatgcacgggcaatatgctagtgtttactaaaagcaaaaacagaaaaaaatatttactggatccttttcttctttatctgattgtattattgacatttttatagggtgacctaaaagaaaaggacttcgatataaggaagatggctggtggaaaatctttcactgctgtttacaagagttacacggcaactgtgtcgaaaaacttcctcgaaatccatctgttctgggctggaaagggcacttgttgcattcctattcaaggttactacgggccattgatctcagcattaagcatcactccaagtaagcctaatcattaaggtaacctcaagaaggattatattgccttctagtaaatgaaatctctgtttcagattttactcctactgtgcgaaacggtgtacccaaaaggaaaagtaaagaaggtgcaattgctggaatatcgattggtgcctcagttgtaggattagcagccctatttggaatatttatgttcataaagaagagaagaagacttgcacaacagcaaggaggtaaatatttttattatacaggaattcagacaacaaaattttcaaatgatttattctttctggtgtgcgctggtgtctacagaactgtacaacctagttggacggcctgatgtcttcagtaatgctgaactcaagttagctacaaataattacagttcccAaaacattcttggggaaggtggatatggaccagtctataaggttgtctattttccctaatttaatactgtgaaattgcaattgaataattatctgatctgtattaaATatagatttcttgcaaacttgttggtctaccctcaaaatataaatgtaacgtaagtaaagttcttcctttggcagggtatgctacctgatggaagagttatagctgtaaaacaactttctcaatcatcccatcaggggaaaaaccagtttgtgacagaggttgcaacaatttcttctgtgcaacaccggaatcttgtcaaattgcatggttgttgcattgacagtaatacacctttgttagtttatgagtaccttgaaaatggaagcctagatcaagcactcttcagtgagttcaagtctgctcataaccaacagtgcaaaattgtattttatattttgggaaatttcttctcttcaTtttttcatcatttgaattctcaagaccttaaagtcatttctgcttgtacagggaagaatagcttaaaactggactgggcaactcgcttcgagatcattttaggaatcgcaagaggactaacttatcttcatgaggagtcaagtgtgcgcattgtgcatagggacatcaaggccagcaatgtcctacttgacaccgacctcaccccaaagatatcagactttggactcgctaggctctatgatgagaagaagactcatgtcagcacggggattgcgggcacattgtaagcacatttcaccatttctcttgtggttgtcctctaaaatgAaagctaactAaaacttgtctaaccttttgtcaagtggttatctggctcctgagtatgcaatgagacgtcatttgactgaaaaggttgatgtttatgcattcGgggtggtcgcattagagactgtcgctggtcgatcgaacactaataactccatcgaggaaagcaagatctatctcttagagtgggtaagttgatcaatgctccatcctcaaacaacacactaatctattcatgtatatgatgttttgattattgaagctatacctatgttaatttacaggcctGggacctgtacgaaaaggagcaagcacaaagaatcgttgatccaagacttgaggatttcaataaagatgaagttctcagagtcattcatgttgcgctcctctgcacacagggctcaccaaatcagcgaccgccaatgtcgagggtcatggcagtgctcactggagatgctgaggtagttgagacggtgacgaaaccgagctacatcactgagtggcaatatagagatggaaacagcaccaactcggaatctaccacctcagagttcagcaggcagaaagagatcgaccctctcaccttgtCGccaacaatcaccggatctagtcatgatggaaggtgaatgctgcaacctgcaggtgatcttggtttgaaacgattgtatgtaaatgtgagacgagctaatagcggaacttaattattctgaagtatgtatgatgataaaagtatttactccttgtaatttgtaacaggtcaaatagagaggtatcctagtatatatctttgaaattaa
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| CDS seq | atgagcggcgagccatgccgcggcgtccccgtcgacggcgtcaccggcctcgacggcaaccccaagaacaaccccggcatcaagtgcgactgctcctacatcaacggcaccgtctgccatatcacccagctgaaggtatacgccttgaacgttgtcggtcagatacctgcagaattacagaacctcacctacctaaattacctggacctggatcaaaattacttgtcaggccccataccatcattcatagggcaattgactgccttgacagaattgcatgtgggattcaatgcactctcaggaccaattccgaaggaacttgggaatctcacgaacctcaacttgctaggcatcagtttgaccaattttactggtcaacttcctgaagaattgggcaacctgaccaaacttcaacgattgtacactgatagtgctggcttgagtggtccattCccttcaacgttctcaaagcttaagaacctgaagctcctgcgggcatcagataacgattttacaggaaaaatacctgattatattgggagcttgactaaTttggaagatctggctttccaaggaaattcttttgaaggaccgattccggaaagtttgtctaatctaaccaaattgacaaccttacggattggagatattgtaagtgggagctcttcatttgcctttgtcagtagtctgacgtctttgaatatccttgtattgaggaactgcaggatatctggagaccttggagcagtagacttttcaaagttcacaaaattagccttcctggacttgagttttaacaatatctcgggcaaagttcctcaatcaattctgaatctacaaatgcttacagacctgtttcttgggaacaatagcctaacaggaggactgccagatgggataagcccttcactaaaaaacttgtgtagatttttcatacaaccagctcactggaagctttccctcctgggctacccagaacaacttgcaattggtgacctaaaagaaaaggacttcgatataaggaagatggctggtggaaaatctttcactgctgtttacaagagttacacggcaactgtgtcgaaaaacttcctcgaaatccatctgttctgggctggaaagggcacttgttgcattcctattcaaggttactacgggccattgatctcagcattaagcatcactccaaattttactcctactgtgcgaaacggtgtacccaaaaggaaaagtaaagaaggtgcaattgctggaatatcgattggtgcctcagttgtaggattagcagccctatttggaatatttatgttcataaagaagagaagaagacttgcacaacagcaaggagaactgtacaacctagttggacggcctgatgtcttcagtaatgctgaactcaagttagctacaaataattacagttcccAaaacattcttggggaaggtggatatggaccagtctataaggttgatgtttatgcattcGgggtggtcgcattagagactgtcgctggtcgatcgaacactaataactccatcgaggaaagcaagatctatctcttagagtgggcctGggacctgtacgaaaaggagcaagcacaaagaatcgttgatccaagacttgaggatttcaataaagatgaagttctcagagtcattcatgttgcgctcctctgcacacagggctcaccaaatcagcgaccgccaatgtcgagggtcatggcagtgctcactggagatgctgaggtagttgagacggtgacgaaaccgagctacatcactgagtggcaatatagagatggaaacagcaccaactcggaatctaccacctcagagttcagcaggcagaaagagatcgaccctctcaccttgtCGccaacaatcaccggatctagtcatgatggaaggtga
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| Protein seq | MSGEPCRGVPVDGVTGLDGNPKNNPGIKCDCSYINGTVCHITQLKVYALNVVGQIPAELQNLTYLNYLDLDQNYLSGPIPSFIGQLTALTELHVGFNALSGPIPKELGNLTNLNLLGISLTNFTGQLPEELGNLTKLQRLYTDSAGLSGPFPSTFSKLKNLKLLRASDNDFTGKIPDYIGSLTNLEDLAFQGNSFEGPIPESLSNLTKLTTLRIGDIVSGSSSFAFVSSLTSLNILVLRNCRISGDLGAVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLKNLCRFFIQPAHWKLSLLGYPEQLAIGDLKEKDFDIRKMAGGKSFTAVYKSYTATVSKNFLEIHLFWAGKGTCCIPIQGYYGPLISALSITPNFTPTVRNGVPKRKSKEGAIAGISIGASVVGLAALFGIFMFIKKRRRLAQQQGELYNLVGRPDVFSNAELKLATNNYSSQNILGEGGYGPVYKVDVYAFGVVALETVAGRSNTNNSIEESKIYLLEWAWDLYEKEQAQRIVDPRLEDFNKDEVLRVIHVALLCTQGSPNQRPPMSRVMAVLTGDAEVVETVTKPSYITEWQYRDGNSTNSESTTSEFSRQKEIDPLTLSPTITGSSHDGR |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g56130 [UniProtKB/Swiss-Prot:C0LGH2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0006270 | OsLima_08g0006270.01 | Chr08 | 5642080 | 5648433 | + | NAM | ||
| CDS seq | atgagcggcgagccatgccgcggcgtccccgtcgacggcgtcaccggcctcgacggcaaccccaagaacaaccccggcatcaagtgcgactgctcctacatcaacggcaccgtctgccatatcacccagctgaaggtatacgccttgaacgttgtcggtcagatacctgcagaattacagaacctcacctacctaaattacctggacctggatcaaaattacttgtcaggccccataccatcattcatagggcaattgactgccttgacagaattgcatgtgggattcaatgcactctcaggaccaattccgaaggaacttgggaatctcacgaacctcaacttgctaggcatcagtttgaccaattttactggtcaacttcctgaagaattgggcaacctgaccaaacttcaacgattgtacactgatagtgctggcttgagtggtccattCccttcaacgttctcaaagcttaagaacctgaagctcctgcgggcatcagataacgattttacaggaaaaatacctgattatattgggagcttgactaaTttggaagatctggctttccaaggaaattcttttgaaggaccgattccggaaagtttgtctaatctaaccaaattgacaaccttacggattggagatattgtaagtgggagctcttcatttgcctttgtcagtagtctgacgtctttgaatatccttgtattgaggaactgcaggatatctggagaccttggagcagtagacttttcaaagttcacaaaattagccttcctggacttgagttttaacaatatctcgggcaaagttcctcaatcaattctgaatctacaaatgcttacagacctgtttcttgggaacaatagcctaacaggaggactgccagatgggataagcccttcactaaaaaacttgtgtagatttttcatacaaccagctcactggaagctttccctcctgggctacccagaacaacttgcaattggtgacctaaaagaaaaggacttcgatataaggaagatggctggtggaaaatctttcactgctgtttacaagagttacacggcaactgtgtcgaaaaacttcctcgaaatccatctgttctgggctggaaagggcacttgttgcattcctattcaaggttactacgggccattgatctcagcattaagcatcactccaaattttactcctactgtgcgaaacggtgtacccaaaaggaaaagtaaagaaggtgcaattgctggaatatcgattggtgcctcagttgtaggattagcagccctatttggaatatttatgttcataaagaagagaagaagacttgcacaacagcaaggagaactgtacaacctagttggacggcctgatgtcttcagtaatgctgaactcaagttagctacaaataattacagttcccAaaacattcttggggaaggtggatatggaccagtctataaggttgatgtttatgcattcGgggtggtcgcattagagactgtcgctggtcgatcgaacactaataactccatcgaggaaagcaagatctatctcttagagtgggcctGggacctgtacgaaaaggagcaagcacaaagaatcgttgatccaagacttgaggatttcaataaagatgaagttctcagagtcattcatgttgcgctcctctgcacacagggctcaccaaatcagcgaccgccaatgtcgagggtcatggcagtgctcactggagatgctgaggtagttgagacggtgacgaaaccgagctacatcactgagtggcaatatagagatggaaacagcaccaactcggaatctaccacctcagagttcagcaggcagaaagagatcgaccctctcaccttgtCGccaacaatcaccggatctagtcatgatggaaggtga
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| Protein seq | MSGEPCRGVPVDGVTGLDGNPKNNPGIKCDCSYINGTVCHITQLKVYALNVVGQIPAELQNLTYLNYLDLDQNYLSGPIPSFIGQLTALTELHVGFNALSGPIPKELGNLTNLNLLGISLTNFTGQLPEELGNLTKLQRLYTDSAGLSGPFPSTFSKLKNLKLLRASDNDFTGKIPDYIGSLTNLEDLAFQGNSFEGPIPESLSNLTKLTTLRIGDIVSGSSSFAFVSSLTSLNILVLRNCRISGDLGAVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLKNLCRFFIQPAHWKLSLLGYPEQLAIGDLKEKDFDIRKMAGGKSFTAVYKSYTATVSKNFLEIHLFWAGKGTCCIPIQGYYGPLISALSITPNFTPTVRNGVPKRKSKEGAIAGISIGASVVGLAALFGIFMFIKKRRRLAQQQGELYNLVGRPDVFSNAELKLATNNYSSQNILGEGGYGPVYKVDVYAFGVVALETVAGRSNTNNSIEESKIYLLEWAWDLYEKEQAQRIVDPRLEDFNKDEVLRVIHVALLCTQGSPNQRPPMSRVMAVLTGDAEVVETVTKPSYITEWQYRDGNSTNSESTTSEFSRQKEIDPLTLSPTITGSSHDGR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0006270 | OsLima_08g0006270.02 | Chr08 | 5646482 | 5648604 | + | IsoSeq | ||
| CDS seq | tttcactgctgtttacaagagttacacggcaactgtgtcgaaaaacttcctcgaaatccatctgttctgggctggaaagggcacttgttgcattcctattcaaggttactacgggccattgatctcagcattaagcatcactccaaattttactcctactgtgcgaaacggtgtacccaaaaggaa |
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| Protein seq | FHCCLQELHGNCVEKLPRNPSVLGWKGHLLHSYSRLLRAIDLSIKHHSKFYSYCAKRCTQKE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.727011 | 0.181373 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0203400 | SBH | 0.0 | 0.0 | 0.338611 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10320 | RBH | 0.790798 | 1.313621 | 1.382893 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0203400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006650 | RBH | 2.053545 | 3.530581 | 8.296441 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006600 | SBH | 0.140585 | 1.337147 | 4.148973 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006720 | RBH | 1.894804 | 2.803652 | 8.249969 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006580 | RBH | 0.539574 | 0.064760 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006610 | RBH | 4.170760 | 1.612104 | 56.630119 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0091400 | SBH | 10.8169235 | 14.028789 | 0.731616 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006330 | RBH | 2.277794 | 0.190318 | 4.557525 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0094100 | SBH | 7.2143315 | 14.259834 | 5.57544 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0026280 | SBH | 0.388759 | 0.306683 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006310 | SBH | 0.039458 | 1.308960 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006360 | RBH | 2.114534 | 3.288301 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006610 | RBH | 0.000000 | 0.132268 | 0.404706 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006380 | RBH | 1.396480 | 1.157436 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006440 | SBH | 1.226671 | 0.304876 | 1.482515 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0006290 | SBH | 2.782911 | 17.499987 | 6.217990 |
