Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsGoSa_07g0009510 OGI:07004740 | 16/16 GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) Chr07:9547018-9549046
Gene Symbol RLCK226, OsRLCK226
DNA seq

atgaagcctgcgttcttcctcttgcgcctcatcagccttcttcacctagcacttgccttgtgttccggcagcggagacttccagttcgcctatcatggcttcaccggcaccaacctcacgctcgacggcaacgccaccgtcatgccagatgggatccttgtgctgaccagccgcaagaccaacctaaaaggccatgcgttcttccccgcgcctctacagttccgcacgtcgcctgatggcacagcccgatccttctcggccgccttcgtgttcgccatcatctccgactacaccgatttcagtgCccacggtatggccttcatcgtgtccccgaccaagaacttcaccaccgcactgccggttgggtacctggccctcctcaacgtccagaacaacggcaacacgaccaaccacctcttcgcggttgagctcgacaccgtccagaacaccgattttcaagacgtcaacgccaaccacgttggcatcaacgtcaacaatcttcactctttgcaatcctccccaactagctactacgatgacggcaacaatggcgtcttcaagaacctaaccctctttagccgagaagcgatgcaggtgtgggtggactatgatggcaacacgggacagattgatgtggctttggcaccaatcaaagtggctaaaccaaggaagccgcttgtttccgctaagtatgacctctcaactgtactcacggaatgggcatacatcggtttctcatctgtgactagcgggatcaattctcggcactacctgctcggctggagctttgccatgaatggccctgctccaccgattaacattgccaatcttcctaagctgccgtgtttcggacccaagcctccatccaaggtcttagtaattgtcctaccaatagctacagcaacagtcatgctcagtcttggtaccattgccaccctactcgtgttaaggcatctgaggtatgctcagttgcttgaagattgggagcttgaatttggcccccatcgattctcatataaggatctatatcatgctactaatggatttaagagcaaacatctcctgggtacgggaggtttcggccaggtgtataaaggagtttttcggaagtctagattggaggtagctgtgaagaaggtttctcacgagtcaaggtagggtatgaaggagttcatctttgaatttgtcaccattggccgcttacggaaccgcaacctcgtgcaattacatggctattgtagaagaaaaggtgaactccttctagtgtatgaatatatgccaaatggtagtattgataaatatctgtattgtcaggaggataagcctttacgggattggagccaaaggttttatatcattaggggtgttgcatctggcttgctctatatccatgagaagtgggagaaagttgtcatccaccgtgacataaaagcaagtaatgtgcttcttgaccatcaaatgaatgggtgcttaggtgattttggactctcaaggttgtatgaccatggcaccgatccccaaaccacacatgtggtgggtacaatgggatacttggCcccagaactaatatggaccggtaaggcatccaaactaacagatgtttttgcatttagtgcgtttcttcttgaaataacttgtgggcaaagaccggtcaacgacgatagtggacgatacaaccaagaaatgttagttgactgggttcttgaccatttcaacaaaggctctcttaatgagacagtggacctgaggttgcaaggtgactgtaatacagatgaggcgtgccgggtgctaaagctaggactgctgtgctcacacccatctgccaacttgagaccgggcatgagacaaatcatgcaataccttgatggtgacactccactcccagacttaacatcaacaaaaatgagctttagcacaatggctctaatgcagaatgaagggttcgactcatatccaatgtcatatccatcgtctgcagcaaccattggcaccgtatccttcctcttaggtggaaggtaactactccctc

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CDS seq

atgaagcctgcgttcttcctcttgcgcctcatcagccttcttcacctagcacttgccttgtgttccggcagcggagacttccagttcgcctatcatggcttcaccggcaccaacctcacgctcgacggcaacgccaccgtcatgccagatgggatccttgtgctgaccagccgcaagaccaacctaaaaggccatgcgttcttccccgcgcctctacagttccgcacgtcgcctgatggcacagcccgatccttctcggccgccttcgtgttcgccatcatctccgactacaccgatttcagtgCccacggtatggccttcatcgtgtccccgaccaagaacttcaccaccgcactgccggttgggtacctggccctcctcaacgtccagaacaacggcaacacgaccaaccacctcttcgcggttgagctcgacaccgtccagaacaccgattttcaagacgtcaacgccaaccacgttggcatcaacgtcaacaatcttcactctttgcaatcctccccaactagctactacgatgacggcaacaatggcgtcttcaagaacctaaccctctttagccgagaagcgatgcaggtgtgggtggactatgatggcaacacgggacagattgatgtggctttggcaccaatcaaagtggctaaaccaaggaagccgcttgtttccgctaagtatgacctctcaactgtactcacggaatgggcatacatcggtttctcatctgtgactagcgggatcaattctcggcactacctgctcggctggagctttgccatgaatggccctgctccaccgattaacattgccaatcttcctaagctgccgtgtttcggacccaagcctccatccaaggtcttagtaattgtcctaccaatagctacagcaacagtcatgctcagtcttggtaccattgccaccctactcgtgttaaggcatctgaggtatgctcagttgcttgaagattgggagcttgaatttggcccccatcgattctcatataaggatctatatcatgctactaatggatttaagagcaaacatctcctgggtacgggaggtttcggccaggaggataagcctttacgggattggagccaaaggttttatatcattaggggtgttgcatctggcttgctctatatccatgagaagtgggagaaagttgtcatccaccgtgacataaaagcaagtaatgtgcttcttgaccatcaaatgaatgggtgcttaggtgattttggactctcaaggttgtatgaccatggcaccgatccccaaaccacacatgtggtgggtacaatgggatacttggCcccagaactaatatggaccggtaaggcatccaaactaacagatgtttttgcatttagtgcgtttcttcttgaaataacttgtgggcaaagaccggtcaacgacgatagtggacgatacaaccaagaaatgttagttgactgggttcttgaccatttcaacaaaggctctcttaatgagacagtggacctgaggttgcaaggtgactgtaatacagatgaggcgtgccgggtgctaaagctaggactgctgtgctcacacccatctgccaacttgagaccgggcatgagacaaatcatgcaataccttgatggtgacactccactcccagacttaacatcaacaaaaatgagctttagcacaatggctctaatgcagaatgaagggttcgactcatatccaatgtcatatccatcgtctgcagcaaccattggcaccgtatccttcctcttaggtggaaggtaa

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Protein seq

MKPAFFLLRLISLLHLALALCSGSGDFQFAYHGFTGTNLTLDGNATVMPDGILVLTSRKTNLKGHAFFPAPLQFRTSPDGTARSFSAAFVFAIISDYTDFSAHGMAFIVSPTKNFTTALPVGYLALLNVQNNGNTTNHLFAVELDTVQNTDFQDVNANHVGINVNNLHSLQSSPTSYYDDGNNGVFKNLTLFSREAMQVWVDYDGNTGQIDVALAPIKVAKPRKPLVSAKYDLSTVLTEWAYIGFSSVTSGINSRHYLLGWSFAMNGPAPPINIANLPKLPCFGPKPPSKVLVIVLPIATATVMLSLGTIATLLVLRHLRYAQLLEDWELEFGPHRFSYKDLYHATNGFKSKHLLGTGGFGQEDKPLRDWSQRFYIIRGVASGLLYIHEKWEKVVIHRDIKASNVLLDHQMNGCLGDFGLSRLYDHGTDPQTTHVVGTMGYLAPELIWTGKASKLTDVFAFSAFLLEITCGQRPVNDDSGRYNQEMLVDWVLDHFNKGSLNETVDLRLQGDCNTDEACRVLKLGLLCSHPSANLRPGMRQIMQYLDGDTPLPDLTSTKMSFSTMALMQNEGFDSYPMSYPSSAATIGTVSFLLGGR

Function L-type lectin-domain containing receptor kinase SIT2 [UniProtKB/Swiss-Prot:Q7XUN6]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsGoSa_07g0009510 OsGoSa_07g0009510.01 Chr07 9547018 9549046 + NAM
CDS seq

atgaagcctgcgttcttcctcttgcgcctcatcagccttcttcacctagcacttgccttgtgttccggcagcggagacttccagttcgcctatcatggcttcaccggcaccaacctcacgctcgacggcaacgccaccgtcatgccagatgggatccttgtgctgaccagccgcaagaccaacctaaaaggccatgcgttcttccccgcgcctctacagttccgcacgtcgcctgatggcacagcccgatccttctcggccgccttcgtgttcgccatcatctccgactacaccgatttcagtgCccacggtatggccttcatcgtgtccccgaccaagaacttcaccaccgcactgccggttgggtacctggccctcctcaacgtccagaacaacggcaacacgaccaaccacctcttcgcggttgagctcgacaccgtccagaacaccgattttcaagacgtcaacgccaaccacgttggcatcaacgtcaacaatcttcactctttgcaatcctccccaactagctactacgatgacggcaacaatggcgtcttcaagaacctaaccctctttagccgagaagcgatgcaggtgtgggtggactatgatggcaacacgggacagattgatgtggctttggcaccaatcaaagtggctaaaccaaggaagccgcttgtttccgctaagtatgacctctcaactgtactcacggaatgggcatacatcggtttctcatctgtgactagcgggatcaattctcggcactacctgctcggctggagctttgccatgaatggccctgctccaccgattaacattgccaatcttcctaagctgccgtgtttcggacccaagcctccatccaaggtcttagtaattgtcctaccaatagctacagcaacagtcatgctcagtcttggtaccattgccaccctactcgtgttaaggcatctgaggtatgctcagttgcttgaagattgggagcttgaatttggcccccatcgattctcatataaggatctatatcatgctactaatggatttaagagcaaacatctcctgggtacgggaggtttcggccaggaggataagcctttacgggattggagccaaaggttttatatcattaggggtgttgcatctggcttgctctatatccatgagaagtgggagaaagttgtcatccaccgtgacataaaagcaagtaatgtgcttcttgaccatcaaatgaatgggtgcttaggtgattttggactctcaaggttgtatgaccatggcaccgatccccaaaccacacatgtggtgggtacaatgggatacttggCcccagaactaatatggaccggtaaggcatccaaactaacagatgtttttgcatttagtgcgtttcttcttgaaataacttgtgggcaaagaccggtcaacgacgatagtggacgatacaaccaagaaatgttagttgactgggttcttgaccatttcaacaaaggctctcttaatgagacagtggacctgaggttgcaaggtgactgtaatacagatgaggcgtgccgggtgctaaagctaggactgctgtgctcacacccatctgccaacttgagaccgggcatgagacaaatcatgcaataccttgatggtgacactccactcccagacttaacatcaacaaaaatgagctttagcacaatggctctaatgcagaatgaagggttcgactcatatccaatgtcatatccatcgtctgcagcaaccattggcaccgtatccttcctcttaggtggaaggtaa

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Protein seq

MKPAFFLLRLISLLHLALALCSGSGDFQFAYHGFTGTNLTLDGNATVMPDGILVLTSRKTNLKGHAFFPAPLQFRTSPDGTARSFSAAFVFAIISDYTDFSAHGMAFIVSPTKNFTTALPVGYLALLNVQNNGNTTNHLFAVELDTVQNTDFQDVNANHVGINVNNLHSLQSSPTSYYDDGNNGVFKNLTLFSREAMQVWVDYDGNTGQIDVALAPIKVAKPRKPLVSAKYDLSTVLTEWAYIGFSSVTSGINSRHYLLGWSFAMNGPAPPINIANLPKLPCFGPKPPSKVLVIVLPIATATVMLSLGTIATLLVLRHLRYAQLLEDWELEFGPHRFSYKDLYHATNGFKSKHLLGTGGFGQEDKPLRDWSQRFYIIRGVASGLLYIHEKWEKVVIHRDIKASNVLLDHQMNGCLGDFGLSRLYDHGTDPQTTHVVGTMGYLAPELIWTGKASKLTDVFAFSAFLLEITCGQRPVNDDSGRYNQEMLVDWVLDHFNKGSLNETVDLRLQGDCNTDEACRVLKLGLLCSHPSANLRPGMRQIMQYLDGDTPLPDLTSTKMSFSTMALMQNEGFDSYPMSYPSSAATIGTVSFLLGGR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0262600 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g15930 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os07g0262600 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0001860 RBH 0.794274 0.468260 0.961358
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0001860 SBH 0.230921 0.095846 1.286250
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0001790 RBH 0.789320 0.0 3.406892
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0001720 SBH 0.004911 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0009560 SBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0164400 RBH 0 0 0.0996465
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0010020 RBH 0.053723 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0163800 RBH 0.002381 0 0.012467
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0001790 SBH 0.096715 0.031098 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0009540 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0001890 SBH 1.448470 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0001940 SBH 0.689459 0.049129 0.446399
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0001890 SBH 0.073340 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G001860 SBH 0.719089 0.114321 0.484302
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0001800 SBH 0.630874 5.298018 0.378688
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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