Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0004370 | OGI:02001240 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:3028559-3030568 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctactccaaaggacacaccaaacgcaatcgcaagctttgtaaaaatctggatacaactatctgatcatataccacacctactccaaaggacacaccaaatgcaatcgcaaagacagtcttgtcgatgtactgctttgtggagataggggaggtcagagcttcttctgtggaattgcaacggcgcgcaacaatagggctacatatctttgggttccctctgaagctagagtctggaaatgtatcaaactggcctccagttgggataggcccttctaggtcattgttagaaacattgaatgctgagaggaagtgcagattgcttagtccaggagggattgcatctgtgagacggttattggacaagtgtagaacctgcaggtttgtgaggttgcagatcgattgtgggatcttcccggataagttgttgaagctgAaatcaagcacaagcacttccaactgaccaattatcggggaaatttcacctgtgaagctgttgtagctcagattcaacaatgtagggaaagcagtaagagcacggtattgaagtgatggaccattatagacaggaatctcaaaaacccttgggtccacatgggttacatatttttctgatctgagcattggcatattcatcagattgattggaatttcttccgtaagtctgttgtcggacatatctataaagaagaggtggtttagggagttgatccaacctggtattggtccagttagtctattgacacttaatattaacatctccagattcttgagcctggatatccattgaggcatattcccagacaataagcagccacctatgtcaagaacttgaagattcccaaaaccatctatgttttcatcctgtggcatgatctctcctctaaagttgcgcccaataagaagggtggtcatggtcctgcaacttttaaggacctgaagtgcatttgtgatgtttgtaaaattattgtgagcaagtgacaagaaggaaagatacttcagattgattattcctgatgataactcaccatggagatggttagcggataaccgtagtgctttcaaatttctgcatgagtaaatgcttactggaattgtgccggtgaagttgttcaagtaaagatctaaagttcttagattatgtagggtggaaaaatcaaccttgccaagatctccatagaagttattgtgctttaggtctatgaccgttagatttgtgcagctgcccagcttCcctggcaactctccagacatcatgttgctacctagatgcaactcctccagtctcttgagctggccgatagaatctggaatctttccagtgagctggttccatcgaagatcaacaatagccagatttttcagtttgattaggtgtgtaccatcaattcttccctgcaatccattgttaggaaaggagaggtactccaatgagatagcattgaagagttcatctggcagggtcccgctgatgttgttgtacccagccttgaacattttaagggcagagcaattacctatcccaggggggacgttgccactgaaccgattgtaggaaaggtcaagcacagtgaaggacggcgagctgatgcagaaagaggaaggtatgtacccagtaaaactattgttgctggcattgatgacgaccaggttcctcattttctcccatgtggtggatggaaagtctcctgtaaaccggttgcttgagatgttcagtacctgcagtggccagtcagatactgatgaattcaactcttgtacttctccgccaaggcggttgaagcaaacatcaaggacaatgatgctgctagaggacatcagctccagtggaataccaccggagagtgagttgtacgacaggtcgaggcgcgacaagctggtgagctctcctagggatggtgagatctgcccttcaagacctcttgaggacagcagtagctcagttactgcgccgtccatgctgcagatgatcccatcccaggtgcaacagtcggtgttgttcctccatgacat
More
|
||||||||||
| CDS seq | atgtcatggaggaacaacaccgactgttgcacctgggatgggatcatctgcagcatggacggcgcagtaactgagctactgctgtcctcaagaggtcttgaagggcagatctcaccatccctaggagagctcaccagcttgtcgcgcctcgacctgtcgtacaactcactctccggtggtattccactggagctgatgtcctctagcagcatcattgtccttgatgtttgcttcaaccgccttggcggagaagtacaagagttgaattcatcagtatctgactggccactgcaggtactgaacatctcaagcaaccggtttacaggagactttccatccaccacatgggagaaaatgaggaacctggtcgtcatcaatgccagcaacaatagttttactgggtacataccttcctctttctgcatcagctcgccgtccttcactgtgcttgacctttcctacaatcggttcagtggcaacgtcccccctgggataggtaattgctctgcccttaaaatgttcaaggctgggtacaacaacatcagcgggaccctgccagatgaactcttcaatgctatctcattggagtacctctcctttcctaacaatggattgcagggaagaattgatggtacacacctaatcaaactgaaaaatctggctattgttgatcttcgatggaaccagctcactggaaagattccagattctatcggccagctcaagagactggaggagttgcatctaggtagcaacatgatgtctggagagttgccaggGaagctgggcagctgcacaaatctaacggtcatagacctaaagcacaataacttctatggagatcttggcaaggttgatttttccaccctacataatctaagaactttagatctttacttgaacaacttcaccggcacaattccagtaagcatttactcatgcagaaatttgaaagcactacggttatccgctaaccatctccatggtgagttatcatcaggaataatcaatctgaagtatctttccttcttgtcacttgctcacaataattttacaaacatcacaaatgcacttcaggtccttaaaagttgcaggaccatgaccacccttcttattgggcgcaactttagaggagagatcatgccacaggatgaaaacatagatggttttgggaatcttcaagttcttgacataggtggctgcttattgtctgggaatatgcctcaatggatatccaggctcaagaatctggagatgttaatattaagtgtcaatagactaactggaccaataccaggttggatcaactccctaaaccacctcttctttatagatatgtccgacaacagacttacggaagaaattccaatcaatctgatgaatatgccaatgctcagatcagaaaaatatgtaacccatgtggacccaagggtttttgagattcctgtctataatggtccatcacttcaataccgtgctcttactgctttccctacattgttgaatctgagctacaacagcttcacaggtgaaatttccccgataattggtcagttggaagtgcttgtgcttgattTcagcttcaacaacttatccgggaagatcccacaatcgatctgcaacctcacaaacctgcaggttctacacttgtccaataaccgtctcacagatgcaatccctcctggactaagcaatctgcacttcctctcagcattcaatgtttctaacaatgacctagaagggcctatcccaactggaggccagtttgatacatttccagactctagcttcagagggaacccaaagatatgtagccctattgttgcgcgccgttgcaattccacagaagaagctctgacctcccctatctccacaaagcagtacatcgacaagactgtctttgcgattgcatttggtgtgtcctttggagtaggtgtggtatatgatcagatagttgtatccagatttttacaaagcttgcgattgcgtttggtgtgtcctttggagtag
More
|
||||||||||
| Protein seq | MSWRNNTDCCTWDGIICSMDGAVTELLLSSRGLEGQISPSLGELTSLSRLDLSYNSLSGGIPLELMSSSSIIVLDVCFNRLGGEVQELNSSVSDWPLQVLNISSNRFTGDFPSTTWEKMRNLVVINASNNSFTGYIPSSFCISSPSFTVLDLSYNRFSGNVPPGIGNCSALKMFKAGYNNISGTLPDELFNAISLEYLSFPNNGLQGRIDGTHLIKLKNLAIVDLRWNQLTGKIPDSIGQLKRLEELHLGSNMMSGELPGKLGSCTNLTVIDLKHNNFYGDLGKVDFSTLHNLRTLDLYLNNFTGTIPVSIYSCRNLKALRLSANHLHGELSSGIINLKYLSFLSLAHNNFTNITNALQVLKSCRTMTTLLIGRNFRGEIMPQDENIDGFGNLQVLDIGGCLLSGNMPQWISRLKNLEMLILSVNRLTGPIPGWINSLNHLFFIDMSDNRLTEEIPINLMNMPMLRSEKYVTHVDPRVFEIPVYNGPSLQYRALTAFPTLLNLSYNSFTGEISPIIGQLEVLVLDFSFNNLSGKIPQSICNLTNLQVLHLSNNRLTDAIPPGLSNLHFLSAFNVSNNDLEGPIPTGGQFDTFPDSSFRGNPKICSPIVARRCNSTEEALTSPISTKQYIDKTVFAIAFGVSFGVGVVYDQIVVSRFLQSLRLRLVCPLE |
||||||||||
| Function | Tyrosine-sulfated glycopeptide receptor 1 [UniProtKB/Swiss-Prot:Q9C7S5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0004370 | OsGoSa_02g0004370.01 | Chr02 | 3028559 | 3030568 | - | NAM | ||
| CDS seq | atgtcatggaggaacaacaccgactgttgcacctgggatgggatcatctgcagcatggacggcgcagtaactgagctactgctgtcctcaagaggtcttgaagggcagatctcaccatccctaggagagctcaccagcttgtcgcgcctcgacctgtcgtacaactcactctccggtggtattccactggagctgatgtcctctagcagcatcattgtccttgatgtttgcttcaaccgccttggcggagaagtacaagagttgaattcatcagtatctgactggccactgcaggtactgaacatctcaagcaaccggtttacaggagactttccatccaccacatgggagaaaatgaggaacctggtcgtcatcaatgccagcaacaatagttttactgggtacataccttcctctttctgcatcagctcgccgtccttcactgtgcttgacctttcctacaatcggttcagtggcaacgtcccccctgggataggtaattgctctgcccttaaaatgttcaaggctgggtacaacaacatcagcgggaccctgccagatgaactcttcaatgctatctcattggagtacctctcctttcctaacaatggattgcagggaagaattgatggtacacacctaatcaaactgaaaaatctggctattgttgatcttcgatggaaccagctcactggaaagattccagattctatcggccagctcaagagactggaggagttgcatctaggtagcaacatgatgtctggagagttgccaggGaagctgggcagctgcacaaatctaacggtcatagacctaaagcacaataacttctatggagatcttggcaaggttgatttttccaccctacataatctaagaactttagatctttacttgaacaacttcaccggcacaattccagtaagcatttactcatgcagaaatttgaaagcactacggttatccgctaaccatctccatggtgagttatcatcaggaataatcaatctgaagtatctttccttcttgtcacttgctcacaataattttacaaacatcacaaatgcacttcaggtccttaaaagttgcaggaccatgaccacccttcttattgggcgcaactttagaggagagatcatgccacaggatgaaaacatagatggttttgggaatcttcaagttcttgacataggtggctgcttattgtctgggaatatgcctcaatggatatccaggctcaagaatctggagatgttaatattaagtgtcaatagactaactggaccaataccaggttggatcaactccctaaaccacctcttctttatagatatgtccgacaacagacttacggaagaaattccaatcaatctgatgaatatgccaatgctcagatcagaaaaatatgtaacccatgtggacccaagggtttttgagattcctgtctataatggtccatcacttcaataccgtgctcttactgctttccctacattgttgaatctgagctacaacagcttcacaggtgaaatttccccgataattggtcagttggaagtgcttgtgcttgattTcagcttcaacaacttatccgggaagatcccacaatcgatctgcaacctcacaaacctgcaggttctacacttgtccaataaccgtctcacagatgcaatccctcctggactaagcaatctgcacttcctctcagcattcaatgtttctaacaatgacctagaagggcctatcccaactggaggccagtttgatacatttccagactctagcttcagagggaacccaaagatatgtagccctattgttgcgcgccgttgcaattccacagaagaagctctgacctcccctatctccacaaagcagtacatcgacaagactgtctttgcgattgcatttggtgtgtcctttggagtaggtgtggtatatgatcagatagttgtatccagatttttacaaagcttgcgattgcgtttggtgtgtcctttggagtag
More
|
|||||||
| Protein seq | MSWRNNTDCCTWDGIICSMDGAVTELLLSSRGLEGQISPSLGELTSLSRLDLSYNSLSGGIPLELMSSSSIIVLDVCFNRLGGEVQELNSSVSDWPLQVLNISSNRFTGDFPSTTWEKMRNLVVINASNNSFTGYIPSSFCISSPSFTVLDLSYNRFSGNVPPGIGNCSALKMFKAGYNNISGTLPDELFNAISLEYLSFPNNGLQGRIDGTHLIKLKNLAIVDLRWNQLTGKIPDSIGQLKRLEELHLGSNMMSGELPGKLGSCTNLTVIDLKHNNFYGDLGKVDFSTLHNLRTLDLYLNNFTGTIPVSIYSCRNLKALRLSANHLHGELSSGIINLKYLSFLSLAHNNFTNITNALQVLKSCRTMTTLLIGRNFRGEIMPQDENIDGFGNLQVLDIGGCLLSGNMPQWISRLKNLEMLILSVNRLTGPIPGWINSLNHLFFIDMSDNRLTEEIPINLMNMPMLRSEKYVTHVDPRVFEIPVYNGPSLQYRALTAFPTLLNLSYNSFTGEISPIIGQLEVLVLDFSFNNLSGKIPQSICNLTNLQVLHLSNNRLTDAIPPGLSNLHFLSAFNVSNNDLEGPIPTGGQFDTFPDSSFRGNPKICSPIVARRCNSTEEALTSPISTKQYIDKTVFAIAFGVSFGVGVVYDQIVVSRFLQSLRLRLVCPLE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0155600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06120 | SBH | 0.070274 | 0.117961 | 0.116745 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0155600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004120 | SBH | 0.124114 | 14.442955 | 1.259517 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004260 | RBH | 0.069201 | 0.845967 | 0.776244 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004290 | SBH | 0.0 | 1.360732 | 0.431390 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004170 | SBH | 0.000000 | 0.012273 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004220 | RBH | 1.506071 | 0.0 | 1.495041 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0050200 | SBH | 0.852885 | 2.079683 | 1.239989 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004220 | SBH | 0.0 | 0.035502 | 0.217687 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0053900 | SBH | 1.113259 | 1.3618645 | 4.3326725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004180 | SBH | 0.043297 | 0.057747 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004090 | SBH | 0.0 | 6.683887 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004260 | SBH | 3.191976 | 29.049385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004210 | SBH | 0.087713 | 0.227309 | 0.100002 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004260 | SBH | 0.050727 | 0.312735 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004310 | SBH | 0.850914 | 0.737580 | 0.524094 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004260 | SBH | 0.000000 | 0.353235 | 0.384476 |
