Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0027290 | OGI:01080540 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:27327680-27331329 | ||||||||
| Gene Symbol | GELP21, OsGELP21, OsGELP21a, OsGELP21b, OsGELP21c | ||||||||||
| DNA seq | atggcttcctccacctccgggagaagaggacgaggacgactcctctcgcctgcggcggttgtgctggcggccgtggctgtgctgctgtcggcgtcacaggcactggcggcgccgtgctacccgcgcgtgttcagcttcggggactcgctagctgacacgggcaacggccctttcctctacggcaacgagtcccgccggccaccgctgtggccaccctacggcgagaccttcttccaccgcgccaccggccgggcctccaacggccgcctcatcatcgacttcatcggtacgctactcgcaaccaatccagcccctccacctgtatttgcttaacccaacatagtattaatcacttgagatttggaaatcgcgcgcgtggcgccggcctcagctgacgcgctggggctgccgttcctgcggccgtactggggcgggcggaccacgggggacttcgccagcggggccaacttcgcggtgggcggcgccacggcgctcagcccggacttcttctgggagagaggcgtgcacgtgcgcgacaccgtgcacctcgacatggagatgaactggttccgcgatctgctcggcctgctctgcccagacgatcttgccggtatgttcgtctatttgttagacttaatcttgttatttactttagggtgaatagctaatatggtccctgaagtttctctttagactcagtttagttcttgaagtttcaaatcgtccaaacaagtcctccaaattaatcatttgggttaatatagttcttggatccacaaaaagtgccacgtgagcatgccaagtcatcctcacatgcatcggtatgaatgaaatgaccattctacccttatataccacctagaaaagaaagaaaaaaaagaagataaatgttttcacacgtgtatgttcgttttagaattgtcacttgcgattgttgctggcctgttattttttttctgtttgtgttttttctttcttttttatatggtatataaaggtagaatggtcatttcattcataccgctacatgcgaggatgacttggcatgcttacgtggcactttttgtgggtctaaggactatattaacccaaatgattaatttggatgacttgtttggtcgatttaaactgagcccgaagcgaaacttcaaataccatattagctattcacctttactttagtgtgagttgtgattagtgtgtgcatgagttagcttgatcaagaaagtccatgacctgcatgaaggtgcttgcatgtcaagtagctgcagtagtggcgtggatagtggatcagttagctctgttgcatgtgtgtgttagtgctctacacgcaaggagatatgacctgcatgcatagagacgtgattagtgggtgattaagtcacggagtgactgaccgagtggtgcggccagacgtggctaacctgtgcgtttgtggtctactagtaattgtgcatgcacgtgcaacgcacgtctccaccaattaatatataatcccaacacacactatttgtaatacaacaatgacaattgtatgtgaatgaaattttcatcacatgaaacaaaaacaaaggaactagacatacatttcaaacccatgtatcatgcaaataagaacacaaaatctctattgaaatagtggcagctcatttattttatattatctaagataaacacagcaatttaaacaaagcttctcctacaagtgacagctcatctattgtttgtcaagacaaaaccaagtgcggaatcccgaatctgcatcaatacactataggctgtgtttgagaaaggggagatagagaagattgggaagatacgcaaaacgaggtgagctattagtgcataattaattgagtattaattattttaaatttcaaaaatgaactaatatgattttttaaagcatctttcctatagaatttttttacaaaaaacgcaccgtttaatagtttggaaaacatgcacgcggaaaacgatgtgcaatctatctccaatctccccgaacgaacactgcctatgtatcctacaaagatcattgaacatatatagtctagcaatcttatagaccatctaaacaaaatacgatagtctggtcatgctccctggtcatcgagcaaataggcaaggtaagcctctacattaaatggagatagaagaatttgaatacgacactcttcaagctagcaagcaaattgcaatgatcatcttaatgactccatcaaaaaagaagttttagtaaactcaattgatgatacagagtcactgtggtatgtcaaataaactaataatgaacttttataagcctacttcagttcacaatgggaaggctatttcataaaacaacctagtagataacaggtcataaataaaggcttacaattttctatgttttataacaactgaactgatggaaaaagagctaaaacattgcagtggtatgaaaattttcaatcaacaggatgtacaacatcagtgccaataaaggtttttgtatgtctccagtcttcacaaactctattcctcacgttgattgcttagatatattcctacgcaagaagtgcaaaaaatagtaataagtaaatatatttttttttctgttccaaaataatcttgtacccaaataagagggtggcactggagagtctgatcatgtaaaactctgttcacaagaaatggtgtttctcaatttaaaaaaagcacgtgcccatttgttcctacatacctggacattggctgaatttccctttaccttttttatagtggaagaagtgttttcttgttgtcatgattgttcacacttcacacacatgtaacaaggcacttgtattccagcatttttttactgctgctacaacaaatacatgtaccaacattccagcatcttgaaatagaaggcaattacctggttatacattgccctgaacaacatgcagtgcacttgcataagatgaaattatagtactgtattttagtccaaattaagaacattctaaaggaaataacacatacggcaacacctcaaacctcctcatagcagcaagctagaaataaatcaggagatggcttgccagtcttcaggtctggatcatcccccatgataacatggtacatcagtgtaaacatctccttgtggttctgtgtctttaaggaaaaatgattcatagatataaagaaataattagacatgattctagtttgaaaagtacatggtttactgtgaaaagatagtacacaggattgagggcaaatatattgtttattgaataaattaccctgttgcaacagccattggtactccatccatttcatcgcaaataaattttaagaagaataaatctgacacattcaggtccatttcgtcaaccaaagtaaggaataagggaagcaaaataaatgattgggggtaggtttgacttaattttaatcagcgcgcattatatcaacatatacataactaaagagtaaaacattcatgttagccaggatagggaactgctgaattggtgctggatcacaatcacaaccagggaattactttatagctttgacccaaatgaggagcagctttctttgtgttttacctgaaactgaatgtatattatttcttcatagataatatgcattgattggaatgtaggacaaaatga
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| CDS seq | atggcttcctccacctccgggagaagaggacgaggacgactcctctcgcctgcggcggttgtgctggcggccgtggctgtgctgctgtcggcgtcacaggcactggcggcgccgtgctacccgcgcgtgttcagcttcggggactcgctagctgacacgggcaacggccctttcctctacggcaacgagtcccgccggccaccgctgtggccaccctacggcgagaccttcttccaccgcgccaccggccgggcctccaacggccgcctcatcatcgacttcatcgatttggaaatcgcgcgcgtggcgccggcctcagctgacgcgctggggctgccgttcctgcggccgtactggggcgggcggaccacgggggacttcgccagcggggccaacttcgcggtgggcggcgccacggcgctcagcccggacttcttctgggagagaggcgtgcacgtgcgcgacaccgtgcacctcgacatggagatgaactggacaaaatga
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| Protein seq | MASSTSGRRGRGRLLSPAAVVLAAVAVLLSASQALAAPCYPRVFSFGDSLADTGNGPFLYGNESRRPPLWPPYGETFFHRATGRASNGRLIIDFIDLEIARVAPASADALGLPFLRPYWGGRTTGDFASGANFAVGGATALSPDFFWERGVHVRDTVHLDMEMNWTK |
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| Function | GDSL esterase/lipase At1g31550 [UniProtKB/Swiss-Prot:Q9C857] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0027290 | OsCMeo_01g0027290.01 | Chr01 | 27327680 | 27331329 | + | NAM | ||
| CDS seq | atggcttcctccacctccgggagaagaggacgaggacgactcctctcgcctgcggcggttgtgctggcggccgtggctgtgctgctgtcggcgtcacaggcactggcggcgccgtgctacccgcgcgtgttcagcttcggggactcgctagctgacacgggcaacggccctttcctctacggcaacgagtcccgccggccaccgctgtggccaccctacggcgagaccttcttccaccgcgccaccggccgggcctccaacggccgcctcatcatcgacttcatcgatttggaaatcgcgcgcgtggcgccggcctcagctgacgcgctggggctgccgttcctgcggccgtactggggcgggcggaccacgggggacttcgccagcggggccaacttcgcggtgggcggcgccacggcgctcagcccggacttcttctgggagagaggcgtgcacgtgcgcgacaccgtgcacctcgacatggagatgaactggacaaaatga
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| Protein seq | MASSTSGRRGRGRLLSPAAVVLAAVAVLLSASQALAAPCYPRVFSFGDSLADTGNGPFLYGNESRRPPLWPPYGETFFHRATGRASNGRLIIDFIDLEIARVAPASADALGLPFLRPYWGGRTTGDFASGANFAVGGATALSPDFFWERGVHVRDTVHLDMEMNWTK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.468444 | 4.889416 | 1.762811 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0650200 | RBH | 2.128304 | 2.484511 | 0.153240 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g46169 | RBH | 1.302544 | 1.834812 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0650200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0027340 | RBH | 0.260041 | 20.908525 | 2.336586 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026830 | SBH | 0.203569 | 1.455687 | 0.704922 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0027280 | SBH | 2.658433 | 63.496506 | 4.767119 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0026520 | SBH | 0.043311 | 0.177659 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0026270 | SBH | 5.801051 | 4.938442 | 6.611800 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0440500 | RBH | 2.210254 | 10.7641695 | 1.437932 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0025950 | SBH | 0.065240 | 0.747979 | 0.342313 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0429100 | RBH | 4.1148525 | 1.4302605 | 2.271668 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0026200 | RBH | 0.029404 | 0.114749 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0026120 | SBH | 0.460061 | 39.808311 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0026450 | SBH | 3.212515 | 6.024920 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0026500 | SBH | 0.617375 | 1.078523 | 1.113019 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0026340 | RBH | 0.542584 | 2.516270 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026710 | SBH | 0.336520 | 0.476939 | 0.929988 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0026480 | SBH | 0.654104 | 7.074429 | 0.962583 |
