Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0003240 | OGI:01056340 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:5012707-5013627 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATCTGAGAGCTACCTTCGCTTCAACCAATTCTTTCGTACCCTCAGCTCTACTCATGTTAGCTTCGGCTATTTCAAGTGCTTGTTGAGCTTCTTCCGGATCAATGTCACTACCCAGTTCCGCATCATTTCCTAAAATGATGATCTCATTATTAACTATTCTGGCAAAACCGCTCCACAGAACCGCTGTTAACCATTGATCGTTGAGGAGGCGTATTCTCAAGGGACCCATATCTACAGCTGTGTTAATGGGGGCGTGGTTTGGTAATACGCCAATTTGGCCACTATTAGTAGATAAAATGATTTCTTTCACTTCACAATCCCAAATAATTCGCTTAGGAGTCAGTACATAAAGATTTAATTACATTTCTTCAATTTGTTCTCCTCTTCTAAGTTTATAGCTTTCATGCTAGCTTCATCGATGTTACCCACCAAATAAAAAGCCTGTTCGAGTAGGCCGTCTAATTCTCCGGAAAGGATTAGTTGAAATCCCCTAATAGTTTCTGCAAGACCAACATACTTTCCCGGAGAACTGATAAAAACTTCTGCCAGGTTGTGATAAGAAGCGCTCAATTTTTCGTGCTCTTGCTACAGTTAAACGATCCTGCTCCGATAATTCATCCAACCCAAGAATTGCGATAGTGTCCTGAAGTTCTTTGTAACGTTGTAAAGTTTGCTTAACTCTTTGCGCAGTTTCATAATGTTCGTTGCCAACGATCCGAGGTTGTAACCTAGTTGAGGTTGAATCTAAAGGATCTACTGCAGGATAAATCCCTTTGGAAGCTAATCCTCTGGTAAGTACGGTAGTAGCATCCAAATGTGCAAATGTTGTAGCAGGAGCAGGGTCGGTCAAATCGTCCGCAGGTACATAAACCGCTTGGATCGAAGTTATAGATCCCTTTTTAGTAGAAGTAATTCTTTC
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| CDS seq | ATGGGTCCCTTGAGAATACGCCTCCTCAACGATCAATGGTTAACAGCGGTTCTGTGGAGCGGTTTTGCCAGAATAGTTAATAATGAGATCATCATTTTAGGAAATGATGCGGAACTGGGTAGTGACATTGATCCGGAAGAAGCTCAACAAGCACTTGAAATAGCCGAAGCTAACATGAGTAGAGCTGAGGGTACGAAAGAATTGGTTGAAGCGAAGGTAGCTCTCAGATGA |
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| Protein seq | MGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANMSRAEGTKELVEAKVALR |
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| Function | ATP synthase epsilon chain, chloroplastic [UniProtKB/Swiss-Prot:P0C2Z3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0003240 | OsARC_04g0003240.01 | Chr04 | 5012707 | 5013627 | - | NAM | ||
| CDS seq | ATGGGTCCCTTGAGAATACGCCTCCTCAACGATCAATGGTTAACAGCGGTTCTGTGGAGCGGTTTTGCCAGAATAGTTAATAATGAGATCATCATTTTAGGAAATGATGCGGAACTGGGTAGTGACATTGATCCGGAAGAAGCTCAACAAGCACTTGAAATAGCCGAAGCTAACATGAGTAGAGCTGAGGGTACGAAAGAATTGGTTGAAGCGAAGGTAGCTCTCAGATGA
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| Protein seq | MGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANMSRAEGTKELVEAKVALR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.134497 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g02980 | SBH | 34.785397 | 34.976414 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006800 | SBH | 2.775689 | 0.000000 | 1.196737 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035950 | SBH | 147.126724 | 13.097737 | 157.906006 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004300 | SBH | 43.506924 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036150 | RBH | 102.647377 | 21.123169 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003160 | RBH | 481.906342 | 27.525896 | 206.294907 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0302900 | RBH | 63.5090635 | 49.432402 | 37.333579 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003250 | SBH | 16.091660 | 0.510934 | 7.719723 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0082400 | RBH | 0.785881 | 0.108515 | 0.472864 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0001430 | RBH | 140.013885 | 48.600990 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002990 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011470 | RBH | 36.270065 | 22.764162 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003370 | RBH | 2.454788 | 2.142269 | 3.607090 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009700 | SBH | 171.282562 | 61.221684 | 397.537872 |
