Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0009700 | OGI:12030280 | 8/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:10460587-10461000 | ||||||||
| Gene Symbol | AtpB | ||||||||||
| DNA seq | tcaattagatgggggaatccaattaacagcctcgactcgtatcctagctcgtctgagagctaccttcgcttcaaccaattctttcgtaccctcagctctactcacgttagcttcggctatttcaagtgcctgttgagcttcttccggatcaatgtcactacccagttccgcatcatttcctaaaatgatgatctcattattaactattctggcaaaaccgctccacagaaccgccgttaaccattGatcgttgaggaggcgtattctcaagggacccatatctacagctgtgttaatgggggcgtggtttggtaatacgccaatttggccactattagtagataaaatgatttctttcacttcacaatCccaaataattcgcttaggagtcagtacataaagatttaatttcat
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| CDS seq | atgaaattaaatctttatgtactgactcctaagcgaattatttggGattgtgaagtgaaagaaatcattttatctactaatagtggccaaattggcgtattaccaaaccacgcccccattaacacagctgtagatatgggtcccttgagaatacgcctcctcaacgatCaatggttaacggcggttctgtggagcggttttgccagaatagttaataatgagatcatcattttaggaaatgatgcggaactgggtagtgacattgatccggaagaagctcaacaggcacttgaaatagccgaagctaacgtgagtagagctgagggtacgaaagaattggttgaagcgaaggtagctctcagacgagctaggatacgagtcgaggctgttaattggattcccccatctaattga
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| Protein seq | MKLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEGTKELVEAKVALRRARIRVEAVNWIPPSN |
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| Function | ATP synthase epsilon chain, chloroplastic [UniProtKB/Swiss-Prot:P0C2Z3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0009700 | OsNaBo_12g0009700.01 | Chr12 | 10460587 | 10461000 | - | NAM | ||
| CDS seq | atgaaattaaatctttatgtactgactcctaagcgaattatttggGattgtgaagtgaaagaaatcattttatctactaatagtggccaaattggcgtattaccaaaccacgcccccattaacacagctgtagatatgggtcccttgagaatacgcctcctcaacgatCaatggttaacggcggttctgtggagcggttttgccagaatagttaataatgagatcatcattttaggaaatgatgcggaactgggtagtgacattgatccggaagaagctcaacaggcacttgaaatagccgaagctaacgtgagtagagctgagggtacgaaagaattggttgaagcgaaggtagctctcagacgagctaggatacgagtcgaggctgttaattggattcccccatctaattga
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| Protein seq | MKLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEGTKELVEAKVALRRARIRVEAVNWIPPSN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 171.282562 | 61.221684 | 397.537872 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g19430 | RBH | 46.574120 | 42.115631 | 7.274285 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0010020 | RBH | 29.366352 | 11.754887 | 45.116379 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0010240 | RBH | 69.832016 | 8.452233 | 87.874069 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0010170 | RBH | 55.521107 | 8.244785 | 59.458744 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009900 | SBH | 26.292580 | 0.795064 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0155600 | RBH | 4693.512451 | 358.1262665 | 325.453857 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009840 | SBH | 465.771545 | 38.300346 | 193.190689 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0019500 | SBH | 85.8620225 | 5.305676 | 7.5884395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009760 | SBH | 134.408096 | 6.130223 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0010020 | SBH | 285.373352 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009970 | SBH | 1459.176636 | 558.825500 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009920 | SBH | 4.013259 | 0.0 | 0.806385 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0010020 | RBH | 334.366943 | 46.043713 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009770 | RBH | 40.619621 | 11.340628 | 58.876556 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
