Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_04g0011470 | OGI:01056340 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr04:19751178-19752863 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaattagatgggggaatccaattaacagcctcgactcgtatcccagctcgtctgagagctagcttcgcttcaaccaattctttcgtaccctcagctctactcacgttagcttcggctatttcaagtgcctgttgagcttcttccggatcaatgtcactacccagttccgcatcatttcctaaaatgatgatctcattattaactattctggcaaaaccgctccacagaaccgccgttaaccattgatcgttgaggaggcgtattctcaagggacccatatctacagctgtgttaatgggggcgtggtttggtaatacgccaatttggccactattagtagaTaaaatgatttctttcacttcacaatcccaaataattcgcttaggagtcagtacataaagatttaatttcatttcttcaatttgttCtcctcttctaagtttatagctttcgtgctagcttcatcgatgttacccaccaaataaaaagcctgttcgggtaggccgtctaattctccggaaaggattagttgaaatccccgaattgtttctgcaagaccaacatactttcctggagaaccggtaaaaacttctgccacaaagaacggttgtgataggaagcgctcaatttttcgtgctcttgctacagttaaacgatcctcctccgataattcatccaacccaagaattgcgataatgtcctgaagttctttgtaacgttgtaaagtttgcttaactctttgcgcagtttcataatgttcgttgccaacgatccgaggttgtaacatagttgaggttgaatctaaaggatctaggataaatacccttggaagctaatcctctggaaagtacggtagtagcatccaaatgtgcaaatgttgtAgcaggagcagggtcggtcaaatcgtccgcaggtacataaaccgcttggatcgaagttatagatccctttttagtagaagtaattctttcttgcaaagaacccatttctgtactaagagtaggttgataacccactgcagagggcattctccctaataaggcaaatacccccgatcctgcttgaacaaaacgaaagatattatcgatgaatagaagcacgtcttgcttattaacatctcggaaatattctgccatagttagggcagtcaaaccaactctcatacgagctcctggcggttcattcatttggccatagactagagctacctttgattcctcaaggatttttttcattaattactcctttatttccatataaagatcatttccttcacgagtccgttCccctactccgccaaatacggatacgcctctatgagctttagcaatattgttgattaattccatgatgagtactgttttacctactccagttCccccaaatagtccgaTttttcctccacgccgataaggagctaaaagatcgaccaccttaataccagtttcaaagatggataatttcgtatctaactcgattatttcctaataattgttgtacctcacaagtcacattaatttgcttaccgtcagtgtctcgactaccaaagcgttataaatataaggtaacttgcccgggggaaaagtggcatccagcacgggtccaataatttgatcgatacgccctgtacttttttcttcaattgtagaaaccccgggatgagaagtagtaggattggttctcat
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| CDS seq | atgagaaccaatcctactacttctcatcccggggtttctacaattgaagaaaaaagtacagggcgtatcgatcaaattattggacccgtgctggatgccacttttcccccgggcaagttaccttatatttataacgctttggtagtcgagacactgacggaaataatcgagttagatacgaaattatccatctttgaaactggtattaaggtggtcgatcttttagctccttatcggcgtggaggaaaaAtcggactatttggggGaactggagtaggatcgggggtatttgccttattagggagaatgccctctgcagtgggttatcaacctactcttagtacagaaatgggttctttgcaagaaagaattacttctactaaaaagggatctataacttcgatccaagcggtttatgtacctgcggacgatttgaccgaccctgctcctgcTacaacatttgcacatttggatgctactaccgtactttccagaggattagcttccaaggtgaaagaaatcattttAtctactaatagtggccaaattggcgtattaccaaaccacgcccccattaacacagctgtagatatgggtcccttgagaatacgcctcctcaacgatcaatggttaacggcggttctgtggagcggttttgccagaatagttaataatgagatcatcattttaggaaatgatgcggaactgggtagtgacattgatccggaagaagctcaacaggcacttgaaatagccgaagctaacgtgagtagagctgagggtacgaaagaattggttgaagcgaagctagctctcagacgagctgggatacgagtcgaggctgttaattggattcccccatctaattga
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| Protein seq | MRTNPTTSHPGVSTIEEKSTGRIDQIIGPVLDATFPPGKLPYIYNALVVETLTEIIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGTGVGSGVFALLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEGTKELVEAKLALRRAGIRVEAVNWIPPSN |
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| Function | ATP synthase epsilon chain, chloroplastic [UniProtKB/Swiss-Prot:P0C2Z3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_04g0011470 | OsLaMu_04g0011470.01 | Chr04 | 19751178 | 19752863 | - | NAM | ||
| CDS seq | atgagaaccaatcctactacttctcatcccggggtttctacaattgaagaaaaaagtacagggcgtatcgatcaaattattggacccgtgctggatgccacttttcccccgggcaagttaccttatatttataacgctttggtagtcgagacactgacggaaataatcgagttagatacgaaattatccatctttgaaactggtattaaggtggtcgatcttttagctccttatcggcgtggaggaaaaAtcggactatttggggGaactggagtaggatcgggggtatttgccttattagggagaatgccctctgcagtgggttatcaacctactcttagtacagaaatgggttctttgcaagaaagaattacttctactaaaaagggatctataacttcgatccaagcggtttatgtacctgcggacgatttgaccgaccctgctcctgcTacaacatttgcacatttggatgctactaccgtactttccagaggattagcttccaaggtgaaagaaatcattttAtctactaatagtggccaaattggcgtattaccaaaccacgcccccattaacacagctgtagatatgggtcccttgagaatacgcctcctcaacgatcaatggttaacggcggttctgtggagcggttttgccagaatagttaataatgagatcatcattttaggaaatgatgcggaactgggtagtgacattgatccggaagaagctcaacaggcacttgaaatagccgaagctaacgtgagtagagctgagggtacgaaagaattggttgaagcgaagctagctctcagacgagctgggatacgagtcgaggctgttaattggattcccccatctaattga
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| Protein seq | MRTNPTTSHPGVSTIEEKSTGRIDQIIGPVLDATFPPGKLPYIYNALVVETLTEIIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGTGVGSGVFALLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEGTKELVEAKLALRRAGIRVEAVNWIPPSN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_04g0011470 | OsLaMu_04g0011470.02 | Chr04 | 19751614 | 19752280 | - | IsoSeq | ||
| CDS seq | acgtgcttctattcatcgataatatctttcgttttgttcaagcaggatcgggggtatttgcct |
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| Protein seq | TCFYSSIISFVLFKQDRGYLP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 36.270065 | 22.764162 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g58000 | SBH | 208.948624 | 206.972733 | 31.775543 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036440 | SBH | 195.072189 | 54.160545 | 311.076752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0010240 | SBH | 69.832016 | 8.452233 | 87.874069 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0010170 | SBH | 55.521107 | 8.244785 | 59.458744 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003240 | RBH | 0.134497 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003160 | SBH | 481.906342 | 27.525896 | 206.294907 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0302900 | RBH | 63.5090635 | 49.432402 | 37.333579 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002990 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0010020 | RBH | 334.366943 | 46.043713 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003370 | RBH | 2.454788 | 2.142269 | 3.607090 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009700 | SBH | 171.282562 | 61.221684 | 397.537872 |
