Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g58000 | OGI:01056340 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:33539907-33540440 | ||||||||
| Gene Symbol | AtpB | ||||||||||
| DNA seq | TTTTTCTTTGTATCAACTAAACCGTTGGGTTGTCTTCAATTAGATGGGGGAATCCAATTAACAGCCTCGACTCGTATCCTAGCTCGTCTGAGAGCTACCTTCGCTTCAACCAATTCTTTCGTACCCTCAGCTCTACTCACGTTAGCTTCGGCTATTTCAAGTGCCTGTTGAGCTTCTTCCGGATCAATGTCACTACCCAGTTCCGCATCATTTCCTAAAATGATGATCTCATTATTAACTATTCTGGCAAAACCGCTCCACAGAACCGCCGTTAACCATTGATCGTTGAGGAGGCGTATTCTCAAGGGACCCATATCTACAGCTGTGTTAATGGGGGCGTGGTTTGGTAATACGCCAATTTGGCCACTATTAGTAGATAAAATGATTTCTTTCACTTCACAATCCCAAATAATTCGCTTAGGAGTCAGTACATAAAGATTTAATTTCATTTCTTCAATTTGTTCTCCTCTTCTAAGTTTATAGCTTTCGTGCTAGCTTCATCGATGTTACCCACCAAATAAAAAGCCTGTTCGG
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| CDS seq | ATGAAATTAAATCTTTATGTACTGACTCCTAAGCGAATTATTTGGGATTGTGAAGTGAAAGAAATCATTTTATCTACTAATAGTGGCCAAATTGGCGTATTACCAAACCACGCCCCCATTAACACAGCTGTAGATATGGGTCCCTTGAGAATACGCCTCCTCAACGATCAATGGTTAACGGCGGTTCTGTGGAGCGGTTTTGCCAGAATAGTTAATAATGAGATCATCATTTTAGGAAATGATGCGGAACTGGGTAGTGACATTGATCCGGAAGAAGCTCAACAGGCACTTGAAATAGCCGAAGCTAACGTGAGTAGAGCTGAGGGTACGAAAGAATTGGTTGAAGCGAAGGTAGCTCTCAGACGAGCTAGGATACGAGTCGAGGCTGTTAATTGGATTCCCCCATCTAATTGA
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| Protein seq | MKLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEGTKELVEAKVALRRARIRVEAVNWIPPSN |
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| Function | ATP synthase epsilon chain, chloroplastic [UniProtKB/Swiss-Prot:P0C2Z3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g58000 | LOC_Os01g58000.1 | Chr01 | 33539907 | 33540440 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAATTAAATCTTTATGTACTGACTCCTAAGCGAATTATTTGGGATTGTGAAGTGAAAGAAATCATTTTATCTACTAATAGTGGCCAAATTGGCGTATTACCAAACCACGCCCCCATTAACACAGCTGTAGATATGGGTCCCTTGAGAATACGCCTCCTCAACGATCAATGGTTAACGGCGGTTCTGTGGAGCGGTTTTGCCAGAATAGTTAATAATGAGATCATCATTTTAGGAAATGATGCGGAACTGGGTAGTGACATTGATCCGGAAGAAGCTCAACAGGCACTTGAAATAGCCGAAGCTAACGTGAGTAGAGCTGAGGGTACGAAAGAATTGGTTGAAGCGAAGGTAGCTCTCAGACGAGCTAGGATACGAGTCGAGGCTGTTAATTGGATTCCCCCATCTAATTGA
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| Protein seq | MKLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEGTKELVEAKVALRRARIRVEAVNWIPPSN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 208.948624 | 206.972733 | 31.775543 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21264 | RBH | 76.747795 | 57.055740 | 12.203124 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036440 | RBH | 195.072189 | 54.160545 | 311.076752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035950 | RBH | 147.126724 | 13.097737 | 157.906006 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036330 | RBH | 194.305023 | 25.919641 | 201.237839 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035720 | RBH | 21.455843 | 0.987112 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0155600 | SBH | 4693.512451 | 358.1262665 | 325.453857 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0001460 | SBH | 184.577347 | 9.882667 | 86.070229 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0550900 | RBH | 1710.618164 | 357.5766445 | 254.8066865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0001430 | SBH | 140.013885 | 48.600990 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019800 | SBH | 238.438507 | 0.0 | 98.746689 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0010020 | SBH | 334.366943 | 46.043713 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003370 | SBH | 2.454788 | 2.142269 | 3.607090 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009700 | SBH | 171.282562 | 61.221684 | 397.537872 |
