Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_01G0550900 | OGI:01056340 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr01:35074293-35075129 | ||||||||
| Gene Symbol | AtpB | ||||||||||
| DNA seq | TTAGACTGACGGAACAAAGCTAAGAAGTAGGCTGAATGGAAAAAGGAAAGGGACAAGGGCGGTCGTCGCTTGGCGCGAAGGCTGCTGGTTCGGTACGGTACTAAAGGTCCTCGGACTTCCAGGCGGTTTTTCTTTTGGGCTGCTGGGAACCCTTGGATCTCGCCAATACAGCCTCCTATGGTTTTCGTTACCGAGATATCTTTTCTTTTTCCCAGGGATTTTTTGGGTAATCAGCTCCCATGCTGCAAACAGTCAAATCTGAACCTTGCTGTTTACTATAATAACATACCAATAACGAAGCGGTATTTGCTTATAAAAAGGATTCGATCTATAATCGATCGAAGTAAAGGGTCTTCCTTTGTGGTGATAAATTGCCTACTTAACTCAGTGGTTAGAGTATTGCTTTCATACGGCGGGAGTCATTGGTTCAAATCCAATAGTAGGTAGGTAGGTAGAAAAATTACTAGATAGCATTGGCCCTACTTCGCTTCGCTATCTAATAAATTTTTCTACCCCTCTTCCCTTTTTCTTTGTATCAACTAAACCGTTGGGTTGTCTTCAATTAGATGGGGGAATCCAATTAACAGCCTCGACTCGTATCCTAGCTCGTCTGAGAGCTACCTTCGCTTCAACCAATTCTTTCGTACCCTCAGCTCTACTCACGTTAGCTTCGGCTATTTCAAGTGCCTGTTGAGCTTCTTCCGGATCAATGTCACTACCCAGTTCCGCATCATTTCCTAAAATGATGATCTCATTATTAACTATTCTGGCAAAACCGCTCCACAGAACCGCCGTTAACCATTGATCGTTGAGGAGGCGTATTCTCAAGGGACCCAT
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| CDS seq | ATGGGTCCCTTGAGAATACGCCTCCTCAACGATCAATGGTTAACGGCGGTTCTGTGGAGCGGTTTTGCCAGAATAGTTAATAATGAGATCATCATTTTAGGAAATGATGCGGAACTGGGTAGTGACATTGATCCGGAAGAAGCTCAACAGGCACTTGAAATAGCCGAAGCTAACGTGAGTAGAGCTGAGGCATGGGAGCTGATTACCCAAAAAATCCCTGGGAAAAAGAAAAGATATCTCGGTAACGAAAACCATAGGAGGCTGTATTGGCGAGATCCAAGGGTTCCCAGCAGCCCAAAAGAAAAACCGCCTGGAAGTCCGAGGACCTTTAGTACCGTACCGAACCAGCAGCCTTCGCGCCAAGCGACGACCGCCCTTGTCCCTTTCCTTTTTCCATTCAGCCTACTTCTTAGCTTTGTTCCGTCAGTCTAA
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| Protein seq | MGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEAWELITQKIPGKKKRYLGNENHRRLYWRDPRVPSSPKEKPPGSPRTFSTVPNQQPSRQATTALVPFLFPFSLLLSFVPSV |
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| Function | ATP synthase epsilon chain, chloroplastic [UniProtKB/Swiss-Prot:P0C2Z3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_01G0550900 | OsZS97_01T0550900-mRNA-1 | Chr01 | 35074293 | 35075129 | - | makerRMon | ||
| CDS seq | ATGGGTCCCTTGAGAATACGCCTCCTCAACGATCAATGGTTAACGGCGGTTCTGTGGAGCGGTTTTGCCAGAATAGTTAATAATGAGATCATCATTTTAGGAAATGATGCGGAACTGGGTAGTGACATTGATCCGGAAGAAGCTCAACAGGCACTTGAAATAGCCGAAGCTAACGTGAGTAGAGCTGAGGCATGGGAGCTGATTACCCAAAAAATCCCTGGGAAAAAGAAAAGATATCTCGGTAACGAAAACCATAGGAGGCTGTATTGGCGAGATCCAAGGGTTCCCAGCAGCCCAAAAGAAAAACCGCCTGGAAGTCCGAGGACCTTTAGTACCGTACCGAACCAGCAGCCTTCGCGCCAAGCGACGACCGCCCTTGTCCCTTTCCTTTTTCCATTCAGCCTACTTCTTAGCTTTGTTCCGTCAGTCTAA
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| Protein seq | MGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEAWELITQKIPGKKKRYLGNENHRRLYWRDPRVPSSPKEKPPGSPRTFSTVPNQQPSRQATTALVPFLFPFSLLLSFVPSV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1710.618164 | 357.5766445 | 254.8066865 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g58000 | RBH | 208.948624 | 206.972733 | 31.775543 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036440 | RBH | 195.072189 | 54.160545 | 311.076752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035950 | RBH | 147.126724 | 13.097737 | 157.906006 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036330 | RBH | 194.305023 | 25.919641 | 201.237839 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035720 | RBH | 21.455843 | 0.987112 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019800 | RBH | 238.438507 | 0.0 | 98.746689 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003370 | SBH | 2.454788 | 2.142269 | 3.607090 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
