Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0036150 | OGI:01056340 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:33863868-33866803 | ||||||||
| Gene Symbol | AtpB | ||||||||||
| DNA seq | TTAGATTATGCTTCCTTGCCCGTGTGGAACATGTGTGAGCATTATTTTTTTCCAACAAGTGATCCGACTGGAAGAAGTGTTATATGAGGACTTCGAGATCAAATAGAGAATCTGTCTCTCCATTCCTCGTGAGCCACTTATTTCTCCGAAATCTGAGATCAGAGTGATTTTCCTCCTTTTTCCCAAATAGTCGACGGTCTTACACCATTGGGATACTTCGGATAAACTGGAGTACATATATGAGAGACCGGTGCTAAAACCTTTTCTCGAGATATCTTCCAAATTCTTAGGGTCCTTGAAACGGATCTTGTTCCCCCGGTGCGAAAGCAGTTGGTTCCGTAGTTTGAGAATTAGCAAAGGACATATTAGGGCTATACGGATTCGAACCGTAGACCTTCTCGGTAAAACAGATCAAACGGATTATTATCGAAATGATTCGAACTGTTTCAAAGACCCAACATGCATTTTTTTGCATTGGGCTCTTTTATCAACTGATAGAAAGATCAGTTAGTCCACCATAGTTTTTCTTTACGGAAAGATAATGAGATGGCTCCCTGCGCTCTGATTGATTATTTGTATTATGATCTATCTAAGAGCAATACCAAAGTGTTTCAAAGGAGGATTACCTTGACTTAGGTCTGCCTCCGGCCTAAATTAAATCAACCTAAGTGAAATAGAGTCTCTATCGTTCCGCTACAAGAGTTGACTATGAGACTTCATACACCTTAAAGTTCATAGAACGAAAAGAATTTTTTTGGAGGCCCTTATCCTCATTAAGCCTAGCATTTAGTGGGCTGGATATTTACCTTATCAACTAGCAAATCAATAAAGGTTCTATTTGTTTAGGCACCTGGATTGGTACCTGAATCGGACTGAACCAACTATTTGTCAGGCGACTGTTCTCCTATTCTCTCGAATCCATGAAGTAAGACATTGATTTTGCAAGAAGATCCACTATGTTCATTGCATAATAAGCTCCCTTGAAAAGCATTGGCGCACGTGTAAACGAGTTGCTCTACCGAACTGAGCTATAGCCCTTGTCAGAGATATCTTAATATATAGAGAATTTCTTGTCAAGATGAATATTCTCTAATAGTAGAGGATATCCTTTGATCTGTTTACTATAATAACATACCAATAACGAAGCGGTATTTGCTTATAAAAAGGATTCGATCTATAATCGATCGAAGTAAAGGGTCTTCCTTTGTGGTGATAAATTGCCTACTTAACTCAGTGGTTAGAGTATTGCTTTCATACGGCGGGAGTCATTGGTTCAAATCCAATAGTAGGTAGGTAGGTAGAAAAATTACTAGATAGCATTGGCCCTACTTCGCTTCGCTATCTAATAATTTTTTCTACCCCTCTTCCCTTTTTCTTTGTATCAACTAAACCGTTGGGTTGTCTTCAATTAGATGGGGGAATCCAATTAACAGCCTCGACTCGTATCCTAGCTCGTCTGAGAGCTACCTTCGCTTCAACCAATTCTTTCGTACCCTCAGCTCTACTCACGTTAGCTTCGGCTATTTCAAGTGCCTGTTGAGCTTCTTCCGGATCAATGTCACTACCCAGTTCCGCATCATTTCCTAAAATGATGATCTCATTATTAACTATTCTGGCAAAACCGCTCCACAGAACCGCCGTTAACCATTGATCGTTGAGGAGGCGTATTCTCAAGGGACCCATATCTACAGCTGTGTTAATGGGGGCGTGGTTTGGTAATACGCCAATTTGGCCACTATTAGTAGATAAAATGATTTCTTTCACTTCACAATCCCAAATAATTCGCTTAGGAGTCAGTACATAAAGATTTAATTTCATTTCTTCAATTTGTTCTCCTCTTCTAAGTTTATAGCTTTCGTGCTAGCTTCATCGATGTTACCCACCAAATAAAAAGCCTGTTCGGGTAGGCCGTCTAATTCTCCGGAAAGGATTAGTTGAAATCCCCTAATAGTTTCTGCAAGACCAACATACTTTCCCGGAGAACCGGTAAAAACTTCTGCCACAAAAAACGGTTGTGATAAGAAGCGCTCAATTTTTCGTGCTCTTGCTACAGTTAAACGATCCTCCTCCGATAATTCATCCAACCCAAGAATTGCGATAATGTCCTGAAGTTCTTTGTAACGTTGTAAAGTTTGCTTAACTCTTTGCGCAGTTTCATAATGTTCGTTGCCAACGATCCGAGGTTGTAACATAGTTGAGGTTGAATCTAAAGGATCTACTGCAGGATAAATCCCTTTGGAAGCTAATCCTCTGGAAAGTACGGTAGTAGCATCCAAATGTGCAAATGTTGTAGCAGGAGCAGGGTCGGTCAAATCGTCCGCAGGTACATAAACCGCTTGGATCGAAGTTATAGATCCCTTTTTAGTAGAAGTAATTCTTTCTTGCAAAGAACCCATTTCTGTACTAAGAGTAGGTTGATAACCCACTGCAGAGGGCATTCTCCCTAATAAGGCAGATACCTCCGATCCTGCTTGAACAAAACGAAAGATATTATCGATGAATAGAAGCACGTCTTGCTTATTAACATCTCGGAAATATTCTGCCATAGTTAGGGCAGTCAAACCAACTCTCATACGAGCTCCTGGCGGTTCATTCATTTGGCCATAGACTAGAGCTACCTTTGATTCCTCAAGATTTTTTTCATTAATTACTCCAGATTCCTTCATTTCCATATAAAGATCATTTCCTTCACGAGTCCGTTCCCCTACTCCGCCAAATACGGATACGCCCCCGTGAGCTTTAGCAATATTGTTGATTAATTCCATGATGAGTACTGTTTTACCTACTCCAGCTCCCCCAAATAGTCCGATTTTTCCTCCACGCCGATAAGGAGCTAAAAGATCGACCACCTTAATACCAGTTTCAAAGATGGATAATTTCGTATCTAACTCGATAAAGGCGGGCGCGGATCTATGAATAGGGAATGTTGCACTAGT
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| CDS seq | ATGGAATTAATCAACAATATTGCTAAAGCTCACGGGGGCGTATCCGTATTTGGCGGAGTAGGGGAACGGACTCGTGAAGGAAATGATCTTTATATGGAAATGAAGGAATCTGGAGTAATTAATGAAAAAAATCTTGAGGAATCAAAGGTAGCTCTAGTCTATGGCCAAATGAATGAACCGCCAGGAGCTCGTATGAGAGTTGGTTTGACTGCCCTAACTATGGCAGAATATTTCCGAGATGTTAATAAGCAAGACGTGCTTCTATTCATCGATAATATCTTTCGTTTTGTTCAAGCAGGATCGGAGGTATCTGCCTTATTAGGGAGAATGCCCTCTGCAGTGGGTTATCAACCTACTCTTAGTACAGAAATGGGTTCTTTGCAAGAAAGAATTACTTCTACTAAAAAGGGATCTATAACTTCGATCCAAGCGGTTTATGTACCTGCGGACGATTTGACCGACCCTGCTCCTGCTACAACATTTGCACATTTGGATGCTACTACCGTACTTTCCAGAGGATTAGCTTCCAAAGGGATTTATCCTGCAGTAGATCCTTTAGATTCAACCTCAACTATGTTACAACCTCGGATCGTTGGCAACGAACATTATGAAACTGCGCAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACTTCAGGACATTATCGCAATTCTTGGGTTGGATGAATTATCGGAGGAGGATCGTTTAACTGTAGCAAGAGCACGAAAAATTGAGCGCTTCTTATCACAACCGTTTTTTGTGGCAGAAGTTTTTACCGGTTCTCCGGGAAATGGCCAAATTGGCGTATTACCAAACCACGCCCCCATTAACACAGCTGTAGATATGGGTCCCTTGAGAATACGCCTCCTCAACGATCAATGGTTAACGGCGGTTCTGTGGAGCGGTTTTGCCAGAATAGTTAATAATGAGATCATCATTTTAGGAAATGATGCGGAACTGGGTAGTGACATTGATCCGGAAGAAGCTCAACAGGCACTTGAAATAGCCGAAGCTAACGTGAGTAGAGCTGAGGGTACGAAAGAATTGGTTGAAGCGAAGGTAGCTCTCAGACGAGCTAGGATACGAGTCGAGGCTGCCGGAGGCAGACCTAAGTCAAGGTCTACGGTTCGAATCCGTATAGCCCTAATATGTCCTTTGCTAATTCTCAAACTACGGAACCAACTGCTTTCGCACCGGGGGAACAAGATCCGTTTCAAGGACCCTAAGAATTTGGAAGATATCTCGAGAAAAGGTTTTAGCACCGGTCTCTCATATATGTACTCCAGTTTATCCGAAGTATCCCAATGGTGTAAGACCGTCGACTATTTGGGAAAAAGGAGGAAAATCACTCTGATCTCAGATTTCGGAGAAATAAGTGGCTCACGAGGAATGGAGAGACAGATTCTCTATTTGATCTCGAAGTCCTCATATAACACTTCTTCCAGTCGGATCACTTGTTGGAAAAAAATAATGCTCACACATGTTCCACACGGGCAAGGAAGCATAATCTAA
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| Protein seq | MELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNLEESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGNGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEGTKELVEAKVALRRARIRVEAAGGRPKSRSTVRIRIALICPLLILKLRNQLLSHRGNKIRFKDPKNLEDISRKGFSTGLSYMYSSLSEVSQWCKTVDYLGKRRKITLISDFGEISGSRGMERQILYLISKSSYNTSSSRITCWKKIMLTHVPHGQGSII |
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| Function | ATP synthase subunit beta, chloroplastic [UniProtKB/Swiss-Prot:P12085] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0036150 | OsARC_03g0036150.01 | Chr03 | 33863868 | 33866803 | - | NAM | ||
| CDS seq | ATGGAATTAATCAACAATATTGCTAAAGCTCACGGGGGCGTATCCGTATTTGGCGGAGTAGGGGAACGGACTCGTGAAGGAAATGATCTTTATATGGAAATGAAGGAATCTGGAGTAATTAATGAAAAAAATCTTGAGGAATCAAAGGTAGCTCTAGTCTATGGCCAAATGAATGAACCGCCAGGAGCTCGTATGAGAGTTGGTTTGACTGCCCTAACTATGGCAGAATATTTCCGAGATGTTAATAAGCAAGACGTGCTTCTATTCATCGATAATATCTTTCGTTTTGTTCAAGCAGGATCGGAGGTATCTGCCTTATTAGGGAGAATGCCCTCTGCAGTGGGTTATCAACCTACTCTTAGTACAGAAATGGGTTCTTTGCAAGAAAGAATTACTTCTACTAAAAAGGGATCTATAACTTCGATCCAAGCGGTTTATGTACCTGCGGACGATTTGACCGACCCTGCTCCTGCTACAACATTTGCACATTTGGATGCTACTACCGTACTTTCCAGAGGATTAGCTTCCAAAGGGATTTATCCTGCAGTAGATCCTTTAGATTCAACCTCAACTATGTTACAACCTCGGATCGTTGGCAACGAACATTATGAAACTGCGCAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACTTCAGGACATTATCGCAATTCTTGGGTTGGATGAATTATCGGAGGAGGATCGTTTAACTGTAGCAAGAGCACGAAAAATTGAGCGCTTCTTATCACAACCGTTTTTTGTGGCAGAAGTTTTTACCGGTTCTCCGGGAAATGGCCAAATTGGCGTATTACCAAACCACGCCCCCATTAACACAGCTGTAGATATGGGTCCCTTGAGAATACGCCTCCTCAACGATCAATGGTTAACGGCGGTTCTGTGGAGCGGTTTTGCCAGAATAGTTAATAATGAGATCATCATTTTAGGAAATGATGCGGAACTGGGTAGTGACATTGATCCGGAAGAAGCTCAACAGGCACTTGAAATAGCCGAAGCTAACGTGAGTAGAGCTGAGGGTACGAAAGAATTGGTTGAAGCGAAGGTAGCTCTCAGACGAGCTAGGATACGAGTCGAGGCTGCCGGAGGCAGACCTAAGTCAAGGTCTACGGTTCGAATCCGTATAGCCCTAATATGTCCTTTGCTAATTCTCAAACTACGGAACCAACTGCTTTCGCACCGGGGGAACAAGATCCGTTTCAAGGACCCTAAGAATTTGGAAGATATCTCGAGAAAAGGTTTTAGCACCGGTCTCTCATATATGTACTCCAGTTTATCCGAAGTATCCCAATGGTGTAAGACCGTCGACTATTTGGGAAAAAGGAGGAAAATCACTCTGATCTCAGATTTCGGAGAAATAAGTGGCTCACGAGGAATGGAGAGACAGATTCTCTATTTGATCTCGAAGTCCTCATATAACACTTCTTCCAGTCGGATCACTTGTTGGAAAAAAATAATGCTCACACATGTTCCACACGGGCAAGGAAGCATAATCTAA
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| Protein seq | MELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNLEESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGNGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEGTKELVEAKVALRRARIRVEAAGGRPKSRSTVRIRIALICPLLILKLRNQLLSHRGNKIRFKDPKNLEDISRKGFSTGLSYMYSSLSEVSQWCKTVDYLGKRRKITLISDFGEISGSRGMERQILYLISKSSYNTSSSRITCWKKIMLTHVPHGQGSII
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0036150 | OsARC_03g0036150.02 | Chr03 | 33865708 | 33866525 | - | IsoSeq | ||
| CDS seq | ATGTTAATAAGCAAGACGTGCTTCTATTCATCGATAATATCTTTCGTTTTGTTCAAGCAGGATCGGAGGTATCTGCCT |
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| Protein seq | MLISKTCFYSSIISFVLFKQDRRYLP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 102.647377 | 21.123169 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g076889C | RBH | 476.048920 | 452.614532 | 178.409607 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g55874 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0120732 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036440 | SBH | 195.072189 | 54.160545 | 311.076752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035950 | SBH | 147.126724 | 13.097737 | 157.906006 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036330 | SBH | 194.305023 | 25.919641 | 201.237839 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003240 | RBH | 0.134497 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0017700 | SBH | 557.515228 | 43.3410945 | 37.409964 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0001460 | SBH | 184.577347 | 9.882667 | 86.070229 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0019500 | SBH | 85.8620225 | 5.305676 | 7.5884395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0001500 | SBH | 103.812248 | 1.650233 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0001430 | SBH | 140.013885 | 48.600990 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002990 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003370 | SBH | 2.454788 | 2.142269 | 3.607090 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0001500 | SBH | 45.919033 | 19.697384 | 146.525360 |
