Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0001500 | OGI:01056340 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:1263433-1268008 | ||||||||
| Gene Symbol | AtpB | ||||||||||
| DNA seq | gtatcaactaaaccgttgggttgtcttcaattagatgggggaatccaattaacagcctcgactcgtatcctagctcgtctgagagctaccttcgcttcaaccaattctttcgtaccctcagctctactcacgttagcttcggctatttcaagtgcctgttgagcttcttccaatcaatgtcactacccagttccgcatcatttcctaaaatgatgatcttattattaactattctggcaaaaccgctccacagaaccgccgttaaccattgatcgttgaggaggcgtattctcaagggacccatatctacagctgtgttaatgggggcgtggtttggtaatacgccaatttggccactattagtagataaaatgatttctttcacttcacaatcccaaataattcgcttaggagtcagtacataaagatttaatttcatttcttcaatttgttctcctcttctaagtttatagctttcgtgctagcttcatcgatgttacccaccaaataaaaagcctgttcaggtaggccgtctaattctccggaaaggattagttgaaatcccctaatagtttctgcaagaccaacatacttacccggagaaccggtaaaaacttctgccacaaaaaacggttgtgataagaagcgctcaatttttcgtgttcttgctacagttaaacgatcctcctccgataattcatccaacccaagaattgcgataatgtcctgaagttctttgtaacgttgtaaagtttgcttaactctttgcgcagtttcataatgttcgttgccaacgatccgaggttgtaacatagttgaggttgaatctaaaggatctactgcaggataaatccctttggaagctaatcctctggaaagtacggtagtagcattgtcacaccccgaagttctcctcccaagcctaaaatttaatttataagagaccctaagaaaataccggtgcaaagcaggagtaaacccttttaaatcaatgcaaataataattggaatgggcatgtggaatttttcttgagttctacatgtcgaaattcactaacagaatttttagtggaattttcagagccctagaaataattttgaccgattaaaattgagcataagcaatatttaaatccctggaaattcctttcttcctttttctttcttttttttctttttccttttcccttagtaggccgccggcccacttcccctcctctctccccgcgccttgctgggccggccggaggccacgccccagctcagcccgcgccccctcctccctcccagggtcaccgacaggtggggcccacctgtcggacccgtccccttcctcgtgccgcgccgccgcgcccgcaccagccgccgcgcccacgcctccgcctcttccgggccacgtcggccacgcccgcgcgtgcaccgcgtctcccgcgcccactcccctctctctcccgcccgcgcctgcgcccgagatggccgggattcgattttcgaatcccgcctctctctcctcccctactcccccacgttggccggcgattcccgcctctcccggccacgtctggccccctctctccctatttaagctctgccgccaccccctctctcTttttccccatttcgccgaactctcccgagctctccatcactcccgcaccgtgcatccgcccgccgccgcctttcccgtcactccggccgccgctagccgccgcaccgcaccatcgccgccgtcgggttcgcgtggccaagatccaccccgtccacccctccttcgtcgaggttcgccgccggagcgccattcccactgtgcgacggtgagagtcgccatgtccgccaccttcggccagtgttcccgccttctatggcccctctctccctctctaatcttttccttttcgttctttaggtcgtcccggtccccgttcgccgcgtgtcgacctccctccgtcgctcctcgtcgccgtcccctccggtgaggactccctcccctttcctttccttccccgattccccgtgcgccgctgccacccgcgctcgccgtcgccttcggtcgccgtcgccgccggggcgccgtccgctgccgccgcccgcgccgccgcttgccgtcgccggtggacgtgcgcgtgccgccacccttgccatggccggccggtcggctttgtgccgagccgagccgagccaggccgccgccgcaccgtccgatcggccccgagggcgatctgggccgtcggtcccgtggaccggtggtggaccacccgcgtggtcccggtccgcggtgaaccgccctcccccttgagtcgctgaccggtgggccctgcgtgccggcgcccctttcctccctctcccgagccgctgaccggtggaccccgcatgtcggcgccgcgccccttgatgacgtcagccctgggatttattgcgcaataaatgatttaaggtttttcttttatagtaataaacccagtgaattttctaaaattcataactaattcatccgagctccgtttaatcccattcaagtctcagtaaatcaagaaaaatgtgtagaatcaattaaaattggttttgttccctgtttcagtagtcttatagcctatttgcaatgtttgccttgtatgtcgctagattccggttcctccgacgctccggtgtacttcgaaatagtcgccgaggttcctccagcagcagagcaaggcaagtcatgcttgccacttgaacatgttgatcctatattgcaaatgctctattgtttttcttcaaatactgcatcgttttataatgtcactatgggatgtttacctattgtcatagccatgctattgttgtaccatgtccctttgtcagcttggggttataacatgactagagattggactagggattgcttagccatgcttagttcaactagtgcacaatggggaagatcttattaatgtttaggctgttggttctaatggttttgttggattagtgccaccgctttggtgttggttaattaaaataaatcacatggtgggctgtgggtgcatggttttgctggtcgcacccatggcagttaaggaccggttcgcgggatgccctggaagaacttatcgtacgtaccacaagccagcgtgggcaacggctaggcttgtagtgtagctttcctctagtcgacgcatccaggcaagggtgggcgtgatggagcggggcgggccctgcgacggcctctgtcgcttccggattcacctaggcacgagaggggactgcccgttgcccgctggggacgggggtgaaacctgaggtgtggtgtgcttggctagagggggttatgcgaagggtcctgtcacggcctctttctggtatgtcgtggtggcatgtcggcgcacggaaacgtgtcgtggggctgtgtcttgtgggtacagttgtacacctctgatcagagaaaaactattcgaatagccgtgcccgcggttatgggcggttaaccagattcaccgtgattagtctcaccctagtgtaatccttggaatttggatagtataggtggatggttgggcctgttgcaacgtgggatagcgttggacagtggatagttaatattaattaattattacatctgtttaaatctctcaacttctgtttataaatgctcgctttatacaaatgaattaccctagctctcctttgataattccctgcatcatacccctattccggtatgatttgctgagtacagtgggtagtactcagtcttgctctattttttcccaaccccagagcacgagtatgtgtcagatgaaggtttctccgaggagtaggcttcgtccgtgccatcgaggatgcctgtggagtggtgttcccgctgcagttctagtcaaggcttagctcctgttgtctttctttctttccgctgcatttatgtaatacttttatgatgtttgtaagacgtggatctgaatgtaaacattgtcgtttgtgtaccccggccggtcctggacggggattttaatgcacattctgcttggaattctattcgggaatttctgggcgtgacaagcatccaaatgtgcaaatgttgtagcaggagcagggtcggtcaaatcgtccgcaggtacataaaccgcttggatcgaagttatagatccctttttagtagaagtaattctttcttgcaaagaacccatttctgtactaagagtaggttgataacccactgcagagggcattctccctaataaggcagatacctccgatcctgcttgaacaaaacgaaagatattatcgatgaatagaagcacgtcttgcttattaacatctcggaaatattctgccatagttagggcagtcaaaccaactctcatacgagctcctggcggttcattcatttggtcatagactagagctacctttgattcctcaagatttttttcattaattactccagattccttcatttgcatataaagatcattttcttcaggatgcaggtcctctgcagtagtgcatgtacagtactgctcactgacatgtgggtgcagaggatctcaattgtttccttcacgagtccgttcccctactccgccaaatacggatacgc
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| CDS seq | gtatccgtatttggcggagtaggggaacggactcgtgaaggaaatgatctttatatgcaaatgaaggaatctggagtaattaatgaaaaaaatcttgaggaatcaaaggtagctctagtctatgaccaaatgaatgaaccgccaggagctcgtatgagagttggtttgactgccctaactatggcagaatatttccgagatgttaataagcaagacgtgcttctattcatcgataatatctttcgttttgttcaagcaggatcggaggtatctgccttattagggagaatgccctctgcagtgggttatcaacctactcttagtacagaaatgggttctttgcaagaaagaattacttctactaaaaagggatctataacttcgatccaagcggtttatgtacctgcggacgatttgaccgaccctgctcctgctacaacatttgcacatttggatgctactaccgtactttccagaggattagcttccaaagggatttatcctgcagtagatcctttagattcaacctcaactatgttacaacctcggatcgttggcaacgaacattatgaaactgcgcaaagagttaagcaaactttacaacgttacaaagaacttcaggacattatcgcaattcttgggttggatgaattatcggaggaggatcgtttaactgtagcaagaacacgaaaaattgagcgcttcttatcacaaccgttttttgtggcagaagtttttaccggttctccgggtaagtatgttggtcttgcagaaactattaggggatttcaactaatcctttccggagaattagacggcctacctgaacaggctttttatttggtgggtaacatcgatgaagctagcacgaaagctataaacttagaagaggagaacaaattgaag
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| Protein seq | VSVFGGVGERTREGNDLYMQMKESGVINEKNLEESKVALVYDQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARTRKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEASTKAINLEEENKLK |
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| Function | ATP synthase subunit beta, chloroplastic [UniProtKB/Swiss-Prot:P12085] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0001500 | OsLima_06g0001500.01 | Chr06 | 1267547 | 1267796 | - | NAM | ||
| CDS seq | atgaatgaaccgccaggagctcgtatgagagttggtttgactgccctaactatggcagaatatttccgagatgttaataagcaagacgtgcttctattcatcgataatatctttcgttttgttcaagcaggatcggagggagaatgccctctgcagtgggttatcaacctactcttagtacagaaatgggttctttgcaagaaagaattacttctactaaaaagggatctataa
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| Protein seq | MNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEGECPLQWVINLLLVQKWVLCKKELLLLKRDL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0001500 | OsLima_06g0001500.02 | Chr06 | 1263433 | 1268008 | - | IsoSeq | ||
| CDS seq | gtatccgtatttggcggagtaggggaacggactcgtgaaggaaatgatctttatatgcaaatgaaggaatctggagtaattaatgaaaaaaatcttgaggaatcaaaggtagctctagtctatgaccaaatgaatgaaccgccaggagctcgtatgagagttggtttgactgccctaactatggcagaatatttccgagatgttaataagcaagacgtgcttctattcatcgataatatctttcgttttgttcaagcaggatcggaggtatctgccttattagggagaatgccctctgcagtgggttatcaacctactcttagtacagaaatgggttctttgcaagaaagaattacttctactaaaaagggatctataacttcgatccaagcggtttatgtacctgcggacgatttgaccgaccctgctcctgctacaacatttgcacatttggatgctactaccgtactttccagaggattagcttccaaagggatttatcctgcagtagatcctttagattcaacctcaactatgttacaacctcggatcgttggcaacgaacattatgaaactgcgcaaagagttaagcaaactttacaacgttacaaagaacttcaggacattatcgcaattcttgggttggatgaattatcggaggaggatcgtttaactgtagcaagaacacgaaaaattgagcgcttcttatcacaaccgttttttgtggcagaagtttttaccggttctccgggtaagtatgttggtcttgcagaaactattaggggatttcaactaatcctttccggagaattagacggcctacctgaacaggctttttatttggtgggtaacatcgatgaagctagcacgaaagctataaacttagaagaggagaacaaattgaag
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| Protein seq | VSVFGGVGERTREGNDLYMQMKESGVINEKNLEESKVALVYDQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARTRKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEASTKAINLEEENKLK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 103.812248 | 1.650233 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0120732 | RBH | 4.047935 | 4.962165 | 1.571353 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g02980 | RBH | 34.785397 | 34.976414 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0120732 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0001570 | RBH | 16.246969 | 0.0 | 24.659756 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0001450 | RBH | 7.034633 | 0.000000 | 0.752392 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0001410 | RBH | 32.531296 | 0.000000 | 35.993195 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0024820 | SBH | 0.649428 | 4.557499 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018040 | SBH | 2594.177490 | 135.457016 | 1458.653687 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0017700 | RBH | 557.515228 | 43.3410945 | 37.409964 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0001460 | RBH | 184.577347 | 9.882667 | 86.070229 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0019500 | RBH | 85.8620225 | 5.305676 | 7.5884395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017860 | RBH | 150.555099 | 0.800298 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0001430 | RBH | 140.013885 | 48.600990 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017900 | SBH | 3112.340576 | 184.527969 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0009810 | RBH | 3.840627 | 0.0 | 1.804389 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017970 | SBH | 228.366791 | 25.746792 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G001360 | RBH | 73.330353 | 36.706539 | 135.233261 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0001500 | RBH | 45.919033 | 19.697384 | 146.525360 |
