Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0017860 | OGI:05056570 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:22048075-22050431 | ||||||||
| Gene Symbol | AtpB, RMtATPb, atpB, AtpB, - | ||||||||||
| DNA seq | ttaattcctggcgatcgatcgaaacgaaaatgtgcttagctgtgcaacatcgaattccttggctactcgtgcaacagtctgcacagtgccacagtggtacagggagcaaggcgcagtcctgcaaccaaacggcgaagtgagcgttagagcgtacctcaaccgaccggttagttttcctggactggaagcagctcacccgggtcataaaacccaggtactcaataattatttttttagtggtacacgacgtaccagtcaacagtaaagtgtttatggtaactttactaattttaaaatatatcgggtcggtctttgaagatatttatagagatagggtatgtgcacgtttatagatgcgagtgtgcgcgtgttataagcgtaccgtgttttaaaaaaggaataagttcactttgtgacccttaaaagtaatagaaatctaatccatgaccctaaaccgcaaaaccagatatctcgaccctcaaactcttaaaaccggtgcaatttgactccctcggcggttttgctgacgtggcgcttgcgtggcattagaattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatctgcaagaccaacatactttcccggagaaccggtaaaaacttctgccacaaaaaacggttgtgataagaagcgctcaatttttcgtgctcttgctacagttaaacgatcctcctccgataattcatccaacccaagaattgcgataatgtcctgaagttctttgtaacgttgtaaagtttgcttaactctttgcgcagtttcataatgttcgttgccaacgatccgaggttgtaacatagttgaggttgaatctaaaggatctactgcaggataaatccctttggaagctaatcctctggaaagtacggtagtagcatccaaatgtgcaaatgttgtagcaggagcagggtcggtcaaatcgtccacaggtacataaaccgcttggatcgaagttatagatccctttttagtagaagtaattctttcttgcaaagaacccatttctgtactaagagtaggttgataacccactgcagagggcattctccctaataaggcagatacctccgatcctgcttgaacaaaacgaaagatattattgatgaatagaagcacgtcttgcttattaacatctcggaaatattctgccatagttagggcagtcaaaccaactctcatacgagctcctggcggttcattcatttggccatagactagagctacctttgattcctcaagatttttttcattaattactccagattccttcatttccatataaagatcatttccttcacgagtccgttcccctactccgccaaatacggatacgcccccgtgagctttagcaatattgttgattaattccatgatgagtcctgttttacctactccagctcccccaaatagtccgatttttcctccacgccgataaggagctaaaagatcgaccaccttaataccaatttcaaagatggataatttcgtatctaactcgataaaggcgggcgcggatctatgaatagggaatgttgcactagtatctacaggacccaaattgtcaacaggctccccaagaacgttgaaaattcgtccaagagtagctccactgacaggaacactgagaggagctcccgtgtcaatcacttccattcctctcatcaacccatctgtagcactcatagctacagctctaactcgattatttcctaataattgttgtacctcacaaattacattaatttgcttaccgtcagtgtctcgactcttgactaccaaagcattataaatataaggtaacttgcccgggggaaaagtgacatccagcacgggtccaataatttgatcgatacgccctgtacttttttcttcaattgtagaaaccccgggacgagagtagtaggattggttctcataattatcacataattttcaaaaaaaggaatttatcgaaactttggtttttttttcttgttgaataatgccaaatcaacaccaaaaaaatatccaaaaatccaaaagtcaaaaggaaatgaattagttaattcaataagagagaaaaggggaccagcacttgatttcattgcccaaacgaatcccattcaatcgtttactcatggaatgagtccgtcggaaagttcgatcaatctttttttcatatacattttgccttttgtaaacgatttgtgcctactctactttcttatccaggacttcgatatac
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| CDS seq | atgagtgctacagatgggttgatgagaggaatggaagtgattgacacgggagctcctctcagtgttcctgtcagtggagctactcttggacgaattttcaacgttcttggggagcctgttgacaatttgggtcctgtagatactagtgcaacattccctattcatagatccgcgcccgcctttatcgagttagatacgaaattatccatctttgaaattggtattaaggtggtcgatcttttagctccttatcggcgtggaggaaaaatcggactatttgggggagctggagtaggtaaaacaggactcatcatggaattaatcaacaatattgctaaagctcacgggggcgtatccgtatttggcggagtaggggaacggactcgtgaaggaaatgatctttatatggaaatgaaggaatctggagtaattaatgaaaaaaatcttgaggaatcaaaggtagctctagtctatggccaaatgaatgaaccgccaggagctcgtatgagagttggtttgactgccctaactatggcagaatatttccgagatgttaataagcaagacgtgcttctattcatcaataatatctttcgttttgttcaagcaggatcggaggtatctgccttattagggagaatgccctctgcagtgggttatcaacctactcttagtacagaaatgggttctttgcaagaaagaattacttctactaaaaagggatctataacttcgatccaagcggtttatgtacctgtggacgatttgaccgaccctgctcctgctacaacatttgcacatttggatgctactaccgtactttccagaggattagcttccaaagggatttatcctgcagtagatcctttagattcaacctcaactatgttacaacctcggatcgttggcaacgaacattatgaaactgcgcaaagagttaagcaaactttacaacgttacaaagaacttcaggacattatcgcaattcttgggttggatgaattatcggaggaggatcgtttaactgtagcaagagcacgaaaaattgagcgcttcttatcacaaccgttttttgtggcagaagtttttaccggttctccgggaaagactgcgccttgctccctgtaccactgtggcactgtgcagactgttgcacgagtagccaaggaattcgatgttgcacagctaagcacattttcgtttcgatcgatcgccaggaattaa
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| Protein seq | MSATDGLMRGMEVIDTGAPLSVPVSGATLGRIFNVLGEPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFEIGIKVVDLLAPYRRGGKIGLFGGAGVGKTGLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNLEESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFINNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVPVDDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKTAPCSLYHCGTVQTVARVAKEFDVAQLSTFSFRSIARN |
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| Function | ATP synthase subunit beta, chloroplastic [UniProtKB/Swiss-Prot:P12085] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0017860 | OsLima_05g0017860.01 | Chr05 | 22048075 | 22050431 | - | NAM | ||
| CDS seq | atgagtgctacagatgggttgatgagaggaatggaagtgattgacacgggagctcctctcagtgttcctgtcagtggagctactcttggacgaattttcaacgttcttggggagcctgttgacaatttgggtcctgtagatactagtgcaacattccctattcatagatccgcgcccgcctttatcgagttagatacgaaattatccatctttgaaattggtattaaggtggtcgatcttttagctccttatcggcgtggaggaaaaatcggactatttgggggagctggagtaggtaaaacaggactcatcatggaattaatcaacaatattgctaaagctcacgggggcgtatccgtatttggcggagtaggggaacggactcgtgaaggaaatgatctttatatggaaatgaaggaatctggagtaattaatgaaaaaaatcttgaggaatcaaaggtagctctagtctatggccaaatgaatgaaccgccaggagctcgtatgagagttggtttgactgccctaactatggcagaatatttccgagatgttaataagcaagacgtgcttctattcatcaataatatctttcgttttgttcaagcaggatcggaggtatctgccttattagggagaatgccctctgcagtgggttatcaacctactcttagtacagaaatgggttctttgcaagaaagaattacttctactaaaaagggatctataacttcgatccaagcggtttatgtacctgtggacgatttgaccgaccctgctcctgctacaacatttgcacatttggatgctactaccgtactttccagaggattagcttccaaagggatttatcctgcagtagatcctttagattcaacctcaactatgttacaacctcggatcgttggcaacgaacattatgaaactgcgcaaagagttaagcaaactttacaacgttacaaagaacttcaggacattatcgcaattcttgggttggatgaattatcggaggaggatcgtttaactgtagcaagagcacgaaaaattgagcgcttcttatcacaaccgttttttgtggcagaagtttttaccggttctccgggaaagactgcgccttgctccctgtaccactgtggcactgtgcagactgttgcacgagtagccaaggaattcgatgttgcacagctaagcacattttcgtttcgatcgatcgccaggaattaa
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| Protein seq | MSATDGLMRGMEVIDTGAPLSVPVSGATLGRIFNVLGEPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFEIGIKVVDLLAPYRRGGKIGLFGGAGVGKTGLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNLEESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFINNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVPVDDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKTAPCSLYHCGTVQTVARVAKEFDVAQLSTFSFRSIARN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 150.555099 | 0.800298 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0553000 | SBH | 8.112918 | 9.651805 | 53.495941 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g35320 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0553000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017940 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017940 | RBH | 65.617912 | 8.382897 | 67.886055 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017760 | RBH | 95.055672 | 7.138235 | 87.003059 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017800 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018040 | RBH | 2594.177490 | 135.457016 | 1458.653687 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0321300 | RBH | 4556.696533 | 300.042511 | 311.625824 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017530 | RBH | 242.378647 | 6.233304 | 101.943016 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0332700 | RBH | 3890.892944 | 145.379814 | 236.1027605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0001500 | RBH | 103.812248 | 1.650233 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017770 | RBH | 260.262146 | 75.550835 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017900 | RBH | 3112.340576 | 184.527969 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0017940 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017970 | RBH | 228.366791 | 25.746792 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017450 | RBH | 24.367603 | 6.868968 | 53.431297 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017740 | RBH | 446.197113 | 153.654099 | 868.082825 |
