Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0004300 | OGI:01056340 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:3386921-3387790 | ||||||||
| Gene Symbol | AtpB, - | ||||||||||
| DNA seq | aaaaggttgtcagccgggtgttgtgctgctgctcctctgttccgttcccatgcatggacggatggaccaatggacctcaactatgttacaacctcggatagttggcaacgaacattatgaaactgcgcaaagagttaagcaaactttacaatgttacaaagaacttcaggatattatcgcaattcttgggttggatgaattatcggaggaggatcgtttaactgtagcaagagcacgaaaaattgagcgcttcttatcacaaccgttttttgtggcagaagtttttaccggttctccggaaaagtatgttggtcttgcagaaactattaggggatttcaactaatcctttctggagaattagacggcctacccgaacaggctttttatttggtgggtaacatcgataaagctagcacgaaagctataaacttagaagaggagaacaaattgaagaaatgaaattaaatctttatgtactgactcctaagcgaattatttaggattgtgaagtgaaagaaatcattttatctactaatagtggccaaattggcgtattaccaaaccacgcccccattaacacagctgtagatatgggtcccttgagaatacgcctcctcaacgatcaatggttaacggcggttctgtggagcggttttgccagaatagttaataatgagatcatcattttaggaaatgatgcggaactgggtagtgacattgatccggaagaagctcaacaggcacttgaaatagccgaagctaacgtgagtagagctgagggtacgaaagaattggttgaagcgaaggtagctctcagacgagctaggatacgagtcgaggctgttaattggattcccccatctaattga
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| CDS seq | atgcatggacggatggaccaatggacctcaactatgttacaacctcggatagttggcaacgaacattatgaaactgcgcaaagagttaagcaaactttacaatgttacaaagaacttcaggatattatcgcaattcttgggttggatgaattatcggaggaggatcgtttaactgtagcaagagcacgaaaaattgagcgcttcttatcacaaccgttttttgtggcagaagtttttaccggttctccggaaaagtatgttggtcttgcagaaactattaggggatttcaactaatcctttctggagaattagacggcctacccgaacaggctttttatttggattgtgaagtgaaagaaatcattttatctactaatagtggccaaattggcgtattaccaaaccacgcccccattaacacagctgtagatatgggtcccttgagaatacgcctcctcaacgatcaatggttaacggcggttctgtggagcggttttgccagaatagttaataatgagatcatcattttaggaaatgatgcggaactgggtagtgacattgatccggaagaagctcaacaggcacttgaaatagccgaagctaacgtgagtagagctgagggtacgaaagaattggttgaagcgaaggtagctctcagacgagctaggatacgagtcgaggctgttaattggattcccccatctaattga
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| Protein seq | MHGRMDQWTSTMLQPRIVGNEHYETAQRVKQTLQCYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPEKYVGLAETIRGFQLILSGELDGLPEQAFYLDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEGTKELVEAKVALRRARIRVEAVNWIPPSN |
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| Function | ATP synthase epsilon chain, chloroplastic [UniProtKB/Swiss-Prot:P0C2Z3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0004300 | OsCMeo_01g0004300.01 | Chr01 | 3386921 | 3387790 | + | NAM | ||
| CDS seq | atgcatggacggatggaccaatggacctcaactatgttacaacctcggatagttggcaacgaacattatgaaactgcgcaaagagttaagcaaactttacaatgttacaaagaacttcaggatattatcgcaattcttgggttggatgaattatcggaggaggatcgtttaactgtagcaagagcacgaaaaattgagcgcttcttatcacaaccgttttttgtggcagaagtttttaccggttctccggaaaagtatgttggtcttgcagaaactattaggggatttcaactaatcctttctggagaattagacggcctacccgaacaggctttttatttggattgtgaagtgaaagaaatcattttatctactaatagtggccaaattggcgtattaccaaaccacgcccccattaacacagctgtagatatgggtcccttgagaatacgcctcctcaacgatcaatggttaacggcggttctgtggagcggttttgccagaatagttaataatgagatcatcattttaggaaatgatgcggaactgggtagtgacattgatccggaagaagctcaacaggcacttgaaatagccgaagctaacgtgagtagagctgagggtacgaaagaattggttgaagcgaaggtagctctcagacgagctaggatacgagtcgaggctgttaattggattcccccatctaattga
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| Protein seq | MHGRMDQWTSTMLQPRIVGNEHYETAQRVKQTLQCYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPEKYVGLAETIRGFQLILSGELDGLPEQAFYLDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEGTKELVEAKVALRRARIRVEAVNWIPPSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 43.506924 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0685800 | SBH | 13.888079 | 14.160533 | 82.462624 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g58000 | SBH | 208.948624 | 206.972733 | 31.775543 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0685800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0004310 | RBH | 74.608734 | 29.430992 | 134.498795 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035950 | SBH | 147.126724 | 13.097737 | 157.906006 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007600 | SBH | 336.661255 | 52.046642 | 321.398499 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035720 | SBH | 21.455843 | 0.987112 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028360 | SBH | 32.971130 | 348.798492 | 283.181335 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0155600 | SBH | 4693.512451 | 358.1262665 | 325.453857 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028260 | SBH | 3.153829 | 212.338226 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028560 | SBH | 19.349724 | 240.978226 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002990 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028500 | SBH | 1.366585 | 123.459480 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003370 | SBH | 2.454788 | 2.142269 | 3.607090 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009700 | SBH | 171.282562 | 61.221684 | 397.537872 |
