Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0225250 | OGI:04026550 | 1/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:8346834-8347622 | ||||||||
| Gene Symbol | RLCK138, OsRLCK138, SDK5 | ||||||||||
| DNA seq | CACAACAGAGTATTCTGTTAAAGCTGCAAGTAAGCCGTGGCATAGGAGGCATATCAAGCTCCTGTAAACCCTCGAGAACCCGGACCACTTCATTCATTGTTGGCCGATCAAACTCATTCTCTTGTATGCACCAACATGCAACTTTGCAAACTCTTTCAGCCTCTAATATACTGAAGTCACCATTTAACTGCGGGTCTACCAAACTCCGGACATCTCCTTCATGAAGCTTGCTAATGGCTTGCACAGGGAAAAAAAGACAACTTGATCACTATTGTCATCAGTATGTACTTTATGTGAATTCCTTCTTCCTGATAAGATTTTCAACAATATCATACCAAAGCTATAAACATCAACTTTTGGTGTAATAGCAACTCCACTAATCCACTCTGGAGCAAGATATCCTACTGTGCCTCTGAATGTAGTCAAAACTCGGCTAAAATTTCTTCCTACAAATGCTGCCATCCCAAAGTCTGCAATTTTAGGAGCAAACGATACATCCAGAAGTATGTTTTCTGGCTTAATATCACAATGTATGATGCATTCGTTGCAGCTATGATGCAAGTAGGACAATCCTCTAGCAACTCCTATGGCTAGGTTATACCTGGTGGTCCAATTCAGAATAGTAGCCTTGCTCTGAAATAGATGGGCATCAAGAGAACCATTTACCATGTGTTCATACACAAGTAGCCTCTCATCACCTTCACAACAGAAACCGATCAATTTGATAAAGTTGATATGTTGGATCAATCTAGTTGAGCTCACCTCAGCCCTGAATTGAGCGTACTTGCG
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| CDS seq | CGCAAGTACGCTCAATTCAGGGCTGAGGTGAGCTCAACTAGATTGATCCAACATATCAACTTTATCAAATTGATCGGTTTCTGTTGTGAAGGTGATGAGAGGCTACTTGTGTATGAACACATGGTAAATGGTTCTCTTGATGCCCATCTATTTCAGAGCAAGGCTACTATTCTGAATTGGACCACCAGGTATAACCTAGCCATAGGAGTTGCTAGAGGATTGTCCTACTTGCATCATAGCTGCAACGAATGCATCATACATTGTGATATTAAGCCAGAAAACATACTTCTGGATGTATCGTTTGCTCCTAAAATTGCAGACTTTGGGATGGCAGCATTTGTAGGAAGAAATTTTAGCCGAGTTTTGACTACATTCAGAGGCACAGTAGGATATCTTGCTCCAGAGTGGATTAGTGGAGTTGCTATTACACCAAAAGTTGATGTTTATAGCTTTGGTATGATATTGTTGAAAATCTTATCAGGAAGAAGGAATTCACATAAAGTACATACTGATGACAATAGTGATCAAGTTGTCTTTTTTTCCCTGTGCAAGCCATTAGCAAGCTTCATGAAGGAGATGTCCGGAGTTTGGTAG
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| Protein seq | RKYAQFRAEVSSTRLIQHINFIKLIGFCCEGDERLLVYEHMVNGSLDAHLFQSKATILNWTTRYNLAIGVARGLSYLHHSCNECIIHCDIKPENILLDVSFAPKIADFGMAAFVGRNFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGMILLKILSGRRNSHKVHTDDNSDQVVFFSLCKPLASFMKEMSGVW |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0225250 | Os04t0225250-00 | Chr04 | 8346834 | 8347622 | - | irgsp1_rep | ||
| CDS seq | CGCAAGTACGCTCAATTCAGGGCTGAGGTGAGCTCAACTAGATTGATCCAACATATCAACTTTATCAAATTGATCGGTTTCTGTTGTGAAGGTGATGAGAGGCTACTTGTGTATGAACACATGGTAAATGGTTCTCTTGATGCCCATCTATTTCAGAGCAAGGCTACTATTCTGAATTGGACCACCAGGTATAACCTAGCCATAGGAGTTGCTAGAGGATTGTCCTACTTGCATCATAGCTGCAACGAATGCATCATACATTGTGATATTAAGCCAGAAAACATACTTCTGGATGTATCGTTTGCTCCTAAAATTGCAGACTTTGGGATGGCAGCATTTGTAGGAAGAAATTTTAGCCGAGTTTTGACTACATTCAGAGGCACAGTAGGATATCTTGCTCCAGAGTGGATTAGTGGAGTTGCTATTACACCAAAAGTTGATGTTTATAGCTTTGGTATGATATTGTTGAAAATCTTATCAGGAAGAAGGAATTCACATAAAGTACATACTGATGACAATAGTGATCAAGTTGTCTTTTTTTCCCTGTGCAAGCCATTAGCAAGCTTCATGAAGGAGATGTCCGGAGTTTGGTAG
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| Protein seq | RKYAQFRAEVSSTRLIQHINFIKLIGFCCEGDERLLVYEHMVNGSLDAHLFQSKATILNWTTRYNLAIGVARGLSYLHHSCNECIIHCDIKPENILLDVSFAPKIADFGMAAFVGRNFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGMILLKILSGRRNSHKVHTDDNSDQVVFFSLCKPLASFMKEMSGVW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0225250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g14840 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0165900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013120 | SBH | 0.040554 | 0.0 | 0.224593 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000160 | SBH | 0.096671 | 2.853943 | 1.208340 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013660 | SBH | 0.317009 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000170 | RBH | 0.069744 | 0.323755 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000140 | SBH | 0.605598 | 3.359040 | 4.364083 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0056100 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000160 | SBH | 0.381690 | 0.585906 | 0.808173 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0134200 | SBH | 2.0415695 | 2.0926975 | 0.019729 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000150 | SBH | 0.390810 | 0.135176 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000170 | SBH | 0.035487 | 3.797025 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000170 | RBH | 0.766307 | 8.266186 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000140 | SBH | 1.239633 | 0.798403 | 0.959144 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000150 | SBH | 0.0 | 4.059380 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000180 | RBH | 0.673993 | 2.495537 | 0.991814 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000120 | RBH | 0.342205 | 15.181497 | 3.611933 |
