Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g01750 | OGI:12001090 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:457260-457577 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGGCGTCGGTCGAGTGCGCGGTCTGCCTCAGCGTCGTCGACGAGGGGGAGAAGGTGAGGCAGCTCCCGGCGTGCGGGCATGTTTTCCACCAGGAGTGCATCAACATGTGGCTCTCGTCCCACGCCTCATGCCCGGTCTGCCACGGGAAGGCCGCGCCAGCCGACGAGCTTGCCGACGCCATAGCCGTGTGCATATCGGTGAAGCGCGACGTCGTCGTGCCAGCCTCCTCGCCGCCGCCGAGCTCGCCCGCCGGCTCTCCGCCCGCAGCTCGCATCCGTGCATGCCCATCGTCTCTCCGCCCGCCGCTGGCCTGA |
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| CDS seq | ATGGCGGCGTCGGTCGAGTGCGCGGTCTGCCTCAGCGTCGTCGACGAGGGGGAGAAGGTGAGGCAGCTCCCGGCGTGCGGGCATGTTTTCCACCAGGAGTGCATCAACATGTGGCTCTCGTCCCACGCCTCATGCCCGGTCTGCCACGGGAAGGCCGCGCCAGCCGACGAGCTTGCCGACGCCATAGCCGTGTGCATATCGGTGAAGCGCGACGTCGTCGTGCCAGCCTCCTCGCCGCCGCCGAGCTCGCCCGCCGGCTCTCCGCCCGCAGCTCGCATCCGTGCATGCCCATCGTCTCTCCGCCCGCCGCTGGCCTGA |
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| Protein seq | MAASVECAVCLSVVDEGEKVRQLPACGHVFHQECINMWLSSHASCPVCHGKAAPADELADAIAVCISVKRDVVVPASSPPPSSPAGSPPAARIRACPSSLRPPLA |
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| Function | E3 ubiquitin-protein ligase EL5 [UniProtKB/Swiss-Prot:Q9LRB7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g01750 | LOC_Os12g01750.1 | Chr12 | 457260 | 457577 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCGTCGGTCGAGTGCGCGGTCTGCCTCAGCGTCGTCGACGAGGGGGAGAAGGTGAGGCAGCTCCCGGCGTGCGGGCATGTTTTCCACCAGGAGTGCATCAACATGTGGCTCTCGTCCCACGCCTCATGCCCGGTCTGCCACGGGAAGGCCGCGCCAGCCGACGAGCTTGCCGACGCCATAGCCGTGTGCATATCGGTGAAGCGCGACGTCGTCGTGCCAGCCTCCTCGCCGCCGCCGAGCTCGCCCGCCGGCTCTCCGCCCGCAGCTCGCATCCGTGCATGCCCATCGTCTCTCCGCCCGCCGCTGGCCTGA
More
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| Protein seq | MAASVECAVCLSVVDEGEKVRQLPACGHVFHQECINMWLSSHASCPVCHGKAAPADELADAIAVCISVKRDVVVPASSPPPSSPAGSPPAARIRACPSSLRPPLA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0108350 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g02424 | SBH | 7.946958 | 7.405935 | 16.940969 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0108350 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000960 | SBH | 5.517438 | 0.0 | 34.921013 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003170 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001180 | SBH | 24.517052 | 0.0 | 120.651939 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001000 | SBH | 2.350385 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001150 | SBH | 55.302402 | 0.0 | 156.949142 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0007000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002580 | SBH | 0.0 | 0.084451 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0007200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000980 | SBH | 7.257802 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001130 | SBH | 44.296913 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001150 | SBH | 43.432896 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001100 | SBH | 19.479420 | 0.0 | 38.733665 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001180 | SBH | 0.808108 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001000 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001120 | SBH | 75.693802 | 0.0 | 185.052811 |
