Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0108350 | OGI:12001090 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:456609-460374 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGTGGTTTCACTGACGTAACATGTCAGAAAAAAAAATTAAAAAAAGTACATAGGCGCACATGCCAGCTGCACATATTTTTTCTTCTCTTTTCTTCTCCTCTCCTCTTTTCTCTCTTCTCTCCTCTTCTTCAGGCCAGCGGCGGGCGGAGAGCCGGAGAGACGATGGGCACGCGCGGATGCGAGCAGCGGGCGGAGCGGACGGCGGGCGAGCGCGGCGGCAGAGCAGCGAAGCGGCACTGGGCGGGGGTGCCTGGGGCGGCGGAGTCGAGGGCGGAGTCGTCGGAGTCGATGTGGGAGGGCGTGGGAGATGTCGATGTGGACGAGGAAGAGGAGGGAGAGCAGGAGGACGAAGGTGGCGGCGATGCGGGCGAAGAGCGGCCGGTGGGCGCGCAGGATGGACGCCGCCTCCCTGTAGATCCCCACCACGCCCAGGAACTGCAGCTCCTCCGGCTCGCACTCCATTGGACTCCTTCGATTGAGGATTGGATTTGACTTGGATTCCTCGTCCGCTACGTTGTCGGTAGCTTATTAATTTGGTAGGTAGCTAACGAAACGAGATGAGATGAGCTTGAGATGGGATTGGGGATTGGGGAATTTTGGAGAAGTAGTCGTAAGTAAGCAATTGGTTGGGGAAGCGAGGTCTCGGACATGGCGGCGTCGGTCGAGTGCGCGGTCTGCCTCAGCGTCGTCGACGAGGGGGAGAAGGTGAGGCAGCTCCCGGCGTGCGGGCATGTTTTCCACCAGGAGTGCATCAACATGTGGCTCTCGTCCCACGCCTCATGCCCGGTCTGCCACGGGAAGGCCGCGCCAGCCGACGAGCTTGCCGACGCCATAGCCGTGTGCATATCGGTGAAGCGCGACGTCGTCGTGCCAGCCTCCTCGCCGCCGCCGAGCTCGCCCGCCGGCTCTCCGCCCGCAGCTCGCATCCGTGCATGCCCATCGTCTCTCCGCCCGCCGCTGGCCTGAAGAAGAGAAGCGAGAAGAGAGAAGAGAGGAGAAGAAAAGAGAAAAGAAATATATGTGCAGCTGACATGTGGGCCCATGTACTTTTTTAAAAAAATTTTGCTGACTAAGATGCCACGTCAGCGAAACCACCCATATATACTGCTTTGGGACCTTTTTATGCACGGATTGTGTGAGTTTAGGGGTATACATTTCTGGTTTTGTAGTTAAGAGACCTCAAAAAATCTCGTTGTTAAGTTGAGGGACCTCCGGTGAACTTATTCCTGACAAAAAATGAGGCCCTATTAACTCCTAGCTGCAGGCCACTAGCTTTCTTTTTACCTCCTAGCCTGTGCCAATTAATTAACCAGCTGATCACTTCCTCTTCCTAATTACTTTCTCTATCCACAAAAGTTATACCTATTACTTTTGTCACCAAGATCATGAAGAAATTAAATCATCTTAGATGTTACAAAATCAAGAAGTGAATGTAAGCATGCAACCAATGAGTATTTAGAACAGGTACAATAGCAGGCTATAAGCTAGCTATAAATATATTTTAAAGAGATAAAAGAAAAGAGAGAAGAGCAGCGGTCTACAGATCTATAGCCAGCTACAGCACGGATTCTAAGATGTAATATGTGTATGACATGTGGGACCAGGTATTAATAATGCAGTAAGCAACTATTGTATGAATTAGCTATTACATTGGCTATAGATGATTTGGAGCTAGTAGTTGGCTATACTATTAAACTTACTCTTAGATGACTCCTTTGGGTTCTAATCAAATATTTAATTTATCTCTTCATTTATAAATTTTAAATGCATTAAAAAATATAAATAGAAACAACTTATTTGGAAAAAGTTAAATGTGAAATATATTGTATCTAACTTTTGTGGATGGAGGGAGACAGGGAGTATATGAGTACACCATTTTAATTTACATACAAGGCGTATCGTTTTAAGATGCAAATTTATTCGAGTGGCGCTGGTTTGCTACTCCACCTAGTACAAATATAATGTACGGATGGCAGCCAAAGTTGACTAGTACTCCAAACTGCTCCAGCTCATAGAAAATGTCAACTATAATTAACTTGGAATTGGATTTATCTAGCCGATAGATGATCCCGGTTCAACGCCGTAGCACGTTCGTACGTACGGTATGAATGATGATGGATCAACACATGAAAAGTCAATATACTTGCATGATGTCAGCATCTAGCTCAACAAGAAAGCAACATATATATATATATATATATGCCATGTACTCTTACCCTTTCTCTTTCAACAAACTGCATGTACGTCTTCTTGCATAAATCAGCCAACTAATTAAGTTCTGGAGTATACATACATACATACATACATACATACATACATACATACATACATACATACATACATATATACATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACTACTTAAGACGTTTCCGTCGTCCATCTAAAAAAAATAGCGAAATAAAACGTAAAAAAAAAGAGAGATAGTCCGATTCAATCAATGACGCGGAGAACAAAAAAAAAAATCCGTTCGTCCCTCACCCACATCACGCACACCCCTCTCCAAATCCCAAACCATCACAATCCAAACCAAAAACAAAATCCCAATCCAAATCGGAATCATCACAAAATCTAATATAAATATTTGGATTTTTCCGGTCGTCACACCGGTTTTTCGTCCCGCTTCATCGCCCCCCTCCCCCAAAATCCCAATCCGAATCCAATCAAAACCCAGAAAAAAATCACAATCACAATCGGAGTTCAATCGCACAAATCATGATGCATGTACACACATATATCCAAATAAAAACAAAAAATTAGATCGAAGGGGGTCGCCGCCGCCGCCGCTGTCGCCGTCGCCGTCGTTGCCGAACCGCCGCCGTCGCCGTCGCTGTGGATCCGGTGGAGGGGAGAGCGCCGCCGCCGCCACCTCTCCTCCCGCTAGATCCGCCGGCGGCGGCAGCGGAGGGCACTCTCCGGTGGTGGGGGAGAGCGCCACCGCCACCGTCGGTGGTGGGGGAGGACTCCACCGCCGCCGCCGCTCGCGGGAGGAGGGGCGCCGTCGCCGCCGCTCGCGGGGCGCCTCCCCACCCGCTAGATCCGCCGCCGGTGGTGGGGGAGGGTGCTGCCGCCGCCGCTCGCGAGAGGAGGGGCGCCGTCGCCGTCGCCGCCGCTCGCGGGGCGCCTCCCCTCCCGCTAGATCCGCCGCCGGTGGTGGGGGAGGATGCCGCCGACGCCGCCTTGGGTGGTGGGGGTGCCGCCGCCGCCGCCATCGGTGGTGGGGGAGGGGCGCCGTCGTCGCCGCCGCCGCTCGAGGGCGCGGAGGAGAGGGCGGCGAAGTGAGATGGGAGGGAGGGAAATGGGCTAGGGTTCCGCGGCTGAGAGGGAGTGGGTTTTGTTTCCCCACTATCGACGCTCGGCCGTCCGATCAAAACCCTAGAGATCGGATGGCCGGTGTCGTCCGGGCCGAAATCGGCCCAAGAGGGATCGAGAGTGAGGCCTCTTTTCCGGCCCAAGCCCAGGTTGCGGCCTGGGGGAGGAAAAGTGCGCCCGCGCATACGCAAGAGGCCGTGGGCCGACCGGCATGGGTCGGAAATAAGTCTATTTTTGGTCCCTCGAGCCGAAAAAAAGAGAATAAGTACATTTTTAGTGCTCATTTTTTCAGAAGCATTACAATTATAGTTATATTGAATATGTTTATTTCGAAGCAAACCTATAAGAAAGTATTTTCTTTCTTTTTCCAATTAAATAATTGTTAA
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| CDS seq | ATGGGTGGTTTCACTGACGTAACATGTCAGAAAAAAAAATTAAAAAAAGTACATAGGCGCACATGCCAGCTGCACATATTTTTTCTTCTCTTTTCTTCTCCTCTCCTCTTTTCTCTCTTCTCTCCTCTTCTTCAGGCCAGCGGCGGGCGGAGAGCCGGAGAGACGATGGGCACGCGCGGATGCGAGCAGCGGGCGGAGCGGACGGCGGGCGAGCGCGGCGGCAGAGCAGCGAAGCGGCACTGGGCGGGGGTGCCTGGGGCGGCGGAGTCGAGGGCGGAGTCGTCGGACGAGGTCTCGGACATGGCGGCGTCGGTCGAGTGCGCGGTCTGCCTCAGCGTCGTCGACGAGGGGGAGAAGGTGAGGCAGCTCCCGGCGTGCGGGCATGTTTTCCACCAGGAGTGCATCAACATGTGGCTCTCGTCCCACGCCTCATGCCCGGTCTGCCACGGGAAGGCCGCGCCAGCCGACGAGCTTGCCGACGCCATAGCCGTGTGCATATCGGTGAAGCGCGACGTCGTCGTGCCAGCCTCCTCGCCGCCGCCGAGCTCGCCCGCCGGCTCTCCGCCCGCAGCTCGCATCCGTGCATGCCCATCGGGGTCGCCGCCGCCGCCGCTGTCGCCGTCGCCGTCGTTGCCGAACCGCCGCCGTCGCCGTCGCTGTGGATCCGGTGGAGGGGAGAGCGCCGCCGCCGCCACCTCTCCTCCCGCTAGATCCGCCGGCGGCGGCAGCGGAGGGCACTCTCCGGTGGTGGGGGAGAGCGCCACCGCCACCGTCGGTGGTGGGGGAGGACTCCACCGCCGCCGCCGCTCGCGGGAGGAGGGGCGCCGTCGCCGCCGCTCGCGGGGCGCCTCCCCACCCGCTAGATCCGCCGCCGGTGGTGGGGGAGGGTGCTGCCGCCGCCGCTCGCGAGAGGAGGGGCGCCGTCGCCGTCGCCGCCGCTCGCGGGGCGCCTCCCCTCCCGCTAGATCCGCCGCCGGTGGTGGGGGAGGATGCCGCCGACGCCGCCTTGGGTGGTGGGGGTGCCGCCGCCGCCGCCATCGGTGGTGGGGGAGGGGCGCCGTCGTCGCCGCCGCCGCTCGAGGGCGCGGAGGAGAGGGCGGCGAAGTGAGATGGGAGGGAGGGAAATGGGCTAGGGTTCCGCGGCTGAGAGGGAGTGGGTTTTGTTTCCCCACTATCGACGCTCGGCCGTCCGATCAAAACCCTAGAGATCGGATGGCCGGTGTCGTCCGGGCCGAAATCGGCCCAAGAGGGATCGAGAGTGAGGCCTCTTTTCCGGCCCAAGCCCAGGTTGCGGCCTGGGGGAGGAAAAGTGCGCCCGCGCATACGCAAGAGGCCGTGGGCCGACCGGCATGGGTCGGAAATAAGTCTATTTTTGGTCCCTCGAGCCGAAAAAAAGAGAATAAGTACATTTTTAGTGCTCATTTTTTCAGAAGCATTACAATTATAGTTATATTGAATATGTTTATTTCGAAGCAAACCTATAAGAAAGTATTTTCTTTCTTTTTCCAATTAAATAATTGTTAA
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| Protein seq | MGGFTDVTCQKKKLKKVHRRTCQLHIFFLLFSSPLLFSLFSPLLQASGGRRAGETMGTRGCEQRAERTAGERGGRAAKRHWAGVPGAAESRAESSDEVSDMAASVECAVCLSVVDEGEKVRQLPACGHVFHQECINMWLSSHASCPVCHGKAAPADELADAIAVCISVKRDVVVPASSPPPSSPAGSPPAARIRACPSGSPPPPLSPSPSLPNRRRRRRCGSGGGESAAAATSPPARSAGGGSGGHSPVVGESATATVGGGGGLHRRRRSREEGRRRRRSRGASPPARSAAGGGGGCCRRRSREEGRRRRRRRSRGASPPARSAAGGGGGCRRRRLGWWGCRRRRHRWWGRGAVVAAAARGRGGEGGEVRWEGGKWARVPRLRGSGFCFPTIDARPSDQNPRDRMAGVVRAEIGPRGIESEASFPAQAQVAAWGRKSAPAHTQEAVGRPAWVGNKSIFGPSSRKKENKYIFSAHFFRSITIIVILNMFISKQTYKKVFSFFFQLNNC |
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| Function | RING-H2 finger protein ATL32 [UniProtKB/Swiss-Prot:Q8W571] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0108350 | Os12t0108350-00 | Chr12 | 456609 | 460374 | + | irgsp1_rep | ||
| CDS seq | ATGGGTGGTTTCACTGACGTAACATGTCAGAAAAAAAAATTAAAAAAAGTACATAGGCGCACATGCCAGCTGCACATATTTTTTCTTCTCTTTTCTTCTCCTCTCCTCTTTTCTCTCTTCTCTCCTCTTCTTCAGGCCAGCGGCGGGCGGAGAGCCGGAGAGACGATGGGCACGCGCGGATGCGAGCAGCGGGCGGAGCGGACGGCGGGCGAGCGCGGCGGCAGAGCAGCGAAGCGGCACTGGGCGGGGGTGCCTGGGGCGGCGGAGTCGAGGGCGGAGTCGTCGGACGAGGTCTCGGACATGGCGGCGTCGGTCGAGTGCGCGGTCTGCCTCAGCGTCGTCGACGAGGGGGAGAAGGTGAGGCAGCTCCCGGCGTGCGGGCATGTTTTCCACCAGGAGTGCATCAACATGTGGCTCTCGTCCCACGCCTCATGCCCGGTCTGCCACGGGAAGGCCGCGCCAGCCGACGAGCTTGCCGACGCCATAGCCGTGTGCATATCGGTGAAGCGCGACGTCGTCGTGCCAGCCTCCTCGCCGCCGCCGAGCTCGCCCGCCGGCTCTCCGCCCGCAGCTCGCATCCGTGCATGCCCATCGGGGTCGCCGCCGCCGCCGCTGTCGCCGTCGCCGTCGTTGCCGAACCGCCGCCGTCGCCGTCGCTGTGGATCCGGTGGAGGGGAGAGCGCCGCCGCCGCCACCTCTCCTCCCGCTAGATCCGCCGGCGGCGGCAGCGGAGGGCACTCTCCGGTGGTGGGGGAGAGCGCCACCGCCACCGTCGGTGGTGGGGGAGGACTCCACCGCCGCCGCCGCTCGCGGGAGGAGGGGCGCCGTCGCCGCCGCTCGCGGGGCGCCTCCCCACCCGCTAGATCCGCCGCCGGTGGTGGGGGAGGGTGCTGCCGCCGCCGCTCGCGAGAGGAGGGGCGCCGTCGCCGTCGCCGCCGCTCGCGGGGCGCCTCCCCTCCCGCTAGATCCGCCGCCGGTGGTGGGGGAGGATGCCGCCGACGCCGCCTTGGGTGGTGGGGGTGCCGCCGCCGCCGCCATCGGTGGTGGGGGAGGGGCGCCGTCGTCGCCGCCGCCGCTCGAGGGCGCGGAGGAGAGGGCGGCGAAGTGAGATGGGAGGGAGGGAAATGGGCTAGGGTTCCGCGGCTGAGAGGGAGTGGGTTTTGTTTCCCCACTATCGACGCTCGGCCGTCCGATCAAAACCCTAGAGATCGGATGGCCGGTGTCGTCCGGGCCGAAATCGGCCCAAGAGGGATCGAGAGTGAGGCCTCTTTTCCGGCCCAAGCCCAGGTTGCGGCCTGGGGGAGGAAAAGTGCGCCCGCGCATACGCAAGAGGCCGTGGGCCGACCGGCATGGGTCGGAAATAAGTCTATTTTTGGTCCCTCGAGCCGAAAAAAAGAGAATAAGTACATTTTTAGTGCTCATTTTTTCAGAAGCATTACAATTATAGTTATATTGAATATGTTTATTTCGAAGCAAACCTATAAGAAAGTATTTTCTTTCTTTTTCCAATTAAATAATTGTTAA
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| Protein seq | MGGFTDVTCQKKKLKKVHRRTCQLHIFFLLFSSPLLFSLFSPLLQASGGRRAGETMGTRGCEQRAERTAGERGGRAAKRHWAGVPGAAESRAESSDEVSDMAASVECAVCLSVVDEGEKVRQLPACGHVFHQECINMWLSSHASCPVCHGKAAPADELADAIAVCISVKRDVVVPASSPPPSSPAGSPPAARIRACPSGSPPPPLSPSPSLPNRRRRRRCGSGGGESAAAATSPPARSAGGGSGGHSPVVGESATATVGGGGGLHRRRRSREEGRRRRRSRGASPPARSAAGGGGGCCRRRSREEGRRRRRRRSRGASPPARSAAGGGGGCRRRRLGWWGCRRRRHRWWGRGAVVAAAARGRGGEGGEVRWEGGKWARVPRLRGSGFCFPTIDARPSDQNPRDRMAGVVRAEIGPRGIESEASFPAQAQVAAWGRKSAPAHTQEAVGRPAWVGNKSIFGPSSRKKENKYIFSAHFFRSITIIVILNMFISKQTYKKVFSFFFQLNNC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0108350 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01750 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0113900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000870 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003170 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001050 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000890 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0003060 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0007000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003130 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0007200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0011120 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0003140 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000990 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0011310 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001020 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001000 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000980 | SBH | 0.0 | 0.0 | 0.0 |
