Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g02424 | OGI:11002790 | 11/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:722930-726974 | ||||||||
| Gene Symbol | OsLTP1.13, OsLtpI.13 | ||||||||||
| DNA seq | GTTGCCCAGCATCTTCCTATTTATACCCTCCACCCATCGACCGACGATCCATCACCGGCGACGAGGAGACACTCACTGATATAATCAAGCTAGCTAGCTTAATCACCTAGCTATCCGTCAGTTTAGCTAGATATGGCTGCAGTTAACTGCAAGGTGGTGGTCGCCGTGATTGTGGTGGCGATGGTGGTTGCGGCGCCGGGGGCGTCGGCGGCGATAACGTGCGGGCAGGTGGGATCGGCGATCGCGCCGTGCATCTCGTACGTGACGGGGAGGAGCGGCCTCACGCAGGGATGCTGCAACGGAGTGAAGGGGCTGAACAACGCCGCCCGCACCACCGCCGACCGCCAGGCGGCCTGCCGCTGCCTCAAGAGCCTCGCCGGCAGCATCAAGTCGCTCAACCTCGGCACCGTCGCCGGCGTCCCCGGCAAGTGCGGCGTCAACGTCGGCTTCCCCATCAGCCTCTCCACCGACTGCAACAAGTATATCATCTCTCTATGACTCCTCTCTCTCTCTCTATATATATATATACACGCATATATCTCTTTATTTTTTACGTGCTATCTAAATACTCCCTCCGTTTCAGGTTATAAGACGTTTTAACTTTGGTTAAAGTTAAACTTCTCTAAGTTTAACTAATTCTGTAGAAAAAAGTAATAATATTTAAATACCATCATAGTTTCATTAAATCCATAATTGAATAAATTTTCATAATATATTTGTCATGGGTTAAAAAAGATACTACTTTTTTACTACAAAATCAGTAAAACTTACAGTATTTTAACTTTAACCAAAGTCAAAACGTCTTATAATCTAAAATGGAGCAATAGTTAATAAAAACTTTTACAAGTTAAGATAGATTACCATATGTGAGATATATCTCACTTCATAGACATAAAAGATTAAATTCAACTTATACAAGTTAAATTAAAAAACAAACTAAACTAACACTAGTTAACGTATTTTCGCTATTATATCTGTTATTATTGTTACAACTTGTACAAGTTTAATTTAAACATGTATATTTATGGACATGCATATTTAATATTAATCTATCTTATCATTTTGTTTTACTTTTTAATGGCTATTAAGGTGGGGGGATGAAAGCAACAATGAGATATTTCTCGAGATATGAAACATTTTCCCATAAAATAACTACCTATATATATGCATTTTTTTTCTTTGGTGCAGGGTCAGCTAGATCAATTAATCCTGCTTGGATCGATCGATCGAGCTTAACACGCTAGCTCGATCGGAGTTGATCAGCTAGTAATTAAGCACGTATTTGCTACAGCATATATGAACAAAGTAATTAAAATAACACCTGCGGCAGACATGCAGCGCTCCATTCTCTCTCTGTATCAGCTGTATACTTTATGTTGCACGCTCCCTGTGTGCATGTTCTATCTTAATTTTCTTCAGTATGTACACGATCTGTGTGTACTACGTGTAATCCTATACGTTTTATGAATTGCATGTTGTCCAAATGTCTTTGTCCTAGCTACTAGCTACTCCAGCTTCTTGCTGAGGAAATCTGCAGTAGTAGTAATCCCTCGTTGTGATACGCAACAAAATTGTTTAATGTGATCCTGCTATATATATAGAAAATCATCTCTATTATTTTACAGGCATAAAACAAGTCCACTCTAAAAACAATTAGTGCGGCCGTTGTCTTAATAGACCCGTATGTGAAAATCGTTTTTCACAAGCAGTTCCTTAAGACAACTTCATGTATCATTATTGTAGTATGTCAAAAAGATGCACCACACTATGCACAGTCATACAAAATGGCACTACTACACAACTGATCTTTTATCGGGATATCCATTTCGGATAGATTTAGAACGGGTATTAGAGATATTTTTAAGCACCGGTTACCAAAAACATCTTTAATTCCGATTGGTGTTATAACCGGTACTAAAGATGCCTACAGGGCTAGTTTAAAAAGAAAACATCCATATCCATGTCTGATGGGTGGAGTTGGTGGATGGTTACACGCGTGAGGGCTGAGGTGAGAGATCTTGAGTTCGAATCACATATCCCACACATTTTTTTTATTTCGTATGCATCTTTAGTACCGGTTATTTCAACTGGTACTAAAGATCGAGATATTTAGTCTCGATTTGTTAGAACCGGTTCTACATCTAAAACGGTTCCCAACTGGTGCTAAAAATGGGTTCTCCACTAGTGTGGCAATACATTTACATTCACACATTAAGGATTCACATCGTCACCCATATTCACGTTGACACTGTCTTTTAATGTATAATTTAAATGTTCACATTGTGAATATTCGACAATGATAGGGAGCCCGATCCCTATCTACAAGTCTAAACCTAAGATTAATTTGATCGACATGAGCTAATGAATAGATAAGCGCACTATCTATTGCTTGAAATGGTAGATCCATTAATTTCCTTTTCATATATAGATTATTGTAAAAAGTTGTCGTTGGCTGATTGGAAATAGACTTGGGCATGAAACCTATACCCTCTGCAACTCCACGTAATCGAAAATCATCCTGGAATAGACCCAAGGATGAAATTTAGACCAAGGAACGAAATTGGGCATCTATAAGTGTGGGGAGACAAAAATAAACGGTTTCATAGAGTTAAATGATCAAAGTTGGAACAATATTGCAATAGTTGATGATTAAATTAATTAATGTGGACTTCTTTAAACCATATATAGACTGTGTTCGGCAGCGCTGTTCCTAACACTACCAGTACGCACGAAAAATGAAACGGTCCATTAGCGCGTGATTAATTAAGTATTAGCTATTTTTTTTAAAAAAAATGAATTAATTTGATTTTTTTTCAAACAACTTTCGTATAGAAACTTTTTAAAAAAACACACCGTTTAGCAGTTTCAAAAGCGTGCGCACGAAAAACAAGGGAGGAGGGTTGAGAAAAAGGGTGCCGAAGTATTGTGCGCTAGATACTGGTAGGGGCATTGTTGTCCATCCTCGGAAGTGGCTCAAATATAACGTGCCACGACATTAGCGCCATTTCTTACACGAAAACGAAACAGGGAAAACTAATTGAACAAATAGAGAGATATGTAGCTAGCTAGCTTTCAGAGTCCACTTTTTGAGAGAGCTCAATCCAATGTGTGGTTTGGCTGCAGCGACGAACCAGAATAATCTCACTCTGCTGGTGCACCCAATCACCAAATCCAAAGGAAATTCAATGTACAACAAAATTAAAAAGAACATCTTATAATTTGTCTCCTCCTCCTGCATATGCTTGACTCCTAGCTTAACTAGAGGTACCTGCAGCCAGCCATGCGGCGGCTGGGTGACGTCGTGGAGGCGCCTGCGCTGGTGCTGACGCCGGCCTCCATGCAGCAGGCCGGCGGGAGGGGGAGCTCCGGCGCCTTGGACGCCAGCATGGTCGTCATCCTCGCCGCGCTGCTCTGCGTCGTCATCTGCGCCCTCGGCCTCACCTCCCTCATCCGCTGCGCGCTCCACTGCGCCCGCGGCCTCTCCCCCACCACGGCGACGCCGACGCCGTCGGTGTCGACAGCTGCCACGGCCGGGCTGAAGAAGACGGAGCTGAGGAGGATTCCGGTGGAGGTGTACGGCGCCAAGCAGGCCGGCGTCCCCGACGGCGAGTGCGCCATCTGCCTGGGCGACTTCGCCGACGGCGACAAGGTGCGCGTGCTCCCGAGGTGCCACCACGGCTTCCACGTCCGCTGCATCGACACGTGGCTCGCCGCGCACACGTCCTGCCCTACTTGCCGGGACTCCATTCTCTCCGTCCATGGAGTCGTCGCCGGCGGCCAAACATAGCTAGTAATATAATTTCTTGAACAGAAGAGGTCTAAAATGTAAATAGAATATAGGTGGTAAAGTACTCCAAAATTGGGATTGCGTAAATGCAAGGGATTGGACACAATGTTTGAAGTGTCTCTGTCACTTGGATTATCCATCTGTTTAGCTGTTTCTATGAGTTTTCTCCTTTAATTTGTGTGCTAGCACATGATATTTCCCCCAAGATTCGCTGTTCGTTTGTTCTGGGCATAATTTTGTCACCACTCAACAACAAAA
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| CDS seq | ATGCTGCAACGGAGTGAAGGGGCTGAACAACGCCGCCCGCACCACCGCCGACCGCCAGGCGGCCTGCCGCTGCCTCAAGAGCCTCGCCGGCAGCATCAAGTCGCTCAACCTCGGCACCGTCGCCGGCGTCCCCGGCAAGTGCGGCGTCAACGTCGGCTTCCCCATCAGCCTCTCCACCGACTGCAACAACCAGCCATGCGGCGGCTGGGTGACGTCGTGGAGGCGCCTGCGCTGGTGCTGACGCCGGCCTCCATGCAGCAGGCCGGCGGGAGGGGGAGCTCCGGCGCCTTGGACGCCAGCATGGTCGTCATCCTCGCCGCGCTGCTCTGCGTCGTCATCTGCGCCCTCGGCCTCACCTCCCTCATCCGCTGCGCGCTCCACTGCGCCCGCGGCCTCTCCCCCACCACGGCGACGCCGACGCCGTCGGTGTCGACAGCTGCCACGGCCGGGCTGAAGAAGACGGAGCTGAGGAGGATTCCGGTGGAGGTGTACGGCGCCAAGCAGGCCGGCGTCCCCGACGGCGAGTGCGCCATCTGCCTGGGCGACTTCGCCGACGGCGACAAGGTGCGCGTGCTCCCGAGGTGCCACCACGGCTTCCACGTCCGCTGCATCGACACGTGGCTCGCCGCGCACACGTCCTGCCCTACTTGCCGGGACTCCATTCTCTCCGTCCATGGAGTCGTCGCCGGCGGCCAAACATAG
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| Protein seq | MLQRSEGAEQRRPHHRRPPGGLPLPQEPRRQHQVAQPRHRRRRPRQVRRQRRLPHQPLHRLQQPAMRRLGDVVEAPALVLTPASMQQAGGRGSSGALDASMVVILAALLCVVICALGLTSLIRCALHCARGLSPTTATPTPSVSTAATAGLKKTELRRIPVEVYGAKQAGVPDGECAICLGDFADGDKVRVLPRCHHGFHVRCIDTWLAAHTSCPTCRDSILSVHGVVAGGQT |
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| Function | RING-H2 finger protein ATL72 [UniProtKB/Swiss-Prot:Q9SG96] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g02424 | LOC_Os11g02424.1 | Chr11 | 722930 | 726974 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTGCAACGGAGTGAAGGGGCTGAACAACGCCGCCCGCACCACCGCCGACCGCCAGGCGGCCTGCCGCTGCCTCAAGAGCCTCGCCGGCAGCATCAAGTCGCTCAACCTCGGCACCGTCGCCGGCGTCCCCGGCAAGTGCGGCGTCAACGTCGGCTTCCCCATCAGCCTCTCCACCGACTGCAACAACCAGCCATGCGGCGGCTGGGTGACGTCGTGGAGGCGCCTGCGCTGGTGCTGACGCCGGCCTCCATGCAGCAGGCCGGCGGGAGGGGGAGCTCCGGCGCCTTGGACGCCAGCATGGTCGTCATCCTCGCCGCGCTGCTCTGCGTCGTCATCTGCGCCCTCGGCCTCACCTCCCTCATCCGCTGCGCGCTCCACTGCGCCCGCGGCCTCTCCCCCACCACGGCGACGCCGACGCCGTCGGTGTCGACAGCTGCCACGGCCGGGCTGAAGAAGACGGAGCTGAGGAGGATTCCGGTGGAGGTGTACGGCGCCAAGCAGGCCGGCGTCCCCGACGGCGAGTGCGCCATCTGCCTGGGCGACTTCGCCGACGGCGACAAGGTGCGCGTGCTCCCGAGGTGCCACCACGGCTTCCACGTCCGCTGCATCGACACGTGGCTCGCCGCGCACACGTCCTGCCCTACTTGCCGGGACTCCATTCTCTCCGTCCATGGAGTCGTCGCCGGCGGCCAAACATAG
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| Protein seq | MLQRSEGAEQRRPHHRRPPGGLPLPQEPRRQHQVAQPRHRRRRPRQVRRQRRLPHQPLHRLQQPAMRRLGDVVEAPALVLTPASMQQAGGRGSSGALDASMVVILAALLCVVICALGLTSLIRCALHCARGLSPTTATPTPSVSTAATAGLKKTELRRIPVEVYGAKQAGVPDGECAICLGDFADGDKVRVLPRCHHGFHVRCIDTWLAAHTSCPTCRDSILSVHGVVAGGQT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g02424 | LOC_Os11g02424.2 | Chr11 | 722930 | 724565 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTGCAGTTAACTGCAAGGTGGTGGTCGCCGTGATTGTGGTGGCGATGGTGGTTGCGGCGCCGGGGGCGTCGGCGGCGATAACGTGCGGGCAGGTGGGATCGGCGATCGCGCCGTGCATCTCGTACGTGACGGGGAGGAGCGGCCTCACGCAGGGATGCTGCAACGGAGTGAAGGGGCTGAACAACGCCGCCCGCACCACCGCCGACCGCCAGGCGGCCTGCCGCTGCCTCAAGAGCCTCGCCGGCAGCATCAAGTCGCTCAACCTCGGCACCGTCGCCGGCGTCCCCGGCAAGTGCGGCGTCAACGTCGGCTTCCCCATCAGCCTCTCCACCGACTGCAACAAGGTCAGCTAG
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| Protein seq | MAAVNCKVVVAVIVVAMVVAAPGASAAITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTDCNKVS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.946958 | 7.405935 | 16.940969 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0116200 | RBH | 14.356194 | 14.206342 | 79.737244 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02350 | RBH | 0.948078 | 0.895285 | 0.512447 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0116200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000960 | SBH | 5.517438 | 0.0 | 34.921013 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0001160 | RBH | 3.432532 | 0.0 | 42.035145 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001140 | RBH | 7.679023 | 0.000000 | 58.632210 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001130 | RBH | 0.689854 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001150 | RBH | 55.302402 | 0.0 | 156.949142 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0014600 | RBH | 3.4002685 | 0.0090795 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003130 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0016300 | RBH | 2.3695455 | 0 | 0.018098 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000980 | SBH | 7.257802 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001130 | RBH | 44.296913 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001150 | RBH | 43.432896 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001130 | SBH | 13.811701 | 0.0 | 12.057741 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001180 | RBH | 0.808108 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002110 | SBH | 8.034003 | 0.0 | 43.260994 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001120 | RBH | 75.693802 | 0.0 | 185.052811 |
