Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g06836 | OGI:01011260 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:3241127-3243315 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGCGGGGTGGCGACCGGCACGGGGGCAGTGGCCAGGGGCCTCGCCGGGGGAGCGGACGACGACGATGCAGGCGTAGCCCGGCTAGCCAGCTCCGAGACGAGGCGCTCAACGAATGGTGCTACGACAGTCTCCTCATCGAGCCCCCGTGGCTTGGTGCTGCGAATCACCTTGCGCAGGCACGATGGGCTCGTCGGCCTCACTGCCCACGCCGCCACCGCCAGCGCGGCCATGTCACCCATCGCCGCGAGATCGACGAGATGATGGCAATGACACCTCTTGCCGCATCTATGGTGGTGGAGAGAGAGGAAGGGGAAAGAGAAGAGAGGGGAGGGAGGTGGGGCCCATGTGCAGTTGCGGGGTAACGGGGATTTTTGTCGGAAAATATGATGGAGTGGCATGGTTCCAATTTCTCCAATTTTCAGTGGTACATAGCCAATATGCTGAATAGTAGTGGCATTTTTTCGAATTGGCATATTTCCAGTGGCATGGATCTAATTAACCCTTTATTTTAAGATGTTTTAGTGGATATAGCTAGCATTGCGCTATATAAAATACAATTGTATCTATAAAAAATGGTTGAGTGTATAAATATTTTAAAATAAATTTTAATCTAGCCCGCGCAATATTACATGGAAAATCTGCCTTAGTTCGGTTAACTCAAAAGAATGAACTGTCTTGGTTAAAGTGTTCCCTAACTTATAGTTTTGATGAATTTTGATGAATGTTTGCCCATGCATGCAGGAAAAATTCCACAATTGTTGTTCACTCTTTCGGGGCTGAAATATGTTGAAGTTATTGGAAACCAGCTATCTGGTTCTCTAGAAGACATCCCTTCTCCTTTAACTTCATCTTTGTCATCAATTGACTTAAGCGACAATCAACTATCGGGCCCGATACCCAAATCATTTTTCCAGCTTACAAATCTTAATTATCTCAATCTTGGATCGAATAAATTCATAGGCTCGGTTGAACTTAGCTCTGTCTGGAAGCTGAAGAATCTTGATTTCTTAAGCCTGTCAAACAATTTGATATCACTCATAGATGATGAAGGTGAAACAGTGTCCCCTTCTCTTCCAAACATTAGATACTTACACCTGGCATCTTGCAAACTTACAAAAATTCCAGGCACACTAAGATATCTTGATGCGATTTCGGACCTTGACCTTTCAAGTAACCAAATTACCGGGGCAATACCAAGGTGGATATGGGAGAATCGAACGTACCAGCTCAATAGTCTGAATCTCTCGCACAACATGTTTACTACTGTGGAGCAGTCTCCTTCTCTTGTTAATATCGCATATTTAACTTATCTTGACCTCAGTTTCAATAGACTTCAAGGAATCATACCAATACCAGTAACCACATCCAGTGAGATCGCATTGGACTACTCAAACAACCACTTCTCTTCAATAGTACCGAACTTTGGCATATATCTTGAAAACGCCAGCTATATTAATTTCTCCAATAATAAACTAAGTGGCAATGTACCATCTTCGATTTGTAATGCAAGCAAAGCCATTATCACGGACTTATCTGGCAACAACTACAGTGGATCAGTACCAGCATGTCTTACAGGAAGTGTAAACTTAAGCGTATTGAAATTGAGAGACAACCAATTCCATGGGGTGTTACCTAACAATAGTAGAGAGGGGTGCAATCTTCAGTCAATAGATGTGAATGGAAACCAAATTGAAGGTAAACTACCTAGATCACTATCATACTGCCAAGATTTGGAGCTCCTGGATGCTGGAAATAATCAGATTGTTGATTCTTTTCCATTTTGGTTGGGTAAACTTCCAAATCTCCGAGTCCTTGTCTTAAGATCCAACAAAATAAATGGTACAATAAGGGGTCTTAAAAGTGGTTACCAAAATAGTGATTATTTCACAAGGTTGCAAATAATTGATTTGGCCTCCAATCATTTATCTGGCAACATACATTCAGAATGGTTTGAACATTTGCAATCAATGATGAATGTAACTGATGACGACCAAATATTAGAGTATCGTACGAAAGCAAGTATAAAATCGCTCTATCAGGATAATACGGCTGTCACTTACAAAGGGAACACTCTTATGTTCACTAAAATCCTGACCACCTTCAAAGCAATTGATCTCTCAGACAACTCATTTGGTGGTCCTATTCCAAAGTCAATGGGGGAAGCTTGCTTCACTACATGGATTTAA
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| CDS seq | ATGGGCGGGGTGGCGACCGGCACGGGGGCAGTGGCCAGGGGCCTCGCCGGGGGAGCGGACGACGACGATGCAGGCGTAGCCCGGCTAGCCAGCTCCGAGACGAGGCGCTCAACGAATGGAAAAATTCCACAATTGTTGTTCACTCTTTCGGGGCTGAAATATGTTGAAGTTATTGGAAACCAGCTATCTGGTTCTCTAGAAGACATCCCTTCTCCTTTAACTTCATCTTTGTCATCAATTGACTTAAGCGACAATCAACTATCGGGCCCGATACCCAAATCATTTTTCCAGCTTACAAATCTTAATTATCTCAATCTTGGATCGAATAAATTCATAGGCTCGGTTGAACTTAGCTCTGTCTGGAAGCTGAAGAATCTTGATTTCTTAAGCCTGTCAAACAATTTGATATCACTCATAGATGATGAAGGTGAAACAGTGTCCCCTTCTCTTCCAAACATTAGATACTTACACCTGGCATCTTGCAAACTTACAAAAATTCCAGGCACACTAAGATATCTTGATGCGATTTCGGACCTTGACCTTTCAAGTAACCAAATTACCGGGGCAATACCAAGGTGGATATGGGAGAATCGAACGTACCAGCTCAATAGTCTGAATCTCTCGCACAACATGTTTACTACTGTGGAGCAGTCTCCTTCTCTTGTTAATATCGCATATTTAACTTATCTTGACCTCAGTTTCAATAGACTTCAAGGAATCATACCAATACCAGTAACCACATCCAGTGAGATCGCATTGGACTACTCAAACAACCACTTCTCTTCAATAGTACCGAACTTTGGCATATATCTTGAAAACGCCAGCTATATTAATTTCTCCAATAATAAACTAAGTGGCAATGTACCATCTTCGATTTGTAATGCAAGCAAAGCCATTATCACGGACTTATCTGGCAACAACTACAGTGGATCAGTACCAGCATGTCTTACAGGAAGTGTAAACTTAAGCGTATTGAAATTGAGAGACAACCAATTCCATGGGGTGTTACCTAACAATAGTAGAGAGGGGTGCAATCTTCAGTCAATAGATGTGAATGGAAACCAAATTGAAGGTAAACTACCTAGATCACTATCATACTGCCAAGATTTGGAGCTCCTGGATGCTGGAAATAATCAGATTGTTGATTCTTTTCCATTTTGGTTGGGTAAACTTCCAAATCTCCGAGTCCTTGTCTTAAGATCCAACAAAATAAATGGTACAATAAGGGGTCTTAAAAGTGGTTACCAAAATAGTGATTATTTCACAAGGTTGCAAATAATTGATTTGGCCTCCAATCATTTATCTGGCAACATACATTCAGAATGGTTTGAACATTTGCAATCAATGATGAATGTAACTGATGACGACCAAATATTAGAGTATCGTACGAAAGCAAGTATAAAATCGCTCTATCAGGATAATACGGCTGTCACTTACAAAGGGAACACTCTTATGTTCACTAAAATCCTGACCACCTTCAAAGCAATTGATCTCTCAGACAACTCATTTGGTGGTCCTATTCCAAAGTCAATGGGGGAAGCTTGCTTCACTACATGGATTTAA
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| Protein seq | MGGVATGTGAVARGLAGGADDDDAGVARLASSETRRSTNGKIPQLLFTLSGLKYVEVIGNQLSGSLEDIPSPLTSSLSSIDLSDNQLSGPIPKSFFQLTNLNYLNLGSNKFIGSVELSSVWKLKNLDFLSLSNNLISLIDDEGETVSPSLPNIRYLHLASCKLTKIPGTLRYLDAISDLDLSSNQITGAIPRWIWENRTYQLNSLNLSHNMFTTVEQSPSLVNIAYLTYLDLSFNRLQGIIPIPVTTSSEIALDYSNNHFSSIVPNFGIYLENASYINFSNNKLSGNVPSSICNASKAIITDLSGNNYSGSVPACLTGSVNLSVLKLRDNQFHGVLPNNSREGCNLQSIDVNGNQIEGKLPRSLSYCQDLELLDAGNNQIVDSFPFWLGKLPNLRVLVLRSNKINGTIRGLKSGYQNSDYFTRLQIIDLASNHLSGNIHSEWFEHLQSMMNVTDDDQILEYRTKASIKSLYQDNTAVTYKGNTLMFTKILTTFKAIDLSDNSFGGPIPKSMGEACFTTWI |
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| Function | Receptor-like protein 47 [UniProtKB/Swiss-Prot:Q9SVN2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g06836 | LOC_Os01g06836.1 | Chr01 | 3241127 | 3243315 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGCGGGGTGGCGACCGGCACGGGGGCAGTGGCCAGGGGCCTCGCCGGGGGAGCGGACGACGACGATGCAGGCGTAGCCCGGCTAGCCAGCTCCGAGACGAGGCGCTCAACGAATGGAAAAATTCCACAATTGTTGTTCACTCTTTCGGGGCTGAAATATGTTGAAGTTATTGGAAACCAGCTATCTGGTTCTCTAGAAGACATCCCTTCTCCTTTAACTTCATCTTTGTCATCAATTGACTTAAGCGACAATCAACTATCGGGCCCGATACCCAAATCATTTTTCCAGCTTACAAATCTTAATTATCTCAATCTTGGATCGAATAAATTCATAGGCTCGGTTGAACTTAGCTCTGTCTGGAAGCTGAAGAATCTTGATTTCTTAAGCCTGTCAAACAATTTGATATCACTCATAGATGATGAAGGTGAAACAGTGTCCCCTTCTCTTCCAAACATTAGATACTTACACCTGGCATCTTGCAAACTTACAAAAATTCCAGGCACACTAAGATATCTTGATGCGATTTCGGACCTTGACCTTTCAAGTAACCAAATTACCGGGGCAATACCAAGGTGGATATGGGAGAATCGAACGTACCAGCTCAATAGTCTGAATCTCTCGCACAACATGTTTACTACTGTGGAGCAGTCTCCTTCTCTTGTTAATATCGCATATTTAACTTATCTTGACCTCAGTTTCAATAGACTTCAAGGAATCATACCAATACCAGTAACCACATCCAGTGAGATCGCATTGGACTACTCAAACAACCACTTCTCTTCAATAGTACCGAACTTTGGCATATATCTTGAAAACGCCAGCTATATTAATTTCTCCAATAATAAACTAAGTGGCAATGTACCATCTTCGATTTGTAATGCAAGCAAAGCCATTATCACGGACTTATCTGGCAACAACTACAGTGGATCAGTACCAGCATGTCTTACAGGAAGTGTAAACTTAAGCGTATTGAAATTGAGAGACAACCAATTCCATGGGGTGTTACCTAACAATAGTAGAGAGGGGTGCAATCTTCAGTCAATAGATGTGAATGGAAACCAAATTGAAGGTAAACTACCTAGATCACTATCATACTGCCAAGATTTGGAGCTCCTGGATGCTGGAAATAATCAGATTGTTGATTCTTTTCCATTTTGGTTGGGTAAACTTCCAAATCTCCGAGTCCTTGTCTTAAGATCCAACAAAATAAATGGTACAATAAGGGGTCTTAAAAGTGGTTACCAAAATAGTGATTATTTCACAAGGTTGCAAATAATTGATTTGGCCTCCAATCATTTATCTGGCAACATACATTCAGAATGGTTTGAACATTTGCAATCAATGATGAATGTAACTGATGACGACCAAATATTAGAGTATCGTACGAAAGCAAGTATAAAATCGCTCTATCAGGATAATACGGCTGTCACTTACAAAGGGAACACTCTTATGTTCACTAAAATCCTGACCACCTTCAAAGCAATTGATCTCTCAGACAACTCATTTGGTGGTCCTATTCCAAAGTCAATGGGGGAAGCTTGCTTCACTACATGGATTTAA
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| Protein seq | MGGVATGTGAVARGLAGGADDDDAGVARLASSETRRSTNGKIPQLLFTLSGLKYVEVIGNQLSGSLEDIPSPLTSSLSSIDLSDNQLSGPIPKSFFQLTNLNYLNLGSNKFIGSVELSSVWKLKNLDFLSLSNNLISLIDDEGETVSPSLPNIRYLHLASCKLTKIPGTLRYLDAISDLDLSSNQITGAIPRWIWENRTYQLNSLNLSHNMFTTVEQSPSLVNIAYLTYLDLSFNRLQGIIPIPVTTSSEIALDYSNNHFSSIVPNFGIYLENASYINFSNNKLSGNVPSSICNASKAIITDLSGNNYSGSVPACLTGSVNLSVLKLRDNQFHGVLPNNSREGCNLQSIDVNGNQIEGKLPRSLSYCQDLELLDAGNNQIVDSFPFWLGKLPNLRVLVLRSNKINGTIRGLKSGYQNSDYFTRLQIIDLASNHLSGNIHSEWFEHLQSMMNVTDDDQILEYRTKASIKSLYQDNTAVTYKGNTLMFTKILTTFKAIDLSDNSFGGPIPKSMGEACFTTWI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.045943 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0162300 | SBH | 0.336843 | 0.176559 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g06900 | SBH | 0.594768 | 0.823849 | 0.519105 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0162300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0004520 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004220 | SBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004510 | SBH | 0.072213 | 0.764565 | 1.948779 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0004130 | SBH | 0.134132 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004320 | RBH | 0.471651 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0056800 | SBH | 0.10463 | 0.270119 | 0.10602 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004250 | SBH | 0.024807 | 0.015142 | 0.051441 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0058300 | RBH | 0.1414535 | 0.116168 | 0.609636 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0004090 | RBH | 0.013525 | 0.020171 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004260 | SBH | 0.060693 | 1.340681 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004320 | SBH | 0.680627 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004300 | SBH | 0.032240 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004240 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004320 | SBH | 0.094549 | 0.0 | 0.188561 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004210 | SBH | 0.726669 | 0.0 | 0.794022 |
