Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsJ4155_12g0103300 OGI:12026280 | 35/50 Os XI-adm: J4155S | J4155S | PKU Chr12:9274740-9280175
Gene Symbol -
Mutant -
Stuctural Variations

LJ_J4155S_INS1219240,R9311_J4155S_INS1207750,XL628S_J4155S_OTH1209020,XL628S_J4155S_INS1209030,R498_J4155S_INS1206510,LK638S_J4155S_OTH1208960,LK638S_J4155S_INS1208970,ZS97RS3_J4155S_OTH1210220,ZS97RS3_J4155S_INS1210230,YX1_J4155S_INS1207920,Azucena_J4155S_OTH1219150,Azucena_J4155S_INS1219160,II32_J4155S_INS1207410,OglaRS2_J4155S_INS1218670,127742_J4155S_INS1207450,NamRoo_J4155S_INS1216900,132278_J4155S_INS1218280,117534_J4155S_INS1218470,Tumba_J4155S_INS1210500,125619_J4155S_OTH1219770,125619_J4155S_INS1219780,127518_J4155S_OTH1206350,127518_J4155S_INS1206360,G46_J4155S_OTH1209910,G46_J4155S_INS1209920,DG_J4155S_OTH1210120,DG_J4155S_INS1210130,

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DNA seq

CCAACTCATTGAGAGTGAAGTAAAAGGCTTCCTTGTACCTCTGGAACCTTGCTACATCACCTCCAAAATCATAAATTCCAGGACAAAGTATGCGCAGCTGCCTTAATCTGGTTAGCCAACAGAGCTCTTGTAAACATTTTATGCTGTACCGAATGCTATTAAGATATAGCACCTCCAAAGCTTGCAAAACTCCAATTTCATCTGGCAATCTCATTGGGTAATTAAAATTTAGGCGCTGTAGTTTTTGCAGTCTACAAACACTTGACGGAATGTTTATTTCGTCGACATCTCCTGCATGAATAGTTAGTGTTTCTAGTTGCTGCAGCCGTCCAATATCCTTGGGCAGCTCGGTAACATTTACACCAAAAACCTTCAGATACTTCAACTGGAAAAGGTATGTTAGGCTGTTAATATGCTAGCTATCCAGGTTCCTACACCGATACAGATCCAATACCCGCAGAGCATGGCATTTCTTAAATTGTGGTATTTGTTTCGGTTTAGGATTCTCAAAGAAGAGCAGCGAACGAACTTGTGAACAGTTGTTCGTAATCTTCTTGACTATTCTATTATCTGTGCCATTGGATGGGAACCAGGTCCTCCGAATCTTCTTGAAAGAACTCCAATGCTGTTGTTCATCCACTATTGCGACGAAATTTTGTCCAGTCGATAGGCTTATGATAAGATCAAGCACAATATCATGAACTCGGCAATACTTGGCGCTGCCATCATACTGGATACTAACTGGTTGGATCAAGCTTCTATTTATAAGCTCATTAAAGTAGTTCTCTCCTACTTGCTCCTGTGTTTGATTCTTCACTTCAACGATGAATCCTTCAGCTATCCATCTCCATATAAGGTCTTGTCTATCAATTTAATAATCCTCTGGATACATTTTTTTTTAGATAATGGAATATAATCCCGGCCTTTACTCAAAAAGCTACAGCCAATCCTCTGGATACATGCTTAGATACAACGGATATTTTTTCGGGGGATAAGGAAGATCATAATAACTGAGCATTAATATTTTCCTCACTCGAGCCTCTGAGTTTAGTGAAGCACCAACAGTATCATGCACTTGCACCCACTGGTCCTCTGAATCGGATTTGGTTGCTAGCAAGCTAGCTATGGAGATTATAGCTAATGGTAAACCACGACATTTCGATATGATGGCATGAGAGATGTCTTCCAGGTGAGGCGGGCAGCAATTCTCAGAATTAAAAGCTCTCCGGTAAAATAATCTCTGTGATTCTTGCTCTGCTAGTGGCTGCATGCTGTGAAGATAGCCTTCAGATGTGGTACGGCTACACGCTTTAGCTACGGCAGCGTTTCTTGTTGTTGTTATGATTATACTGCCCAAATTATTCTCTGGGAAAGCACAACTGACCACCTTCCACGCACCTATGTCCCAAATATCATCAACAACAATGAGGTACGTGAGTACAATTAAATTTATGATCCGGTCATCATACTTTCGCATCAATGTGGATGAATGATCATACATAAAAGCTAGTTACCACTCATGTAGCCATAGCTAAAAGACTGGTATTGATCGAAGTACAGATGTTTTTGTGGCTAGAATATTACAATTAAGAGTGCAAAGTGTTTTATTGGGTTTGTTCTAGTTCTAGATACAACGATATCTGTCTGTACGTTTCGGATTTGCTATATATCTTGCGACAGAAAATTGAAGTTGGAAACTTCTAAATTTGAGCATCTTTCCCATCCTTAAAGGCCTGTTTGGTTGGGGGGAGTTTTTAGAAGGGATTGGGAGTTTAGAGGGTTGAGGCTATTAAGTGTTTTATTTTGTTGGGAGACATGACAATTTTGGTGGAATGGGGATGGGGAATTGAGCAAGGAACTCCTTCCTTTTCAACATCTGGGTAGGGGCAGGTAATTGGGAGGGAAGTCCTCCTTTACTTTTTCTAAGCAAATCTCAGCCATCCATTTTTATTAATGACCTAATCTCCAACTAAACTCTCTATCAATTTCCATCACCTCTACCAAACAAGATATTAAGATTAAAAATCAAATTCCCATCTTAATCTCATCATCAATTTCCTCGTGTAAACTCCCAATCCCCTTCCCTCGAGTTACCAAACAAGCCGTAAGGAGATACCATGAGGTACGAGGTACCATGAGGTACCAATCTTATCTAATCGTTGGTTTCATAGGGGTAGGATCGTCTAATGAAAATGAGGTGCCCGTGCTAATGACCGCCCACTCGGCCAATAGGGAGTTCGTCTGTGCCGCCCACTTCTTCGGCGCATCGAAGCTTCCCCGGCGCCGCCGCATCGAGCCTGTTTTCCCGCCACGGCGCCATCGCATCGACCCCGGCGCGGCTGCCGCCGCAACGAGGCCGCCGTGGCCACCGTGGCATCGAGGCCACCGCGGGCGCCGCCACATCCAGCCCGCCGCCCCGCCGTGGGCGCTGCCGCATCCAGCCTCATCGAGACAGCCGCGGCCCTCGTCTCATCGAGGGCGCTGTGCCTGCCGCCGTCCCGAGCCGGCGGCGCCCGCTGTCGCATCGAGCCGGCCGCGCCTCCCGTCGCATACAGGCCGCCGCCTGCAGCCGCATCCAGTCGCACAGTGCCGCATCCGCAGCCCCATATACCGCTGACAGTACTAATTTTGAGGACCAGCCGCAGGTAATTTGATTTGTGCTGCATCTGATAATGTGTGGTAGATTAGGAAGCTCTAGTTTTTATGATTGACAGCAATGCTTGAAGTAATCAAGGTGGTCCTTTTTTTGGGCAGGTTCATTGTGCCGTGTAGAATGGAAGCAGTTGGTAGCAGTATTGAGGAGAAGGAAGAGTATGCTCTACTATTATGGGCATGAAATTTCCTAGTGAGTATCATGGTTTTCAATTCTACAATCAGTATGCTAGAGAGAGAGGATTTAGGAAGGAGGTATATATGGACAGTTCTAACAGAACTAGGGAGCCACGGGCATTATCTCGCTGTGGTTGCAAAGCTCAATTTGAGATAAAACATGATGAGGAAAAAGGAAATTGGTATGTCGTTAGGTTTGAATCGAATCATAACCATCCGTTGTGTAAAGCTGATCAAGTGCCATTTTTGCGCTCACATCGTAGAATAACTCCTGCAGCACAGGCTAAGATGGTGGAATTGAGAGATGTTGGTTTGCATCAGCATCAAGTGATGGATATAATGGAGAGAGACCATGGTGGTTATGAGGCTACTGGTTTTACTTCCAGGGACATGTACAATTTTTTTGTGAAGCTGAAGAAGAAACATATTAAAGGTGGAGATGCTGACCATGCTATTAATATTGATTATTGCTGTTCCTGTAATGAGATGGTTTTATAACCTCGTTGGTTTGATTTGGTTCCTGTAAGGAGATGCTTAGATAACCTCTTTGGAAACCTTGTTTTTCCTGTAAGAGTGCCTTGATGACCTTGATGATTCCTGTAAGAGGAGTACCTTGATGACCTTGATGATTTTGTTCTTTCATTTACTGTGATGATGTGGTGTGAGCAGAAATTATTACAGTGCGCACGCAAGTAGCTCTGTTTGTTTGCAAACACATATCAGCAAGTACCTTGATGACCTTGATGATTCCTGTAAGAGGAATACCTTGATGACTTTGATGATTTTGTTCTTTCATTTACTCTGATGATGTGGTGTGAGTAGGAATTATTACAGTGCGCACGCAAGTAGCTCTGTTAAATTGCAAACACAGATCATCAAGTACCTCTGTATTAGTTATGCAACTGAACATGCCTGTCATCACTAACTTTGCTTTTCGGTATGTAAAAGGATCTCTTTGAGCATGTAAAAGTTATGCAGATCTCTTTGAGCATGTAAAAGTTATGCAGTCCATAATGACTGTCTGAAGTGAGCATAACATTCCATTGTTGTGATCATCTTTGCAAAATTCTCAGGTCCATCACAAAATGCACACAAACAGGTGGCGCATAGTAATAGACACACATACAGGGGCATCAGTTTTGCAATCCAGTGCACTAGAATTGACTGATAGATATTTTACATCGGATTAACATAGCATACATTACACATGGTGCACTATAATGGACTGATAAGTCTTAACTGATAACCTAGGCAAAGTGCATAGCATCCATTACATATGGTGCAGCTAGAACAAACAGCATAATACTACATATGGCAGGAAACAACTTAATACTAGATTTCGCCTAATACCACATTAGGGGGGAGGGGGCACATAGATGTTGTTCATCCTTCACAGTTGTTGAGGAGCTCAAGGCTAAGAGTAAGCTCAGCATCGTTCTCACTGAACATGAAGACACAAACATCACATAGCTCGAATAATTTGTCTCCAACCAACTTATTCCATCCAGTTGTGAAGGTTGCTTGCTTATCTTTCGATTTCATTAGTCTCATCGGGTAGGAAACAGTTGATCCGACCACAGTCACAAGCAAATCTTCAATTGGAAGGTGTTCGTTTATGTACTGCTCGCTAAATGGTATGGAGAAGGCCTGAAAAATAAATACATGACAGTTACACTCAGGACAAGTACGGCTGAAGAAATGCAAAAGCGGTGGAATTAAAAGGTCAAACATACCATTTTTCCCTTTTTCAGATTAGTCTTATGTATCTCATACACATACAGTGAAATCTTAGGCAAATTGCTTGCTGCAATGCAGGCAAGTTGGTACTGCATCTTGTGTGTTAAAACAATGTATCTGGATCAAAATGTATTGAAATTTTTCTTTCAAAATATGTCTTTCAAGCTATTCTGTATGATTTCTGTTTCCCTAATTTCAATCCAACTGTAAGATTTTTGTTTCCCTAATTTCAATCCATCATCACCCATCCAAAATATACTGCCCAAACATTGAATAAAAACCACAAATTGCAATGAATAACACAAACCTTTTCGATCGGTCTCCATCCTCTCTCTGCATGTTCTGCCACACCAAGTCGGGATTTTGGACTATTTGCCATCCTCCTGAATGGCGTATTCCCAAATGCCATCTTCCCAAATAACTTTGATGATTTGCCATCCGGGTCTACTGATTTGTTTCTATTTTACCACTATTCACCTCAAACTCAGCAAATTGAGTAGAAAATGACCTCACTACCCCTCCCATTTCTCCTTTCCCTTCTTCCTTCTTGCTCTCAGGCATTAGTGATGTGGCGGAGCAGTCTTCGGCGTCTTCTGCGGCGGTGGCATCGCTCATGCTGCTGCTACCCTACAAGAGGTTCAACAGCCCATACATCACACAAAATCGAGCCTGACACCACCCGTCCTGTGCCGATGATCGATCTCGCCAGTGGAGTGGCACCCGCGCACATGGATAGACACCCAGAGAAACTTCTGGAACACAGCTGCCATTAGTGCCAACCGGATGCGCGTCCCTGTCCACCACGAGTCGAGCCAAAGAAATAATGTCGGCTATGAAGCGACTCGACAAACTTGATGGCTGGTGGTGCAT

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CDS seq

MHHQPSSLSSRFIADIISLARLVVDRDAHPAFSIPFSEQYINEHLPIEDLLVTVVGSTVSYPMRLMKSKDKQATFTTGWNKLVGDKLFELCDVCVFMFSENDAELTLSLELLNNCSMRRRRGSFDAPKKWAAQTNSLLAEWAYDGSAKYCRVHDIVLDLIISLSTGQNFVAIVDEQQHWSSFKKIRRTWFPSNGTDNRIVKKITNNCSQVRSLLFFENPKPKQIPQFKKCHALRLKYLKVFGVNVTELPKDIGRLQQLETLTIHAGDVDEINIPSSVCRLQKLQRLNFNYPMRLPDEIGVLQALEVLYLNSIRLRQLRILCPGIYDFGGDVARFQRYKEAFYFTLNEL

Protein seq

MHHQPSSLSSRFIADIISLARLVVDRDAHPAFSIPFSEQYINEHLPIEDLLVTVVGSTVSYPMRLMKSKDKQATFTTGWNKLVGDKLFELCDVCVFMFSENDAELTLSLELLNNCSMRRRRGSFDAPKKWAAQTNSLLAEWAYDGSAKYCRVHDIVLDLIISLSTGQNFVAIVDEQQHWSSFKKIRRTWFPSNGTDNRIVKKITNNCSQVRSLLFFENPKPKQIPQFKKCHALRLKYLKVFGVNVTELPKDIGRLQQLETLTIHAGDVDEINIPSSVCRLQKLQRLNFNYPMRLPDEIGVLQALEVLYLNSIRLRQLRILCPGIYDFGGDVARFQRYKEAFYFTLNEL

Function B3 domain-containing protein Os03g0164300 [UniProtKB/Swiss-Prot:B7EIH2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsJ4155_12g0103300 OsJ4155_12g0103300.10 Chr12 9274740 9280175 - .
CDS seq

ATGCACCACCAGCCATCAAGTTTGTCGAGTCGCTTCATAGCCGACATTATTTCTTTGGCTCGACTCGTGGTGGACAGGGACGCGCATCCGGCCTTCTCCATACCATTTAGCGAGCAGTACATAAACGAACACCTTCCAATTGAAGATTTGCTTGTGACTGTGGTCGGATCAACTGTTTCCTACCCGATGAGACTAATGAAATCGAAAGATAAGCAAGCAACCTTCACAACTGGATGGAATAAGTTGGTTGGAGACAAATTATTCGAGCTATGTGATGTTTGTGTCTTCATGTTCAGTGAGAACGATGCTGAGCTTACTCTTAGCCTTGAGCTCCTCAACAACTGCTCGATGCGGCGGCGCCGGGGAAGCTTCGATGCGCCGAAGAAGTGGGCGGCACAGACGAACTCCCTATTGGCCGAGTGGGCGTATGATGGCAGCGCCAAGTATTGCCGAGTTCATGATATTGTGCTTGATCTTATCATAAGCCTATCGACTGGACAAAATTTCGTCGCAATAGTGGATGAACAACAGCATTGGAGTTCTTTCAAGAAGATTCGGAGGACCTGGTTCCCATCCAATGGCACAGATAATAGAATAGTCAAGAAGATTACGAACAACTGTTCACAAGTTCGTTCGCTGCTCTTCTTTGAGAATCCTAAACCGAAACAAATACCACAATTTAAGAAATGCCATGCTCTGCGGTTGAAGTATCTGAAGGTTTTTGGTGTAAATGTTACCGAGCTGCCCAAGGATATTGGACGGCTGCAGCAACTAGAAACACTAACTATTCATGCAGGAGATGTCGACGAAATAAACATTCCGTCAAGTGTTTGTAGACTGCAAAAACTACAGCGCCTAAATTTTAATTACCCAATGAGATTGCCAGATGAAATTGGAGTTTTGCAAGCTTTGGAGGTGCTATATCTTAATAGCATTCGATTAAGGCAGCTGCGCATACTTTGTCCTGGAATTTATGATTTTGGAGGTGATGTAGCAAGGTTCCAGAGGTACAAGGAAGCCTTTTACTTCACTCTCAATGAGTTGG

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Protein seq

MHHQPSSLSSRFIADIISLARLVVDRDAHPAFSIPFSEQYINEHLPIEDLLVTVVGSTVSYPMRLMKSKDKQATFTTGWNKLVGDKLFELCDVCVFMFSENDAELTLSLELLNNCSMRRRRGSFDAPKKWAAQTNSLLAEWAYDGSAKYCRVHDIVLDLIISLSTGQNFVAIVDEQQHWSSFKKIRRTWFPSNGTDNRIVKKITNNCSQVRSLLFFENPKPKQIPQFKKCHALRLKYLKVFGVNVTELPKDIGRLQQLETLTIHAGDVDEINIPSSVCRLQKLQRLNFNYPMRLPDEIGVLQALEVLYLNSIRLRQLRILCPGIYDFGGDVARFQRYKEAFYFTLNEL

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0270300 SBH 0.617404 1.269819 4.729718
Nipponbare | IRGSP 1.0 | MSU LOC_Os12g17130 RBH 0.000000 0.574919 0.000000
Nipponbare | IRGSP 1.0 | RAP-db Os12g0270300 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_12g0008960 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0009080 SBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_12g0009050 SBH 0.0 0.000000 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0008890 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0008710 SBH 0.000000 0.000000 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_12G0134200 RBH 0.0646715 0.4755605 0.029949
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0008760 SBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0149400 RBH 0 0.010496 0.062901
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_12g0008670 SBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_12g0008940 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_12g0008870 SBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0008850 SBH 0.0 0.0 0.081038
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_12g0008970 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_12G008730 SBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_12g0008680 SBH 0.0 0.0 0.0
Os XI: R9311 | R9311 | AGIS R9311C12g40263 RBH None None None
Os XI-adm: HZ | HZ | PKU OsHZ_12g0098700 RBH None None None
Os XI-adm: J4155S | J4155S | PKU NA NA NA NA NA
Os XI-adm: LK638S | LK638S | PKU OsLK638S_12g0101600 RBH None None None
Os XI-adm: XL628S | XL628S | PKU OsXL628S_12g0103200 RBH None None None
Os GJ-temp: 02428 | 02428 | SICAU Os02428G1223972200.01 SBH None None None
Os cB: Basmati1 | Basmati1 | SICAU OsBasmati1G1237799400.01 SBH None None None
Os O.glaberrima: Ogla | OglaRS2 | DIADE Oglab_031442 RBH None None None
Os XI-1A: CN1 | CN1 | SICAU OsCN1G1233870800.01 SBH None None None
Os XI-1A: D62 | D62 | SICAU OsD62G1235992600.01 SBH None None None
Os XI-1A: DG | DG | SICAU OsDGG1227309200.01 SBH None None None
Os GJ-temp: DHX2 | DHX2 | SICAU OsDHX2G1232958800.01 SBH None None None
Os XI-adm: FH838 | FH838 | SICAU OsFH838G1231834000.01 SBH None None None
Os XI-1A: FS32 | FS32 | SICAU OsFS32G1225695200.01 SBH None None None
Os XI-1A: G46 | G46 | SICAU OsG46G1222575000.01 SBH None None None
Os XI-adm: G630 | G630 | SICAU OsG630G1218645800.01 SBH None None None
Os XI-1B: G8 | G8 | SICAU OsG8G1227584600.01 SBH None None None
Os XI-1A: II32 | II32 | SICAU OsII32G1235913000.01 SBH None None None
Os XI-1B: J4155 | J4155 | SICAU OsJ4155G1223628800.01 SBH None None None
Os GJ-temp: Kosh | Kosh | SICAU OsKoshG1233924400.01 SBH None None None
Os GJ-temp: KY131 | KY131 | SICAU OsKY131G1219088800.01 RBH None None None
Os GJ-trp: Lemont | Lemont | SICAU OsLemontG1223911600.01 SBH None None None
Os GJ-adm: LJ | LJ | SICAU OsLJG1225068600.01 SBH None None None
Os GJ-sbtrp: NamRoo | NamRoo | SICAU OsNamRooG1232107000.01 SBH None None None
Os XI-1B: R498 | R498 | SICAU OsR498G1221264600.01 SBH None None None
Os XI-1B: R527 | R527 | SICAU OsR527G1223522600.01 RBH None None None
Os XI-1B: S548 | S548 | SICAU OsS548G1245338600.01 SBH None None None
Os XI-2: TM | TM | SICAU TMG1231560400.01 SBH None None None
Os XI-3: Tumba | Tumba | SICAU OsTumbaG1226926000.01 SBH None None None
Os XI-adm: WSSM | WSSM | SICAU OsWSSMG1221844200.01 SBH None None None
Os XI-1B: Y3551 | Y3551 | SICAU OsY3551G1227487600.01 SBH None None None
Os XI-1B: Y58S | Y58S | SICAU OsY58SG1229776600.01 SBH None None None
Os XI-adm: YX1 | YX1 | SICAU OsYX1G1232320400.01 SBH None None None
Os GJ-temp: ZH11 | ZH11 | SICAU OsZH11G1231321600.01 SBH None None None
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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