Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsJ4155_12g0103300 | OGI:12026280 | 35/50 | Os XI-adm: J4155S | J4155S | PKU | Chr12:9274740-9280175 | ||||||||
Gene Symbol | - | ||||||||||
Mutant | - | ||||||||||
Stuctural Variations | LJ_J4155S_INS1219240,R9311_J4155S_INS1207750,XL628S_J4155S_OTH1209020,XL628S_J4155S_INS1209030,R498_J4155S_INS1206510,LK638S_J4155S_OTH1208960,LK638S_J4155S_INS1208970,ZS97RS3_J4155S_OTH1210220,ZS97RS3_J4155S_INS1210230,YX1_J4155S_INS1207920,Azucena_J4155S_OTH1219150,Azucena_J4155S_INS1219160,II32_J4155S_INS1207410,OglaRS2_J4155S_INS1218670,127742_J4155S_INS1207450,NamRoo_J4155S_INS1216900,132278_J4155S_INS1218280,117534_J4155S_INS1218470,Tumba_J4155S_INS1210500,125619_J4155S_OTH1219770,125619_J4155S_INS1219780,127518_J4155S_OTH1206350,127518_J4155S_INS1206360,G46_J4155S_OTH1209910,G46_J4155S_INS1209920,DG_J4155S_OTH1210120,DG_J4155S_INS1210130,
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DNA seq | CCAACTCATTGAGAGTGAAGTAAAAGGCTTCCTTGTACCTCTGGAACCTTGCTACATCACCTCCAAAATCATAAATTCCAGGACAAAGTATGCGCAGCTGCCTTAATCTGGTTAGCCAACAGAGCTCTTGTAAACATTTTATGCTGTACCGAATGCTATTAAGATATAGCACCTCCAAAGCTTGCAAAACTCCAATTTCATCTGGCAATCTCATTGGGTAATTAAAATTTAGGCGCTGTAGTTTTTGCAGTCTACAAACACTTGACGGAATGTTTATTTCGTCGACATCTCCTGCATGAATAGTTAGTGTTTCTAGTTGCTGCAGCCGTCCAATATCCTTGGGCAGCTCGGTAACATTTACACCAAAAACCTTCAGATACTTCAACTGGAAAAGGTATGTTAGGCTGTTAATATGCTAGCTATCCAGGTTCCTACACCGATACAGATCCAATACCCGCAGAGCATGGCATTTCTTAAATTGTGGTATTTGTTTCGGTTTAGGATTCTCAAAGAAGAGCAGCGAACGAACTTGTGAACAGTTGTTCGTAATCTTCTTGACTATTCTATTATCTGTGCCATTGGATGGGAACCAGGTCCTCCGAATCTTCTTGAAAGAACTCCAATGCTGTTGTTCATCCACTATTGCGACGAAATTTTGTCCAGTCGATAGGCTTATGATAAGATCAAGCACAATATCATGAACTCGGCAATACTTGGCGCTGCCATCATACTGGATACTAACTGGTTGGATCAAGCTTCTATTTATAAGCTCATTAAAGTAGTTCTCTCCTACTTGCTCCTGTGTTTGATTCTTCACTTCAACGATGAATCCTTCAGCTATCCATCTCCATATAAGGTCTTGTCTATCAATTTAATAATCCTCTGGATACATTTTTTTTTAGATAATGGAATATAATCCCGGCCTTTACTCAAAAAGCTACAGCCAATCCTCTGGATACATGCTTAGATACAACGGATATTTTTTCGGGGGATAAGGAAGATCATAATAACTGAGCATTAATATTTTCCTCACTCGAGCCTCTGAGTTTAGTGAAGCACCAACAGTATCATGCACTTGCACCCACTGGTCCTCTGAATCGGATTTGGTTGCTAGCAAGCTAGCTATGGAGATTATAGCTAATGGTAAACCACGACATTTCGATATGATGGCATGAGAGATGTCTTCCAGGTGAGGCGGGCAGCAATTCTCAGAATTAAAAGCTCTCCGGTAAAATAATCTCTGTGATTCTTGCTCTGCTAGTGGCTGCATGCTGTGAAGATAGCCTTCAGATGTGGTACGGCTACACGCTTTAGCTACGGCAGCGTTTCTTGTTGTTGTTATGATTATACTGCCCAAATTATTCTCTGGGAAAGCACAACTGACCACCTTCCACGCACCTATGTCCCAAATATCATCAACAACAATGAGGTACGTGAGTACAATTAAATTTATGATCCGGTCATCATACTTTCGCATCAATGTGGATGAATGATCATACATAAAAGCTAGTTACCACTCATGTAGCCATAGCTAAAAGACTGGTATTGATCGAAGTACAGATGTTTTTGTGGCTAGAATATTACAATTAAGAGTGCAAAGTGTTTTATTGGGTTTGTTCTAGTTCTAGATACAACGATATCTGTCTGTACGTTTCGGATTTGCTATATATCTTGCGACAGAAAATTGAAGTTGGAAACTTCTAAATTTGAGCATCTTTCCCATCCTTAAAGGCCTGTTTGGTTGGGGGGAGTTTTTAGAAGGGATTGGGAGTTTAGAGGGTTGAGGCTATTAAGTGTTTTATTTTGTTGGGAGACATGACAATTTTGGTGGAATGGGGATGGGGAATTGAGCAAGGAACTCCTTCCTTTTCAACATCTGGGTAGGGGCAGGTAATTGGGAGGGAAGTCCTCCTTTACTTTTTCTAAGCAAATCTCAGCCATCCATTTTTATTAATGACCTAATCTCCAACTAAACTCTCTATCAATTTCCATCACCTCTACCAAACAAGATATTAAGATTAAAAATCAAATTCCCATCTTAATCTCATCATCAATTTCCTCGTGTAAACTCCCAATCCCCTTCCCTCGAGTTACCAAACAAGCCGTAAGGAGATACCATGAGGTACGAGGTACCATGAGGTACCAATCTTATCTAATCGTTGGTTTCATAGGGGTAGGATCGTCTAATGAAAATGAGGTGCCCGTGCTAATGACCGCCCACTCGGCCAATAGGGAGTTCGTCTGTGCCGCCCACTTCTTCGGCGCATCGAAGCTTCCCCGGCGCCGCCGCATCGAGCCTGTTTTCCCGCCACGGCGCCATCGCATCGACCCCGGCGCGGCTGCCGCCGCAACGAGGCCGCCGTGGCCACCGTGGCATCGAGGCCACCGCGGGCGCCGCCACATCCAGCCCGCCGCCCCGCCGTGGGCGCTGCCGCATCCAGCCTCATCGAGACAGCCGCGGCCCTCGTCTCATCGAGGGCGCTGTGCCTGCCGCCGTCCCGAGCCGGCGGCGCCCGCTGTCGCATCGAGCCGGCCGCGCCTCCCGTCGCATACAGGCCGCCGCCTGCAGCCGCATCCAGTCGCACAGTGCCGCATCCGCAGCCCCATATACCGCTGACAGTACTAATTTTGAGGACCAGCCGCAGGTAATTTGATTTGTGCTGCATCTGATAATGTGTGGTAGATTAGGAAGCTCTAGTTTTTATGATTGACAGCAATGCTTGAAGTAATCAAGGTGGTCCTTTTTTTGGGCAGGTTCATTGTGCCGTGTAGAATGGAAGCAGTTGGTAGCAGTATTGAGGAGAAGGAAGAGTATGCTCTACTATTATGGGCATGAAATTTCCTAGTGAGTATCATGGTTTTCAATTCTACAATCAGTATGCTAGAGAGAGAGGATTTAGGAAGGAGGTATATATGGACAGTTCTAACAGAACTAGGGAGCCACGGGCATTATCTCGCTGTGGTTGCAAAGCTCAATTTGAGATAAAACATGATGAGGAAAAAGGAAATTGGTATGTCGTTAGGTTTGAATCGAATCATAACCATCCGTTGTGTAAAGCTGATCAAGTGCCATTTTTGCGCTCACATCGTAGAATAACTCCTGCAGCACAGGCTAAGATGGTGGAATTGAGAGATGTTGGTTTGCATCAGCATCAAGTGATGGATATAATGGAGAGAGACCATGGTGGTTATGAGGCTACTGGTTTTACTTCCAGGGACATGTACAATTTTTTTGTGAAGCTGAAGAAGAAACATATTAAAGGTGGAGATGCTGACCATGCTATTAATATTGATTATTGCTGTTCCTGTAATGAGATGGTTTTATAACCTCGTTGGTTTGATTTGGTTCCTGTAAGGAGATGCTTAGATAACCTCTTTGGAAACCTTGTTTTTCCTGTAAGAGTGCCTTGATGACCTTGATGATTCCTGTAAGAGGAGTACCTTGATGACCTTGATGATTTTGTTCTTTCATTTACTGTGATGATGTGGTGTGAGCAGAAATTATTACAGTGCGCACGCAAGTAGCTCTGTTTGTTTGCAAACACATATCAGCAAGTACCTTGATGACCTTGATGATTCCTGTAAGAGGAATACCTTGATGACTTTGATGATTTTGTTCTTTCATTTACTCTGATGATGTGGTGTGAGTAGGAATTATTACAGTGCGCACGCAAGTAGCTCTGTTAAATTGCAAACACAGATCATCAAGTACCTCTGTATTAGTTATGCAACTGAACATGCCTGTCATCACTAACTTTGCTTTTCGGTATGTAAAAGGATCTCTTTGAGCATGTAAAAGTTATGCAGATCTCTTTGAGCATGTAAAAGTTATGCAGTCCATAATGACTGTCTGAAGTGAGCATAACATTCCATTGTTGTGATCATCTTTGCAAAATTCTCAGGTCCATCACAAAATGCACACAAACAGGTGGCGCATAGTAATAGACACACATACAGGGGCATCAGTTTTGCAATCCAGTGCACTAGAATTGACTGATAGATATTTTACATCGGATTAACATAGCATACATTACACATGGTGCACTATAATGGACTGATAAGTCTTAACTGATAACCTAGGCAAAGTGCATAGCATCCATTACATATGGTGCAGCTAGAACAAACAGCATAATACTACATATGGCAGGAAACAACTTAATACTAGATTTCGCCTAATACCACATTAGGGGGGAGGGGGCACATAGATGTTGTTCATCCTTCACAGTTGTTGAGGAGCTCAAGGCTAAGAGTAAGCTCAGCATCGTTCTCACTGAACATGAAGACACAAACATCACATAGCTCGAATAATTTGTCTCCAACCAACTTATTCCATCCAGTTGTGAAGGTTGCTTGCTTATCTTTCGATTTCATTAGTCTCATCGGGTAGGAAACAGTTGATCCGACCACAGTCACAAGCAAATCTTCAATTGGAAGGTGTTCGTTTATGTACTGCTCGCTAAATGGTATGGAGAAGGCCTGAAAAATAAATACATGACAGTTACACTCAGGACAAGTACGGCTGAAGAAATGCAAAAGCGGTGGAATTAAAAGGTCAAACATACCATTTTTCCCTTTTTCAGATTAGTCTTATGTATCTCATACACATACAGTGAAATCTTAGGCAAATTGCTTGCTGCAATGCAGGCAAGTTGGTACTGCATCTTGTGTGTTAAAACAATGTATCTGGATCAAAATGTATTGAAATTTTTCTTTCAAAATATGTCTTTCAAGCTATTCTGTATGATTTCTGTTTCCCTAATTTCAATCCAACTGTAAGATTTTTGTTTCCCTAATTTCAATCCATCATCACCCATCCAAAATATACTGCCCAAACATTGAATAAAAACCACAAATTGCAATGAATAACACAAACCTTTTCGATCGGTCTCCATCCTCTCTCTGCATGTTCTGCCACACCAAGTCGGGATTTTGGACTATTTGCCATCCTCCTGAATGGCGTATTCCCAAATGCCATCTTCCCAAATAACTTTGATGATTTGCCATCCGGGTCTACTGATTTGTTTCTATTTTACCACTATTCACCTCAAACTCAGCAAATTGAGTAGAAAATGACCTCACTACCCCTCCCATTTCTCCTTTCCCTTCTTCCTTCTTGCTCTCAGGCATTAGTGATGTGGCGGAGCAGTCTTCGGCGTCTTCTGCGGCGGTGGCATCGCTCATGCTGCTGCTACCCTACAAGAGGTTCAACAGCCCATACATCACACAAAATCGAGCCTGACACCACCCGTCCTGTGCCGATGATCGATCTCGCCAGTGGAGTGGCACCCGCGCACATGGATAGACACCCAGAGAAACTTCTGGAACACAGCTGCCATTAGTGCCAACCGGATGCGCGTCCCTGTCCACCACGAGTCGAGCCAAAGAAATAATGTCGGCTATGAAGCGACTCGACAAACTTGATGGCTGGTGGTGCAT
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CDS seq | MHHQPSSLSSRFIADIISLARLVVDRDAHPAFSIPFSEQYINEHLPIEDLLVTVVGSTVSYPMRLMKSKDKQATFTTGWNKLVGDKLFELCDVCVFMFSENDAELTLSLELLNNCSMRRRRGSFDAPKKWAAQTNSLLAEWAYDGSAKYCRVHDIVLDLIISLSTGQNFVAIVDEQQHWSSFKKIRRTWFPSNGTDNRIVKKITNNCSQVRSLLFFENPKPKQIPQFKKCHALRLKYLKVFGVNVTELPKDIGRLQQLETLTIHAGDVDEINIPSSVCRLQKLQRLNFNYPMRLPDEIGVLQALEVLYLNSIRLRQLRILCPGIYDFGGDVARFQRYKEAFYFTLNEL |
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Protein seq | MHHQPSSLSSRFIADIISLARLVVDRDAHPAFSIPFSEQYINEHLPIEDLLVTVVGSTVSYPMRLMKSKDKQATFTTGWNKLVGDKLFELCDVCVFMFSENDAELTLSLELLNNCSMRRRRGSFDAPKKWAAQTNSLLAEWAYDGSAKYCRVHDIVLDLIISLSTGQNFVAIVDEQQHWSSFKKIRRTWFPSNGTDNRIVKKITNNCSQVRSLLFFENPKPKQIPQFKKCHALRLKYLKVFGVNVTELPKDIGRLQQLETLTIHAGDVDEINIPSSVCRLQKLQRLNFNYPMRLPDEIGVLQALEVLYLNSIRLRQLRILCPGIYDFGGDVARFQRYKEAFYFTLNEL |
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Function | B3 domain-containing protein Os03g0164300 [UniProtKB/Swiss-Prot:B7EIH2] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsJ4155_12g0103300 | OsJ4155_12g0103300.10 | Chr12 | 9274740 | 9280175 | - | . | ||
CDS seq | ATGCACCACCAGCCATCAAGTTTGTCGAGTCGCTTCATAGCCGACATTATTTCTTTGGCTCGACTCGTGGTGGACAGGGACGCGCATCCGGCCTTCTCCATACCATTTAGCGAGCAGTACATAAACGAACACCTTCCAATTGAAGATTTGCTTGTGACTGTGGTCGGATCAACTGTTTCCTACCCGATGAGACTAATGAAATCGAAAGATAAGCAAGCAACCTTCACAACTGGATGGAATAAGTTGGTTGGAGACAAATTATTCGAGCTATGTGATGTTTGTGTCTTCATGTTCAGTGAGAACGATGCTGAGCTTACTCTTAGCCTTGAGCTCCTCAACAACTGCTCGATGCGGCGGCGCCGGGGAAGCTTCGATGCGCCGAAGAAGTGGGCGGCACAGACGAACTCCCTATTGGCCGAGTGGGCGTATGATGGCAGCGCCAAGTATTGCCGAGTTCATGATATTGTGCTTGATCTTATCATAAGCCTATCGACTGGACAAAATTTCGTCGCAATAGTGGATGAACAACAGCATTGGAGTTCTTTCAAGAAGATTCGGAGGACCTGGTTCCCATCCAATGGCACAGATAATAGAATAGTCAAGAAGATTACGAACAACTGTTCACAAGTTCGTTCGCTGCTCTTCTTTGAGAATCCTAAACCGAAACAAATACCACAATTTAAGAAATGCCATGCTCTGCGGTTGAAGTATCTGAAGGTTTTTGGTGTAAATGTTACCGAGCTGCCCAAGGATATTGGACGGCTGCAGCAACTAGAAACACTAACTATTCATGCAGGAGATGTCGACGAAATAAACATTCCGTCAAGTGTTTGTAGACTGCAAAAACTACAGCGCCTAAATTTTAATTACCCAATGAGATTGCCAGATGAAATTGGAGTTTTGCAAGCTTTGGAGGTGCTATATCTTAATAGCATTCGATTAAGGCAGCTGCGCATACTTTGTCCTGGAATTTATGATTTTGGAGGTGATGTAGCAAGGTTCCAGAGGTACAAGGAAGCCTTTTACTTCACTCTCAATGAGTTGG
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Protein seq | MHHQPSSLSSRFIADIISLARLVVDRDAHPAFSIPFSEQYINEHLPIEDLLVTVVGSTVSYPMRLMKSKDKQATFTTGWNKLVGDKLFELCDVCVFMFSENDAELTLSLELLNNCSMRRRRGSFDAPKKWAAQTNSLLAEWAYDGSAKYCRVHDIVLDLIISLSTGQNFVAIVDEQQHWSSFKKIRRTWFPSNGTDNRIVKKITNNCSQVRSLLFFENPKPKQIPQFKKCHALRLKYLKVFGVNVTELPKDIGRLQQLETLTIHAGDVDEINIPSSVCRLQKLQRLNFNYPMRLPDEIGVLQALEVLYLNSIRLRQLRILCPGIYDFGGDVARFQRYKEAFYFTLNEL
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | None | None | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
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Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0270300 | SBH | 0.617404 | 1.269819 | 4.729718 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g17130 | RBH | 0.000000 | 0.574919 | 0.000000 |
Nipponbare | IRGSP 1.0 | RAP-db | Os12g0270300 | SBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008960 | RBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009080 | SBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009050 | SBH | 0.0 | 0.000000 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008890 | SBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008710 | SBH | 0.000000 | 0.000000 | 0.000000 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0134200 | RBH | 0.0646715 | 0.4755605 | 0.029949 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008760 | SBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0149400 | RBH | 0 | 0.010496 | 0.062901 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008670 | SBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008940 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008870 | SBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008850 | SBH | 0.0 | 0.0 | 0.081038 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008970 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008730 | SBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008680 | SBH | 0.0 | 0.0 | 0.0 |
Os XI: R9311 | R9311 | AGIS | R9311C12g40263 | RBH | None | None | None |
Os XI-adm: HZ | HZ | PKU | OsHZ_12g0098700 | RBH | None | None | None |
Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
Os XI-adm: LK638S | LK638S | PKU | OsLK638S_12g0101600 | RBH | None | None | None |
Os XI-adm: XL628S | XL628S | PKU | OsXL628S_12g0103200 | RBH | None | None | None |
Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1223972200.01 | SBH | None | None | None |
Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1237799400.01 | SBH | None | None | None |
Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_031442 | RBH | None | None | None |
Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1233870800.01 | SBH | None | None | None |
Os XI-1A: D62 | D62 | SICAU | OsD62G1235992600.01 | SBH | None | None | None |
Os XI-1A: DG | DG | SICAU | OsDGG1227309200.01 | SBH | None | None | None |
Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1232958800.01 | SBH | None | None | None |
Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1231834000.01 | SBH | None | None | None |
Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1225695200.01 | SBH | None | None | None |
Os XI-1A: G46 | G46 | SICAU | OsG46G1222575000.01 | SBH | None | None | None |
Os XI-adm: G630 | G630 | SICAU | OsG630G1218645800.01 | SBH | None | None | None |
Os XI-1B: G8 | G8 | SICAU | OsG8G1227584600.01 | SBH | None | None | None |
Os XI-1A: II32 | II32 | SICAU | OsII32G1235913000.01 | SBH | None | None | None |
Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1223628800.01 | SBH | None | None | None |
Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1233924400.01 | SBH | None | None | None |
Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1219088800.01 | RBH | None | None | None |
Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1223911600.01 | SBH | None | None | None |
Os GJ-adm: LJ | LJ | SICAU | OsLJG1225068600.01 | SBH | None | None | None |
Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1232107000.01 | SBH | None | None | None |
Os XI-1B: R498 | R498 | SICAU | OsR498G1221264600.01 | SBH | None | None | None |
Os XI-1B: R527 | R527 | SICAU | OsR527G1223522600.01 | RBH | None | None | None |
Os XI-1B: S548 | S548 | SICAU | OsS548G1245338600.01 | SBH | None | None | None |
Os XI-2: TM | TM | SICAU | TMG1231560400.01 | SBH | None | None | None |
Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1226926000.01 | SBH | None | None | None |
Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1221844200.01 | SBH | None | None | None |
Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1227487600.01 | SBH | None | None | None |
Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1229776600.01 | SBH | None | None | None |
Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1232320400.01 | SBH | None | None | None |
Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1231321600.01 | SBH | None | None | None |