Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: OglaRS2_J4155S_INS1218670

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os O.glaberrima: OglaRS2 | OglaRS2

Os XI-adm: Jing4155S | J4155S

Chr12

8569918

SV Length:

Query Start:

Query End:

Allele sv Count:

376 bp

9276469

9276844

19

Gene_id	Chromosome	Start	End
OsJ4155_12g0103300	Chr12	9274739	9280175

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
OglaRS2_117425_INS1218920	Chr12	8569918	8569918	9276570	9276945	376
OglaRS2_125827_INS1218930	Chr12	8569918	8569918	9127620	9127995	376
OglaRS2_127564_INS1218600	Chr12	8569918	8569918	9067563	9067938	376
OglaRS2_127652_INS1217900	Chr12	8569918	8569918	9150737	9151112	376
OglaRS2_132424_INS1218590	Chr12	8569918	8569918	9106269	9106644	376
OglaRS2_Basmati1_INS1219540	Chr12	8569918	8569918	9871354	9871729	376
OglaRS2_CN1_INS1218870	Chr12	8569918	8569918	9110219	9110594	376
OglaRS2_D62_INS1218480	Chr12	8569918	8569918	9218363	9218738	376
OglaRS2_FS32_INS1219010	Chr12	8569918	8569918	9144316	9144691	376
OglaRS2_G8_INS1218670	Chr12	8569918	8569918	9186867	9187242	376
OglaRS2_HZ_INS1218710	Chr12	8569918	8569918	9071106	9071481	376
OglaRS2_IR64_INS1218430	Chr12	8569918	8569918	9033696	9034071	376
OglaRS2_J4155_INS1218400	Chr12	8569918	8569918	9308963	9309338	376
OglaRS2_J4155S_INS1218670	Chr12	8569918	8569918	9276469	9276844	376
OglaRS2_R527_INS1218430	Chr12	8569918	8569918	8963015	8963390	376
OglaRS2_S548_INS1218490	Chr12	8569918	8569918	9191125	9191500	376
OglaRS2_TM_INS1218170	Chr12	8569918	8569918	9112572	9112947	376
OglaRS2_WSSM_INS1218570	Chr12	8569918	8569918	9011595	9011970	376
OglaRS2_Y58S_INS1218690	Chr12	8569918	8569918	9270236	9270611	376

>OglaRS2_J4155S_INS1218670
AGGCCTGTTTGGTTGGGGGGAGTTTTTAGAAGGGATTGGGAGTTTAGAGGGTTGAGGCTATTAAGTGTTTTATTTTGTTGGGAGACATGACAATTTTGGTGGAATGGGGATGGGGAATTGAGCAAGGAACTCCTTCCTTTTCAACATCTGGGTAGGGGCAGGTAATTGGGAGGGAAGTCCTCCTTTACTTTTTCTAAGCAAATCTCAGCCATCCATTTTTATTAATGACCTAATCTCCAACTAAACTCTCTATCAATTTCCATCACCTCTACCAAACAAGATATTAAGATTAAAAATCAAATTCCCATCTTAATCTCATCATCAATTTCCTCGTGTAAACTCCCAATCCCCTTCCCTCGAGTTACCAAACAAGCCG