Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127518_J4155S_OTH1206350

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Os XI-3B1: KHAO YAI GUANG | Os127518RS1

Os XI-adm: Jing4155S | J4155S

Chr12

9361281

9361288

SV Length:

Query Start:

Query End:

Allele sv Count:

410 bp

9276470

9276879

21

Gene_id	Chromosome	Start	End
OsJ4155_12g0103300	Chr12	9274739	9280175

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127518_117425_OTH1214000	Chr12	9361281	9361288	9276571	9276980	410
127518_125827_OTH1208350	Chr12	9361281	9361288	9127621	9128030	410
127518_127564_OTH1206750	Chr12	9361281	9361288	9067564	9067973	410
127518_127652_OTH1212440	Chr12	9361281	9361288	9150738	9151147	410
127518_132278_OTH1216590	Chr12	9361281	9361288	9728101	9728493	393
127518_132424_OTH1205800	Chr12	9361281	9361288	9106270	9106679	410
127518_Basmati1_OTH1215740	Chr12	9361281	9361288	9871355	9871764	410
127518_CN1_OTH1209270	Chr12	9361281	9361288	9110220	9110629	410
127518_D62_OTH1205140	Chr12	9361281	9361288	9218364	9218773	410
127518_FS32_OTH1205810	Chr12	9361281	9361288	9144317	9144726	410
127518_G8_OTH1210990	Chr12	9361281	9361288	9186868	9187277	410
127518_HZ_OTH1207710	Chr12	9361281	9361288	9071107	9071516	410
127518_IR64_OTH1207770	Chr12	9361281	9361288	9033697	9034106	410
127518_J4155_OTH1206030	Chr12	9361281	9361288	9308964	9309373	410
127518_J4155S_OTH1206350	Chr12	9361281	9361288	9276470	9276879	410
127518_NamRoo_OTH1215280	Chr12	9361281	9361288	9320625	9321017	393
127518_R527_OTH1207810	Chr12	9361281	9361288	8963016	8963425	410
127518_S548_OTH1207940	Chr12	9361281	9361288	9191126	9191535	410
127518_TM_OTH1206780	Chr12	9361281	9361288	9112573	9112982	410
127518_WSSM_OTH1208330	Chr12	9361281	9361288	9011596	9012005	410
127518_Y58S_OTH1206440	Chr12	9361281	9361288	9270237	9270646	410

>127518_J4155S_OTH1206350
GGCCTGTTTGGTTGGGGGGAGTTTTTAGAAGGGATTGGGAGTTTAGAGGGTTGAGGCTATTAAGTGTTTTATTTTGTTGGGAGACATGACAATTTTGGTGGAATGGGGATGGGGAATTGAGCAAGGAACTCCTTCCTTTTCAACATCTGGGTAGGGGCAGGTAATTGGGAGGGAAGTCCTCCTTTACTTTTTCTAAGCAAATCTCAGCCATCCATTTTTATTAATGACCTAATCTCCAACTAAACTCTCTATCAATTTCCATCACCTCTACCAAACAAGATATTAAGATTAAAAATCAAATTCCCATCTTAATCTCATCATCAATTTCCTCGTGTAAACTCCCAATCCCCTTCCCTCGAGTTACCAAACAAGCCGTAAGGAGATACCATGAGGTACGAGGTACCATGAGG